Rh2AG134100

Floral homeotic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013589
Physical Location & Seq
Reverse (-)
12117288 .. 12120846
3559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG134100.1

Sequence Viewer

Length: 696 bp
ATGGGTCGTGGGAAGATTGAGATCAAGCTGATCGAGAACCAGACGAACAGGCAGTCCTCCACTGACAAAATCCACGAGTATATTAGCCCAACCACTACGACCAAGAAGATGTTTGATCTCTACCAGAAGAATTTAGAGATCGATCTATGGAGCTCACACTACGAGGCAATGAAAGAGAACTTGTGGAAACTGAAAGAGGTTAACAATAAGCTGAGGAGGGACATCAGGCAAAGGCTGGGGCATGATCTTAATGGTCTGAGCTATGCTGAGCTGCAAGATCTGGAGGAAACGATGAGTCAATCCGTGCAAATCATACGTGATCGAAAGTACCACGTGCTCAAGACTCAAGCAGAGACTACCAGGAAAAAGGTGAAGAACTTGGAGGAGAGAAACAGTAATTTAATGCATGGCTATGGAGCTCCAGGTAATGAGGATCCCCAATATGGGTATGTGGATAATGAAGGGGACTATGAATCTGCTGTTGCATTGGCCAATGGAGCATCAAACTTGTATTTTTTCAATCGCGTCCACAACAACCACAACCTTGACCATGGACATGGTGGCGGTTCACTGGTCTCCTCCATTACTCATCTCCAGAACCCTGATAACCACGGCAACCACAACCTTGAGAATGGACATGGTGGGGGTTCACTCATTTCCTCCATCACTCATCTCCATGATCTCCGTCTTGCTTAA

Protein Analysis

231

Amino Acids

26.36

Weight (kDa)

