Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013589

Physical Location & Seq

Genomic Coordinates Reverse (-)

11386989 .. 11389684

Gene Structure 2696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1136500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGTCGTGGGAAGATTGAAATCAAGCTGATCGAAAACCAGACCAACAGGCAGGTGACCTACTCCAAGAGAAGAAATGGGATCTTCAAGAAGGCTCAGGAGCTCACCGTTCTCTGTGATGCCAAGGTCTCCCTCATTATGCTCTCCAACACTAATAAAATGCACGAGTATATCAGCCCTACCACTACGACCAAGAGTATGTATGATGACTATCAGAAAACTATGGGGATCGATCTGTGGAGGACACACGAGGAGTCGATGAAAGACACCTTGTGGAAGTTGAAAGAGATCAACAATAAGCTGAGGAGAGAGATCAGGCAGAGGTTGGGCCATGATCTAAATGGCCTGAGCTTTGACGAGCTGGCTTCTCTTGACGATGAGATGCAGTCTTCCTTGGATGCCATACGTCAAAGGAAGTACCATGTGATCAAAACTCAGACGGAGACCACCAAGAAGAAGGTTAAGAACTTGGAGCAAAGAAGAGGAAACATGCTGCATGGCTATTTTGACCAGGAAGCAGCCGGCGAGGATCCACAGTATGGTTATGAGGACAATGAGGGAGACTACGAATCTGCACTTGCATTGTCAAATGGGGCGAATAACTTGTACACTTTCCACCTCCACCACCCTAACCTCCACCACGGAGGAAGTTCCCTCGGCTCCTCCATTACTCATCTGCACGATCTCCGCCTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

233

Amino Acids

26.84

Weight (kDa)

