Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013589

Physical Location & Seq

Genomic Coordinates Forward (+)

80715806 .. 80718908

Gene Structure 3103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGTCGTGGGAAGATTGAGATCAAGCTGATCGAGAACCAGACGAACAGGCAGGTGACCTATTCGAAGCGACGAAATGGGATCTTCAAGAAGGCTCAGGAGCTCACGGTTTTGTGTGACGCTCAGGTCTCCCTCATCATGCAGTCCTCCACTGACAAAATCCACGAGTATATTAGCCCTACCACTACGACCAAGAAGATGTTTGATCTCTACCAGAAGAATTTACAGATCGATCTATGGAGCTCACACTACGAGGCAATGAAAGAGAACTTGTGGAAACTGAAAGAGGTTAACAATAAGCTGAGAAGGGACATCAGGCAAAGGCTGGGGCATGATCTTAATGGTCTGAGCTATGCTGAGCTGCAAGATCTGGAGGAAACGATGAGTCAATCCGTGCAAATAATACGTGATCGAAAGTACCACGTGCTCAAGACTCAAGCAGAGACTACCAGGAAAAAGGTGAAGAACTTGGAGGAGAGAAACAGTAATTTAATGCATGGCTATGGAGCTCCAGGTAATGAGGATCCCCAATATGGGTATGTGGATAATGAAGGGGACTATGAATCTGCTGTTGCATTGGCCAATGGAGCATCAAACTTGTATTTTTTCAATCGCGTCCACAACAACCACAACCTTGACCATGGACATGGTGGCGGTTCACTGGTCTCCTCCATTACTCATCTCCAGAACCCTAATAACCACGGCAACCACAACCTTGAGAATGGACATGGTGGGGGTTCACTCATTTCCTCCATCACTCATCTCCATGATCTCCGTCTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

261

Amino Acids

29.78

Weight (kDa)