6.56

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 51 - 136 8.9e-21 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013589)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12260
malus_domestica MD02G1136500.v1.1 MD15G1250200.v1.1
prunus_persica Prupe.7G164100_v2.0.a1 Prupe.7G164100_v2.0.a1
pyrus_communis pycom15g22050
rosa_chinensis RchiOBHm_Chr2g0100071
rosa_laevigata RLG00000016933
rosa_multiflora Rmu_sc0000164.1_g000022
rosa_roxburghii Rroxscaffold_2G00142600
rosa_rugosa Rorug02G0085000 Rorug02G0085100 Rorug02G0085200
rosa_samantha Rh2AG134100 Rh2BG137800 Rh2CG139200 Rh2DG139500
rosa_wichuraiana Rw2G010460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 525
AciI CCGC 1 cut(s) 564
AclWI GGATC 2 cut(s) 428, 441
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 1 cut(s) 130
AcvI CACGTG 1 cut(s) 334
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 2 cut(s) 443, 444
AgsI TTSAA 1 cut(s) 520
AjnI CCWGG 2 cut(s) 359, 421
AloI GAACNNNNNNTCC 2 cut(s) 38, 70
AluBI AGCT 6 cut(s) 28, 153, 211, 261, 271, 419
AluI AGCT 6 cut(s) 28, 153, 211, 261, 271, 419
Alw21I GWGCWC 3 cut(s) 155, 339, 421
Alw26I GTCTC 2 cut(s) 347, 580
AlwI GGATC 2 cut(s) 428, 441
AoxI GGCC 1 cut(s) 489
ApeKI GCWGC 1 cut(s) 271
ApoI RAATTY 1 cut(s) 130
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AsuHPI GGTGA 1 cut(s) 382
BalI TGGCCA 1 cut(s) 491
BamHI GGATCC 1 cut(s) 433
BanII GRGCYC 2 cut(s) 155, 421
BauI CACGAG 1 cut(s) 74
BbrPI CACGTG 1 cut(s) 334
Bbv12I GWGCWC 3 cut(s) 155, 339, 421
BbvCI CCTCAGC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 258
BccI CCATC 1 cut(s) 671
BceAI ACGGC 1 cut(s) 628
BciT130I CCWGG 2 cut(s) 361, 423
BcoDI GTCTC 2 cut(s) 347, 580
BglII AGATCT 1 cut(s) 277
BisI GCNGC 1 cut(s) 272
BlpI GCTNAGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 273
Bme1390I CCNGG 2 cut(s) 361, 423
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 2 cut(s) 361, 423
BmsI GCATC 1 cut(s) 509
BpmI CTGGAG 3 cut(s) 302, 405, 578
Bpu10I CCTNAGC 1 cut(s) 212
Bpu1102I GCTNAGC 1 cut(s) 267
BpuEI CTTGAG 3 cut(s) 323, 330, 647
Bsa29I ATCGAT 1 cut(s) 141
BsaAI YACGTR 2 cut(s) 317, 334
BsaBI GATNNNNATC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 580
BsaJI CCNNGG 2 cut(s) 550, 610
Bsc4I CCNNNNNNNGG 2 cut(s) 443, 444
Bse1I ACTGG 1 cut(s) 576
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 2 cut(s) 361, 423
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 550, 610
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 2 cut(s) 443, 444
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 3 cut(s) 203, 248, 258
BseNI ACTGG 1 cut(s) 576
BseRI GAGGAG 3 cut(s) 229, 398, 568
BseXI GCAGC 1 cut(s) 258
BseYI CCCAGC 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 525
BshFI GGCC 1 cut(s) 491
BshVI ATCGAT 1 cut(s) 141
BsiHKAI GWGCWC 3 cut(s) 155, 339, 421
BslFI GGGAC 2 cut(s) 233, 479
BslI CCNNNNNNNGG 2 cut(s) 443, 444
BsmAI GTCTC 2 cut(s) 347, 580
BsmFI GGGAC 2 cut(s) 233, 479
BsnI GGCC 1 cut(s) 491
Bso31I GGTCTC 1 cut(s) 580
Bsp1286I GDGCHC 3 cut(s) 155, 339, 421
Bsp1720I GCTNAGC 1 cut(s) 267
Bsp19I CCATGG 1 cut(s) 550
BspACI CCGC 1 cut(s) 564
BspANI GGCC 1 cut(s) 491
BspCNI CTCAG 3 cut(s) 204, 249, 259
BspDI ATCGAT 1 cut(s) 141
BspFNI CGCG 1 cut(s) 525
BspLI GGNNCC 1 cut(s) 435
BspPI GGATC 2 cut(s) 428, 441
BspTNI GGTCTC 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 1 cut(s) 576
BssECI CCNNGG 2 cut(s) 550, 610
BssSI CACGAG 1 cut(s) 74
BssT1I CCWWGG 1 cut(s) 550
Bst2BI CACGAG 1 cut(s) 74
Bst2UI CCWGG 2 cut(s) 361, 423
Bst4CI ACNGT 1 cut(s) 395
BstBAI YACGTR 2 cut(s) 317, 334
BstDEI CTNAG 3 cut(s) 212, 257, 267
BstDSI CCRYGG 2 cut(s) 550, 610
BstFNI CGCG 1 cut(s) 525
BstMAI GTCTC 2 cut(s) 347, 580
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 2 cut(s) 361, 423
BstSCI CCNGG 2 cut(s) 359, 421
BstUI CGCG 1 cut(s) 525
BstV1I GCAGC 1 cut(s) 258
BstX2I RGATCY 2 cut(s) 277, 433
BstXI CCANNNNNNTGG 1 cut(s) 557
BstYI RGATCY 2 cut(s) 277, 433
Bsu15I ATCGAT 1 cut(s) 141