7.87

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 57	2.6e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	82 - 164	3.2e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12260
malus_domestica	MD02G1136500.v1.1 MD15G1250200.v1.1
prunus_persica	Prupe.7G164100_v2.0.a1 Prupe.7G164100_v2.0.a1
pyrus_communis	pycom15g22050
rosa_chinensis	RchiOBHm_Chr2g0100071
rosa_laevigata	RLG00000016933
rosa_multiflora	Rmu_sc0000164.1_g000022
rosa_roxburghii	Rroxscaffold_2G00142600
rosa_rugosa	Rorug02G0085000 Rorug02G0085100 Rorug02G0085200
rosa_samantha	Rh2AG134100 Rh2BG137800 Rh2CG139200 Rh2DG139500
rosa_wichuraiana	Rw2G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	539
AciI	CCGC	1 cut(s)	688
AclWI	GGATC	4 cut(s)	89, 236, 524, 537
AdeI	CACNNNGTG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	419, 608
AfiI	CCNNNNNNNGG	1 cut(s)	539
AgsI	TTSAA	3 cut(s)	20, 88, 283
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	5 cut(s)	28, 103, 301, 351, 361
AluI	AGCT	5 cut(s)	28, 103, 301, 351, 361
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	3 cut(s)	133, 437, 555
AlwI	GGATC	4 cut(s)	89, 236, 524, 537
AoxI	GGCC	2 cut(s)	328, 343
ApeKI	GCWGC	2 cut(s)	493, 518
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	2 cut(s)	67, 97
BamHI	GGATCC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	105
BauI	CACGAG	2 cut(s)	164, 248
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	480, 530
BciT130I	CCWGG	1 cut(s)	512
BclI	TGATCA	1 cut(s)	426
BcoDI	GTCTC	3 cut(s)	133, 437, 555
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	494, 519
BlsI	GCNGC	2 cut(s)	495, 520
Bme1390I	CCNGG	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	2 cut(s)	531, 661
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	3 cut(s)	109, 372, 388
BpiI	GAAGAC	1 cut(s)	381
Bpu10I	CCTNAGC	3 cut(s)	96, 302, 347
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	2 cut(s)	20, 210
BsaI	GGTCTC	2 cut(s)	133, 437
BsaJI	CCNNGG	4 cut(s)	123, 393, 640, 655
Bsc4I	CCNNNNNNNGG	1 cut(s)	539
Bse118I	RCCGGY	1 cut(s)	521
Bse8I	GATNNNNATC	2 cut(s)	20, 210
BseBI	CCWGG	1 cut(s)	512
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	4 cut(s)	123, 393, 640, 655
BseGI	GGATG	1 cut(s)	403
BseJI	GATNNNNATC	2 cut(s)	20, 210
BseLI	CCNNNNNNNGG	1 cut(s)	539
BseMII	CTCAG	4 cut(s)	110, 293, 338, 449
BseRI	GAGGAG	3 cut(s)	266, 319, 652
BseXI	GCAGC	2 cut(s)	480, 530
BsgI	GTGCAG	2 cut(s)	558, 662
BshFI	GGCC	2 cut(s)	330, 345
BshVI	ATCGAT	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	522
BslI	CCNNNNNNNGG	1 cut(s)	539
BsmAI	GTCTC	3 cut(s)	133, 437, 555
BsnI	GGCC	2 cut(s)	330, 345
Bso31I	GGTCTC	2 cut(s)	133, 437
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	606
BspACI	CCGC	1 cut(s)	688
BspANI	GGCC	2 cut(s)	330, 345
BspCNI	CTCAG	4 cut(s)	109, 294, 339, 448
BspDI	ATCGAT	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	531, 661
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	4 cut(s)	89, 236, 524, 537
BspTNI	GGTCTC	2 cut(s)	133, 437
BsrFI	RCCGGY	1 cut(s)	521
BsrGI	TGTACA	1 cut(s)	606
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	4 cut(s)	123, 393, 640, 655
BssSI	CACGAG	2 cut(s)	164, 248
BssT1I	CCWWGG	2 cut(s)	123, 393
Bst2BI	CACGAG	2 cut(s)	164, 248
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	109, 537
Bst6I	CTCTTC	1 cut(s)	475
BstAUI	TGTACA	1 cut(s)	606
BstC8I	GCNNGC	2 cut(s)	363, 523
BstDEI	CTNAG	4 cut(s)	96, 302, 347, 435
BstDSI	CCRYGG	1 cut(s)	640
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	403
BstMAI	GTCTC	3 cut(s)	133, 437, 555
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	493
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	480, 530
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	2 cut(s)	81, 529
BstYI	RGATCY	2 cut(s)	81, 529
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	330, 345
BsuTUI	ATCGAT	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	640
BtsCI	GGATG	1 cut(s)	403
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	363, 523
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	328
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	418, 607
CviAII	CATG	4 cut(s)	332, 422, 490, 497
CviQI	GTAC	2 cut(s)	418, 607
DdeI	CTNAG	4 cut(s)	96, 302, 347, 435
DraIII	CACNNNGTG	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	475
EciI	GGCGGA	1 cut(s)	677
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	123, 393
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	133, 437
Eco53kI	GAGCTC	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	2 cut(s)	123, 393
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	123, 393
FaeI	CATG	4 cut(s)	335, 425, 493, 500
FatI	CATG	4 cut(s)	331, 421, 489, 496
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	494, 519
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	494, 519
GluI	GCNGC	2 cut(s)	494, 519
HaeIII	GGCC	2 cut(s)	330, 345
HapII	CCGG	1 cut(s)	522
Hin1II	CATG	4 cut(s)	335, 425, 493, 500
HinfI	GANTC	2 cut(s)	254, 569
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	2 cut(s)	67, 97
Hpy166II	GTNNAC	1 cut(s)	609
Hpy188I	TCNGA	2 cut(s)	216, 438
Hpy188III	TCNNGA	3 cut(s)	88, 98, 371
Hpy8I	GTNNAC	1 cut(s)	609
HpyAV	CCTTC	2 cut(s)	85, 451
HpyCH4III	ACNGT	2 cut(s)	109, 537
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	6 cut(s)	163, 385, 496, 575, 581, 679
HpyF3I	CTNAG	4 cut(s)	96, 302, 347, 435
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	4 cut(s)	335, 425, 493, 500
KroI	GCCGGC	1 cut(s)	521
KroNI	GCCGGC	1 cut(s)	523
Ksp22I	TGATCA	1 cut(s)	426
LmnI	GCTCC	3 cut(s)	100, 472, 665
Lsp1109I	GCAGC	2 cut(s)	480, 530
LweI	GCATC	3 cut(s)	109, 372, 388
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	55
MboII	GAAGA	6 cut(s)	25, 76, 84, 381, 466, 492
MflI	RGATCY	2 cut(s)	81, 529
MhlI	GDGCHC	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	171
MroNI	GCCGGC	1 cut(s)	521
MseI	TTAA	1 cut(s)	462
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	512
NaeI	GCCGGC	1 cut(s)	523
NgoMIV	GCCGGC	1 cut(s)	521
NlaIII	CATG	4 cut(s)	335, 425, 493, 500
NlaIV	GGNNCC	2 cut(s)	531, 661
NmeAIII	GCCGAG	1 cut(s)	636
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	493
PaqCI	CACCTGC	1 cut(s)	43
PdiI	GCCGGC	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	569
PflMI	CCANNNNNTGG	1 cut(s)	539
PkrI	GCNGC	2 cut(s)	495, 520
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	510
PspEI	GGTNACC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	2 cut(s)	531, 661
PspPI	GGNCC	1 cut(s)	328
PsuI	RGATCY	2 cut(s)	81, 529
RsaI	GTAC	2 cut(s)	419, 608
RsaNI	GTAC	2 cut(s)	418, 607
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	2 cut(s)	494, 519
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	3 cut(s)	109, 372, 388
SsiI	CCGC	1 cut(s)	688
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	2 cut(s)	123, 393
TaaI	ACNGT	2 cut(s)	109, 537
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	3 cut(s)	33, 231, 257
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	493, 518
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	2 cut(s)	455, 657
Van91I	CCANNNNNTGG	1 cut(s)	539
XceI	RCATGY	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.