Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0013589

Physical Location & Seq

Genomic Coordinates Forward (+)

16888994 .. 16891169

Gene Structure 2176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G164100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGTCGCGGGAAGATTGAGATCAAGCTGATTGAAAACCACACAAACAGGCAGGTGACCTACTCCAAGAGAAGAAACGGGATTTTCAAGAAGGCTCAGGAGCTCACCGTCCTCTGTGATGCCAGGGTCTCTCTCATCATGCTCTCCAACACTGGTAAAATGCACGAGTATATTAGCCCTACTACCACGACCAAGAACATGTATGATGATTACCAAAAAACTTTGGGGGTCGATCTGTGGAGCTCACACTACCAGGCAATGAAAGACACCTTGTGGAAACTGAAAGAGATCAACAATAAGCTGAGGAGAGAGATCAGGCAGAGGGTGGGTCATGATCTCAATGGCCTGACATATGATCAGCTGCGTTCTCTGGAGGATAAGATGGCTTCTTCCTTGGAGGCCATACGTGAAAGGAAGTACCACGTGCTCAAAACTCAGACGGAGACCTGCAAGAAGAAGGTGAAGAACTTGCAGGAAAGAAGAGGAAATATGCTACATGGTTATTTTGATCAGGAAGTAGCCTCTGAGGATCCACAATATGGGTACGTGGACAATGAGGGAGAATATGAATCTGCGGTTGCATTGGCAAATGGGGCGTCCAACTTGTTCACTATCCACCTCCACCAAGACATCCGTGACCACGCTAACCTCCACCACCACGGAGGAAGTTCGCTTGGCTCCTCCATTACTCATCTGCACGATCTGCGCCTCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

239

Amino Acids

27.49

Weight (kDa)