8.48

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 57	1.2e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	81 - 166	1.2e-20	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12260
malus_domestica	MD02G1136500.v1.1 MD15G1250200.v1.1
prunus_persica	Prupe.7G164100_v2.0.a1 Prupe.7G164100_v2.0.a1
pyrus_communis	pycom15g22050
rosa_chinensis	RchiOBHm_Chr2g0100071
rosa_laevigata	RLG00000016933
rosa_multiflora	Rmu_sc0000164.1_g000022
rosa_roxburghii	Rroxscaffold_2G00142600
rosa_rugosa	Rorug02G0085000 Rorug02G0085100 Rorug02G0085200
rosa_samantha	Rh2AG134100 Rh2BG137800 Rh2CG139200 Rh2DG139500
rosa_wichuraiana	Rw2G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
AasI	GACNNNNNNGTC	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	43
AccII	CGCG	1 cut(s)	615
AciI	CCGC	1 cut(s)	654
AclWI	GGATC	3 cut(s)	89, 518, 531
AcoI	YGGCCR	1 cut(s)	579
AcsI	RAATTY	1 cut(s)	220
AcvI	CACGTG	1 cut(s)	424
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	533, 534
AgsI	TTSAA	2 cut(s)	88, 610
AjnI	CCWGG	2 cut(s)	449, 511
AluBI	AGCT	7 cut(s)	28, 103, 243, 301, 351, 361, 509
AluI	AGCT	7 cut(s)	28, 103, 243, 301, 351, 361, 509
Alw21I	GWGCWC	4 cut(s)	105, 245, 429, 511
Alw26I	GTCTC	3 cut(s)	133, 437, 670
AlwI	GGATC	3 cut(s)	89, 518, 531
AoxI	GGCC	1 cut(s)	579
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	67, 472
AsuII	TTCGAA	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	581
BamHI	GGATCC	1 cut(s)	523
BanII	GRGCYC	3 cut(s)	105, 245, 511
BauI	CACGAG	1 cut(s)	164
BbrPI	CACGTG	1 cut(s)	424
Bbv12I	GWGCWC	4 cut(s)	105, 245, 429, 511
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	1 cut(s)	761
BceAI	ACGGC	1 cut(s)	718
BciT130I	CCWGG	2 cut(s)	451, 513
BcoDI	GTCTC	3 cut(s)	133, 437, 670
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	1 cut(s)	362
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	2 cut(s)	451, 513
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	2 cut(s)	451, 513
BmsI	GCATC	1 cut(s)	599
BpmI	CTGGAG	3 cut(s)	392, 495, 668
Bpu10I	CCTNAGC	2 cut(s)	96, 123
Bpu1102I	GCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	3 cut(s)	413, 420, 737
Bsa29I	ATCGAT	1 cut(s)	231
BsaAI	YACGTR	2 cut(s)	407, 424
BsaBI	GATNNNNATC	1 cut(s)	20
BsaI	GGTCTC	2 cut(s)	133, 670
BsaJI	CCNNGG	2 cut(s)	640, 700
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 534
Bse1I	ACTGG	1 cut(s)	666
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	451, 513
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	640, 700
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	533, 534
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	5 cut(s)	110, 137, 293, 338, 348
BseNI	ACTGG	1 cut(s)	666
BseRI	GAGGAG	2 cut(s)	488, 658
BseXI	GCAGC	1 cut(s)	348
BseYI	CCCAGC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	615
BshFI	GGCC	1 cut(s)	581
BshVI	ATCGAT	1 cut(s)	231
BsiHKAI	GWGCWC	4 cut(s)	105, 245, 429, 511
BslFI	GGGAC	2 cut(s)	323, 569
BslI	CCNNNNNNNGG	2 cut(s)	533, 534
BsmAI	GTCTC	3 cut(s)	133, 437, 670
BsmFI	GGGAC	2 cut(s)	323, 569
BsnI	GGCC	1 cut(s)	581
Bso31I	GGTCTC	2 cut(s)	133, 670
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	4 cut(s)	105, 245, 429, 511
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	640
BspACI	CCGC	1 cut(s)	654
BspANI	GGCC	1 cut(s)	581
BspCNI	CTCAG	5 cut(s)	109, 136, 294, 339, 349
BspDI	ATCGAT	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	615
BspLI	GGNNCC	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	89, 518, 531
BspT104I	TTCGAA	1 cut(s)	65
BspTNI	GGTCTC	2 cut(s)	133, 670
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	666
BssECI	CCNNGG	2 cut(s)	640, 700
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	640
Bst2BI	CACGAG	1 cut(s)	164
Bst2UI	CCWGG	2 cut(s)	451, 513
Bst4CI	ACNGT	2 cut(s)	109, 485
BstBAI	YACGTR	2 cut(s)	407, 424
BstBI	TTCGAA	1 cut(s)	65
BstDEI	CTNAG	5 cut(s)	96, 123, 302, 347, 357
BstDSI	CCRYGG	2 cut(s)	640, 700
BstEII	GGTNACC	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	615
BstMAI	GTCTC	3 cut(s)	133, 437, 670
BstMWI	GCNNNNNNNGC	1 cut(s)	587
BstNI	CCWGG	2 cut(s)	451, 513
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	2 cut(s)	449, 511
BstUI	CGCG	1 cut(s)	615
BstV1I	GCAGC	1 cut(s)	348
BstX2I	RGATCY	3 cut(s)	81, 367, 523
BstXI	CCANNNNNNTGG	1 cut(s)	647
BstYI	RGATCY	3 cut(s)	81, 367, 523
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	581
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	2 cut(s)	640, 700
BtsIMutI	CAGTG	2 cut(s)	150, 659
BveI	ACCTGC	1 cut(s)	43