BsuRI GGCC 1 cut(s) 491
BsuTUI ATCGAT 1 cut(s) 141
BtgI CCRYGG 2 cut(s) 550, 610
BtsIMutI CAGTG 2 cut(s) 60, 569
ClaI ATCGAT 1 cut(s) 141
CseI GACGC 1 cut(s) 514
Csp6I GTAC 1 cut(s) 328
CviAII CATG 6 cut(s) 242, 407, 551, 557, 638, 677
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 3 cut(s) 212, 257, 267
EaeI YGGCCR 1 cut(s) 489
Ecl136II GAGCTC 2 cut(s) 153, 419
Eco130I CCWWGG 1 cut(s) 550
Eco24I GRGCYC 2 cut(s) 155, 421
Eco31I GGTCTC 1 cut(s) 580
Eco53kI GAGCTC 2 cut(s) 153, 419
Eco72I CACGTG 1 cut(s) 334
EcoICRI GAGCTC 2 cut(s) 153, 419
EcoRII CCWGG 2 cut(s) 359, 421
EcoT14I CCWWGG 1 cut(s) 550
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 2 cut(s) 155, 421
ErhI CCWWGG 1 cut(s) 550
FaeI CATG 6 cut(s) 245, 410, 554, 560, 641, 680
FaqI GGGAC 2 cut(s) 233, 479
FatI CATG 6 cut(s) 241, 406, 550, 556, 637, 676
Fnu4HI GCNGC 1 cut(s) 272
FriOI GRGCYC 2 cut(s) 155, 421
Fsp4HI GCNGC 1 cut(s) 272
GluI GCNGC 1 cut(s) 272
GsaI CCCAGC 1 cut(s) 239
GsuI CTGGAG 3 cut(s) 302, 405, 578
HaeIII GGCC 1 cut(s) 491
HgaI GACGC 1 cut(s) 514
Hin1II CATG 6 cut(s) 245, 410, 554, 560, 641, 680
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 3 cut(s) 295, 343, 473
HpaI GTTAAC 1 cut(s) 202
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 4 cut(s) 202, 529, 569, 650
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 4 cut(s) 34, 281, 340, 595
Hpy8I GTNNAC 4 cut(s) 202, 529, 569, 650
HpyAV CCTTC 1 cut(s) 455
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 2 cut(s) 316, 333
HpyCH4V TGCA 4 cut(s) 274, 307, 406, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 3 cut(s) 212, 257, 267
HpySE526I ACGT 2 cut(s) 316, 333
Hsp92II CATG 6 cut(s) 245, 410, 554, 560, 641, 680
KspAI GTTAAC 1 cut(s) 202
LmnI GCTCC 4 cut(s) 150, 416, 424, 497
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 1 cut(s) 509
MaeII ACGT 2 cut(s) 316, 333
MboII GAAGA 4 cut(s) 25, 118, 139, 385
MflI RGATCY 2 cut(s) 277, 433
MhlI GDGCHC 3 cut(s) 155, 339, 421
MlsI TGGCCA 1 cut(s) 491
MluCI AATT 2 cut(s) 130, 397
MluNI TGGCCA 1 cut(s) 491
MlyI GAGTC 2 cut(s) 304, 337
Mox20I TGGCCA 1 cut(s) 491
Mph1103I ATGCAT 1 cut(s) 408
MscI TGGCCA 1 cut(s) 491
MseI TTAA 4 cut(s) 201, 249, 401, 694
MslI CAYNNNNRTG 3 cut(s) 411, 555, 675
Msp20I TGGCCA 1 cut(s) 491
MspR9I CCNGG 2 cut(s) 361, 423
MvaI CCWGG 2 cut(s) 361, 423
MvnI CGCG 1 cut(s) 525
MwoI GCNNNNNNNGC 1 cut(s) 497
NcoI CCATGG 1 cut(s) 550
NlaIII CATG 6 cut(s) 245, 410, 554, 560, 641, 680
NlaIV GGNNCC 1 cut(s) 435
NsiI ATGCAT 1 cut(s) 408
PfeI GAWTC 1 cut(s) 473
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 2 cut(s) 303, 337
PmaCI CACGTG 1 cut(s) 334
PmlI CACGTG 1 cut(s) 334
PpsI GAGTC 2 cut(s) 303, 337
Ppu21I YACGTR 2 cut(s) 317, 334
Psp124BI GAGCTC 2 cut(s) 155, 421
Psp6I CCWGG 2 cut(s) 359, 421
PspCI CACGTG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 235
PspGI CCWGG 2 cut(s) 359, 421
PspN4I GGNNCC 1 cut(s) 435
PsuI RGATCY 2 cut(s) 277, 433
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 3 cut(s) 411, 555, 675
SacI GAGCTC 2 cut(s) 155, 421
SaqAI TTAA 4 cut(s) 201, 249, 401, 694
SatI GCNGC 1 cut(s) 272
SchI GAGTC 2 cut(s) 304, 337
ScrFI CCNGG 2 cut(s) 361, 423
SduI GDGCHC 3 cut(s) 155, 339, 421
SfaNI GCATC 1 cut(s) 509
SmiMI CAYNNNNRTG 3 cut(s) 411, 555, 675
SmlI CTYRAG 3 cut(s) 338, 345, 626
SmoI CTYRAG 3 cut(s) 338, 345, 626
Sse9I AATT 2 cut(s) 130, 397
SsiI CCGC 1 cut(s) 564
SstI GAGCTC 2 cut(s) 155, 421
StyD4I CCNGG 2 cut(s) 359, 421
StyI CCWWGG 1 cut(s) 550
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 2 cut(s) 319, 336
TaqI TCGA 3 cut(s) 33, 141, 322
TasI AATT 2 cut(s) 130, 397
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 4 cut(s) 201, 249, 401, 694
Tru9I TTAA 4 cut(s) 201, 249, 401, 694
TscAI CASTG 2 cut(s) 67, 576
TseI GCWGC 1 cut(s) 271
TspDTI ATGAA 3 cut(s) 185, 474, 486
TspGWI ACGGA 2 cut(s) 292, 674
TspRI CASTG 2 cut(s) 67, 576
XapI RAATTY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 557
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.