9.04

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12260
malus_domestica	MD02G1136500.v1.1 MD15G1250200.v1.1
prunus_persica	Prupe.7G164100_v2.0.a1 Prupe.7G164100_v2.0.a1
pyrus_communis	pycom15g22050
rosa_chinensis	RchiOBHm_Chr2g0100071
rosa_laevigata	RLG00000016933
rosa_multiflora	Rmu_sc0000164.1_g000022
rosa_roxburghii	Rroxscaffold_2G00142600
rosa_rugosa	Rorug02G0085000 Rorug02G0085100 Rorug02G0085200
rosa_samantha	Rh2AG134100 Rh2BG137800 Rh2CG139200 Rh2DG139500
rosa_wichuraiana	Rw2G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	2 cut(s)	43, 455
AccB7I	CCANNNNNTGG	1 cut(s)	539
AccII	CGCG	1 cut(s)	9
AciI	CCGC	2 cut(s)	9, 575
AclWI	GGATC	2 cut(s)	524, 537
AcvI	CACGTG	1 cut(s)	424
AcyI	GRCGYC	1 cut(s)	596
AdeI	CACNNNGTG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	419, 545
AfiI	CCNNNNNNNGG	1 cut(s)	539
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	35, 88
AjnI	CCWGG	2 cut(s)	122, 252
AluBI	AGCT	5 cut(s)	28, 103, 243, 301, 361
AluI	AGCT	5 cut(s)	28, 103, 243, 301, 361
Alw21I	GWGCWC	3 cut(s)	105, 245, 429
Alw26I	GTCTC	2 cut(s)	133, 437
AlwI	GGATC	2 cut(s)	524, 537
AoxI	GGCC	2 cut(s)	343, 399
ApeKI	GCWGC	1 cut(s)	361
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
AspLEI	GCGC	1 cut(s)	708
AsuHPI	GGTGA	3 cut(s)	67, 97, 472
BamHI	GGATCC	1 cut(s)	529
BanII	GRGCYC	2 cut(s)	105, 245
BauI	CACGAG	1 cut(s)	164
BbrPI	CACGTG	1 cut(s)	424
Bbv12I	GWGCWC	3 cut(s)	105, 245, 429
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	348
BccI	CCATC	1 cut(s)	376
BciT130I	CCWGG	2 cut(s)	124, 254
BclI	TGATCA	2 cut(s)	355, 508
BcoDI	GTCTC	2 cut(s)	133, 437
BfuAI	ACCTGC	2 cut(s)	43, 455
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	2 cut(s)	124, 254
BmiI	GGNNCC	2 cut(s)	531, 679
BmrFI	CCNGG	2 cut(s)	124, 254
BmsI	GCATC	1 cut(s)	109
BpmI	CTGGAG	1 cut(s)	392
Bpu10I	CCTNAGC	2 cut(s)	96, 302
BsaAI	YACGTR	3 cut(s)	407, 424, 547
BsaBI	GATNNNNATC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	596
BsaI	GGTCTC	2 cut(s)	133, 437
BsaJI	CCNNGG	3 cut(s)	123, 393, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	539
Bse1I	ACTGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	20
BseBI	CCWGG	2 cut(s)	124, 254
BseDI	CCNNGG	3 cut(s)	123, 393, 658
BseGI	GGATG	1 cut(s)	630
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	539
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	4 cut(s)	110, 293, 449, 516
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	319, 670
BseXI	GCAGC	1 cut(s)	348
BsgI	GTGCAG	1 cut(s)	680
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	345, 401
BsiHKAI	GWGCWC	3 cut(s)	105, 245, 429
BslI	CCNNNNNNNGG	1 cut(s)	539
BsmAI	GTCTC	2 cut(s)	133, 437
BsnI	GGCC	2 cut(s)	345, 401
Bso31I	GGTCTC	2 cut(s)	133, 437
Bsp1286I	GDGCHC	3 cut(s)	105, 245, 429
Bsp143I	GATC	9 cut(s)	21, 232, 288, 312, 334, 355, 508, 529, 700
BspACI	CCGC	2 cut(s)	9, 575
BspANI	GGCC	2 cut(s)	345, 401
BspCNI	CTCAG	4 cut(s)	109, 294, 448, 517
BspFNI	CGCG	1 cut(s)	9
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	531, 679
BspMI	ACCTGC	2 cut(s)	43, 455
BspPI	GGATC	2 cut(s)	524, 537
BspTNI	GGTCTC	2 cut(s)	133, 437
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	3 cut(s)	123, 393, 658
BssMI	GATC	9 cut(s)	21, 232, 288, 312, 334, 355, 508, 529, 700
BssNI	GRCGYC	1 cut(s)	596
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	164
Bst2UI	CCWGG	2 cut(s)	124, 254
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	475
BstACI	GRCGYC	1 cut(s)	596
BstAPI	GCANNNNNTGC	1 cut(s)	703
BstBAI	YACGTR	3 cut(s)	407, 424, 547
BstDEI	CTNAG	4 cut(s)	96, 302, 435, 525
BstDSI	CCRYGG	1 cut(s)	658
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	630
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	708
BstKTI	GATC	9 cut(s)	24, 235, 291, 315, 337, 358, 511, 532, 703
BstMAI	GTCTC	2 cut(s)	133, 437
BstMBI	GATC	9 cut(s)	21, 232, 288, 312, 334, 355, 508, 529, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	593, 703
BstNI	CCWGG	2 cut(s)	124, 254
BstNSI	RCATGY	1 cut(s)	202
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	2 cut(s)	122, 252
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	2 cut(s)	345, 401
BtgI	CCRYGG	1 cut(s)	658
BtsCI	GGATG	1 cut(s)	630
BtsIMutI	CAGTG	1 cut(s)	150
BveI	ACCTGC	2 cut(s)	43, 455
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	1 cut(s)	708