ClaI	ATCGAT	1 cut(s)	231
CseI	GACGC	2 cut(s)	128, 604
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	7 cut(s)	139, 332, 497, 641, 647, 728, 767
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	5 cut(s)	96, 123, 302, 347, 357
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	579
Ecl136II	GAGCTC	3 cut(s)	103, 243, 509
Eco130I	CCWWGG	1 cut(s)	640
Eco24I	GRGCYC	3 cut(s)	105, 245, 511
Eco31I	GGTCTC	2 cut(s)	133, 670
Eco53kI	GAGCTC	3 cut(s)	103, 243, 509
Eco72I	CACGTG	1 cut(s)	424
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	3 cut(s)	103, 243, 509
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	449, 511
EcoT14I	CCWWGG	1 cut(s)	640
EcoT22I	ATGCAT	1 cut(s)	498
EcoT38I	GRGCYC	3 cut(s)	105, 245, 511
ErhI	CCWWGG	1 cut(s)	640
FaeI	CATG	7 cut(s)	142, 335, 500, 644, 650, 731, 770
FaqI	GGGAC	2 cut(s)	323, 569
FatI	CATG	7 cut(s)	138, 331, 496, 640, 646, 727, 766
Fnu4HI	GCNGC	1 cut(s)	362
FriOI	GRGCYC	3 cut(s)	105, 245, 511
Fsp4HI	GCNGC	1 cut(s)	362
GluI	GCNGC	1 cut(s)	362
GsaI	CCCAGC	1 cut(s)	329
GsuI	CTGGAG	3 cut(s)	392, 495, 668
HaeIII	GGCC	1 cut(s)	581
HgaI	GACGC	2 cut(s)	128, 604
Hin1II	CATG	7 cut(s)	142, 335, 500, 644, 650, 731, 770
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	3 cut(s)	385, 433, 563
HpaI	GTTAAC	1 cut(s)	292
HphI	GGTGA	2 cut(s)	67, 472
Hpy166II	GTNNAC	4 cut(s)	292, 619, 659, 740
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	6 cut(s)	34, 88, 98, 371, 430, 685
Hpy8I	GTNNAC	4 cut(s)	292, 619, 659, 740
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	3 cut(s)	85, 300, 545
HpyCH4III	ACNGT	2 cut(s)	109, 485
HpyCH4IV	ACGT	2 cut(s)	406, 423
HpyCH4V	TGCA	5 cut(s)	142, 364, 397, 496, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	587
HpyF3I	CTNAG	5 cut(s)	96, 123, 302, 347, 357
HpySE526I	ACGT	2 cut(s)	406, 423
Hsp92II	CATG	7 cut(s)	142, 335, 500, 644, 650, 731, 770
KspAI	GTTAAC	1 cut(s)	292
LmnI	GCTCC	5 cut(s)	100, 240, 506, 514, 587
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	599
MaeII	ACGT	2 cut(s)	406, 423
MaeIII	GTNAC	2 cut(s)	55, 116
MboII	GAAGA	5 cut(s)	25, 76, 208, 229, 475
MflI	RGATCY	3 cut(s)	81, 367, 523
MhlI	GDGCHC	4 cut(s)	105, 245, 429, 511
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	2 cut(s)	220, 487
MluNI	TGGCCA	1 cut(s)	581
MlyI	GAGTC	2 cut(s)	394, 427
MnlI	CCTC	9 cut(s)	143, 157, 247, 280, 367, 466, 514, 679, 760
Mox20I	TGGCCA	1 cut(s)	581
Mph1103I	ATGCAT	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	4 cut(s)	291, 339, 491, 784
MslI	CAYNNNNRTG	3 cut(s)	501, 645, 765
Msp20I	TGGCCA	1 cut(s)	581
MspR9I	CCNGG	2 cut(s)	451, 513
MvaI	CCWGG	2 cut(s)	451, 513
MvnI	CGCG	1 cut(s)	615
MwoI	GCNNNNNNNGC	1 cut(s)	587
NcoI	CCATGG	1 cut(s)	640
NlaIII	CATG	7 cut(s)	142, 335, 500, 644, 650, 731, 770
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	2 cut(s)	55, 116
NsiI	ATGCAT	1 cut(s)	498
NspV	TTCGAA	1 cut(s)	65
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	563
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	2 cut(s)	393, 427
PmaCI	CACGTG	1 cut(s)	424
PmlI	CACGTG	1 cut(s)	424
PpsI	GAGTC	2 cut(s)	393, 427
Ppu21I	YACGTR	2 cut(s)	407, 424
Psp124BI	GAGCTC	3 cut(s)	105, 245, 511
Psp6I	CCWGG	2 cut(s)	449, 511
PspCI	CACGTG	1 cut(s)	424
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	2 cut(s)	449, 511
PspN4I	GGNNCC	1 cut(s)	525
PsuI	RGATCY	3 cut(s)	81, 367, 523
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	3 cut(s)	501, 645, 765
SacI	GAGCTC	3 cut(s)	105, 245, 511
SaqAI	TTAA	4 cut(s)	291, 339, 491, 784
SatI	GCNGC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	394, 427
ScrFI	CCNGG	2 cut(s)	451, 513
SduI	GDGCHC	4 cut(s)	105, 245, 429, 511
SfaNI	GCATC	1 cut(s)	599
SfuI	TTCGAA	1 cut(s)	65
SmiMI	CAYNNNNRTG	3 cut(s)	501, 645, 765
SmlI	CTYRAG	3 cut(s)	428, 435, 716
SmoI	CTYRAG	3 cut(s)	428, 435, 716
Sse9I	AATT	2 cut(s)	220, 487
SsiI	CCGC	1 cut(s)	654
SstI	GAGCTC	3 cut(s)	105, 245, 511
StyD4I	CCNGG	2 cut(s)	449, 511
StyI	CCWWGG	1 cut(s)	640
TaaI	ACNGT	2 cut(s)	109, 485
TaiI	ACGT	2 cut(s)	409, 426
TaqI	TCGA	4 cut(s)	33, 65, 231, 412
TasI	AATT	2 cut(s)	220, 487
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	4 cut(s)	291, 339, 491, 784
Tru9I	TTAA	4 cut(s)	291, 339, 491, 784
TscAI	CASTG	2 cut(s)	157, 666
TseFI	GTSAC	2 cut(s)	55, 116
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	2 cut(s)	55, 116
TspDTI	ATGAA	3 cut(s)	275, 564, 576
TspGWI	ACGGA	2 cut(s)	382, 764
TspRI	CASTG	2 cut(s)	157, 666
XapI	RAATTY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.