CseI	GACGC	1 cut(s)	585
Csp6I	GTAC	2 cut(s)	418, 544
CviAII	CATG	4 cut(s)	139, 199, 332, 497
CviQI	GTAC	2 cut(s)	418, 544
DdeI	CTNAG	4 cut(s)	96, 302, 435, 525
DpnI	GATC	9 cut(s)	23, 234, 290, 314, 336, 357, 510, 531, 702
DpnII	GATC	9 cut(s)	21, 232, 288, 312, 334, 355, 508, 529, 700
DraIII	CACNNNGTG	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	475
Ecl136II	GAGCTC	2 cut(s)	103, 243
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	2 cut(s)	105, 245
Eco31I	GGTCTC	2 cut(s)	133, 437
Eco53kI	GAGCTC	2 cut(s)	103, 243
Eco72I	CACGTG	1 cut(s)	424
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	2 cut(s)	103, 243
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	122, 252
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	2 cut(s)	105, 245
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	4 cut(s)	142, 202, 335, 500
FatI	CATG	4 cut(s)	138, 198, 331, 496
FauI	CCCGC	1 cut(s)	2
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	2 cut(s)	355, 508
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	1 cut(s)	617
FriOI	GRGCYC	2 cut(s)	105, 245
Fsp4HI	GCNGC	1 cut(s)	362
GlaI	GCGC	1 cut(s)	707
GluI	GCNGC	1 cut(s)	362
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	2 cut(s)	345, 401
HgaI	GACGC	1 cut(s)	585
HhaI	GCGC	1 cut(s)	708
Hin1I	GRCGYC	1 cut(s)	596
Hin1II	CATG	4 cut(s)	142, 202, 335, 500
Hin6I	GCGC	1 cut(s)	706
HinP1I	GCGC	1 cut(s)	706
HinfI	GANTC	1 cut(s)	569
HphI	GGTGA	3 cut(s)	67, 97, 472
Hpy166II	GTNNAC	2 cut(s)	550, 609
Hpy188I	TCNGA	2 cut(s)	438, 526
Hpy188III	TCNNGA	5 cut(s)	88, 98, 332, 371, 512
Hpy8I	GTNNAC	2 cut(s)	550, 609
HpyAV	CCTTC	2 cut(s)	85, 451
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	3 cut(s)	406, 423, 546
HpyCH4V	TGCA	5 cut(s)	163, 450, 472, 581, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	593, 703
HpyF3I	CTNAG	4 cut(s)	96, 302, 435, 525
HpySE526I	ACGT	3 cut(s)	406, 423, 546
Hsp92I	GRCGYC	1 cut(s)	596
Hsp92II	CATG	4 cut(s)	142, 202, 335, 500
HspAI	GCGC	1 cut(s)	706
Ksp22I	TGATCA	2 cut(s)	355, 508
Kzo9I	GATC	9 cut(s)	21, 232, 288, 312, 334, 355, 508, 529, 700
LmnI	GCTCC	3 cut(s)	100, 240, 683
Lsp1109I	GCAGC	1 cut(s)	348
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	3 cut(s)	406, 423, 546
MaeIII	GTNAC	2 cut(s)	55, 635
MalI	GATC	9 cut(s)	23, 234, 290, 314, 336, 357, 510, 531, 702
MboI	GATC	9 cut(s)	21, 232, 288, 312, 334, 355, 508, 529, 700
MboII	GAAGA	6 cut(s)	25, 84, 381, 466, 475, 492
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	3 cut(s)	105, 245, 429
MmeI	TCCRAC	2 cut(s)	171, 624
MspA1I	CMGCKG	1 cut(s)	361
MspR9I	CCNGG	2 cut(s)	124, 254
MvaI	CCWGG	2 cut(s)	124, 254
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	593, 703
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	9 cut(s)	21, 232, 288, 312, 334, 355, 508, 529, 700
NlaIII	CATG	4 cut(s)	142, 202, 335, 500
NlaIV	GGNNCC	2 cut(s)	531, 679
NmuCI	GTSAC	2 cut(s)	55, 635
NspI	RCATGY	1 cut(s)	202
PagI	TCATGA	1 cut(s)	331
PaqCI	CACCTGC	1 cut(s)	43
PciI	ACATGT	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	569
PflMI	CCANNNNNTGG	1 cut(s)	539
PkrI	GCNGC	1 cut(s)	363
PmaCI	CACGTG	1 cut(s)	424
PmlI	CACGTG	1 cut(s)	424
Ppu21I	YACGTR	3 cut(s)	407, 424, 547
PscI	ACATGT	1 cut(s)	198
Psp124BI	GAGCTC	2 cut(s)	105, 245
Psp6I	CCWGG	2 cut(s)	122, 252
PspCI	CACGTG	1 cut(s)	424
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	2 cut(s)	122, 252
PspN4I	GGNNCC	2 cut(s)	531, 679
PsuI	RGATCY	1 cut(s)	529
PvuII	CAGCTG	1 cut(s)	361
RsaI	GTAC	2 cut(s)	419, 545
RsaNI	GTAC	2 cut(s)	418, 544
SacI	GAGCTC	2 cut(s)	105, 245
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	9 cut(s)	21, 232, 288, 312, 334, 355, 508, 529, 700
ScrFI	CCNGG	2 cut(s)	124, 254
SduI	GDGCHC	3 cut(s)	105, 245, 429
SfaNI	GCATC	1 cut(s)	109
SsiI	CCGC	2 cut(s)	9, 575
SstI	GAGCTC	2 cut(s)	105, 245
StyD4I	CCNGG	2 cut(s)	122, 252
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	3 cut(s)	409, 426, 549
TaqI	TCGA	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	569
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	2 cut(s)	55, 635
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	2 cut(s)	55, 635
TspDTI	ATGAA	2 cut(s)	275, 582
TspGWI	ACGGA	3 cut(s)	455, 623, 675
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	539
XceI	RCATGY	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.