Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013589

Physical Location & Seq

Genomic Coordinates Reverse (-)

20927117 .. 20929746

Gene Structure 2630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1250200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGTCGTGGAAAGATTGAGATCAAGCTGATCGAAAACCAGACCAACAGGCAGGTGACCTACTCCAAGAGAAGAAATGGGATCTTCAAGAAGGCTCAGGAGCTCACCGTTCTCTGTGATGCCAAGGTCTCCCTCATCATGCTCTCCAACACTAGTAAAATGCACGAGTATATCAGCCCTTCCACTACGACCAAGAGTATGTATGATGACTATCAGAAAACTATGGGGATCGATCTATGGAGGACACACTACGAGTCTATGAAAGACACCTTGTGGAAGTTGAAAGAGATCAACAATAAGCTGAGGAGAGAGATCAGGCAGAGGTTGGGCCATGATCTAAATGGTCTGAGCTATGACGATCTCCGTTCTCTTGAGGATAAGATGCAATCTTCCTTAGATGCCATACGTGAAAGAAAGTACCATGTGATCAAAACTCAAACGGAGACCACCAAGAAGAAGGTTAAGAACTTGGAGGAAAGAAGAGGAAACATGCTGCATGGCTATGAAGCTGCCAGTGAGAATCCACAATATTGTTATGTGGACAATGAGGGAGACTATGAATCTGCACTTGTATTGGCAAATGGGGCAAATAACTTGTACACTTTCCAGCTCCACCGCAACTCCGACCAGCTCCACCACCCTAACCTCCACCACCACAGAGGAAGTTCGCTCGGCTCCTCCATCACTCATCTACATGATCTCCGCCTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

238

Amino Acids

27.68

Weight (kDa)

9.24

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 57	1.1e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	82 - 164	2.1e-20	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12260
malus_domestica	MD02G1136500.v1.1 MD15G1250200.v1.1
prunus_persica	Prupe.7G164100_v2.0.a1 Prupe.7G164100_v2.0.a1
pyrus_communis	pycom15g22050
rosa_chinensis	RchiOBHm_Chr2g0100071
rosa_laevigata	RLG00000016933
rosa_multiflora	Rmu_sc0000164.1_g000022
rosa_roxburghii	Rroxscaffold_2G00142600
rosa_rugosa	Rorug02G0085000 Rorug02G0085100 Rorug02G0085200
rosa_samantha	Rh2AG134100 Rh2BG137800 Rh2CG139200 Rh2DG139500
rosa_wichuraiana	Rw2G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	2 cut(s)	616, 703
AclWI	GGATC	2 cut(s)	89, 236
AdeI	CACNNNGTG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	419, 599
AgsI	TTSAA	2 cut(s)	88, 283
AhlI	ACTAGT	1 cut(s)	152
AluBI	AGCT	7 cut(s)	28, 103, 301, 351, 509, 610, 631
AluI	AGCT	7 cut(s)	28, 103, 301, 351, 509, 610, 631
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	3 cut(s)	133, 437, 546
AlwI	GGATC	2 cut(s)	89, 236
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	2 cut(s)	493, 509
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	2 cut(s)	67, 97
BanII	GRGCYC	1 cut(s)	105
BauI	CACGAG	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	480, 496
BccI	CCATC	1 cut(s)	689
BclI	TGATCA	1 cut(s)	426
BcoDI	GTCTC	3 cut(s)	133, 437, 546
BcuI	ACTAGT	1 cut(s)	152
BfaI	CTAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	494, 510
BlsI	GCNGC	2 cut(s)	495, 511
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	676
BmsI	GCATC	3 cut(s)	109, 372, 388
Bpu10I	CCTNAGC	2 cut(s)	96, 302
BpuEI	CTTGAG	1 cut(s)	392
Bsa29I	ATCGAT	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	407
BsaBI	GATNNNNATC	2 cut(s)	20, 210
BsaI	GGTCTC	2 cut(s)	133, 437
BsaJI	CCNNGG	1 cut(s)	123
BsaXI	ACNNNNNCTCC	4 cut(s)	605, 635, 684, 714
Bse1I	ACTGG	1 cut(s)	513
Bse8I	GATNNNNATC	2 cut(s)	20, 210
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	123
BseJI	GATNNNNATC	2 cut(s)	20, 210
BseMII	CTCAG	3 cut(s)	110, 293, 338
BseNI	ACTGG	1 cut(s)	513
BseRI	GAGGAG	2 cut(s)	319, 667
BseXI	GCAGC	2 cut(s)	480, 496
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	1 cut(s)	330
BshVI	ATCGAT	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	105
BsmAI	GTCTC	3 cut(s)	133, 437, 546
BsnI	GGCC	1 cut(s)	330
Bso31I	GGTCTC	2 cut(s)	133, 437
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	597
BspACI	CCGC	2 cut(s)	616, 703
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	3 cut(s)	109, 294, 339
BspDI	ATCGAT	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	676
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	89, 236
BspTNI	GGTCTC	2 cut(s)	133, 437
BsrGI	TGTACA	1 cut(s)	597
BsrI	ACTGG	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	123
Bst2BI	CACGAG	1 cut(s)	164
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	475
BstAUI	TGTACA	1 cut(s)	597
BstBAI	YACGTR	1 cut(s)	407
BstDEI	CTNAG	4 cut(s)	96, 302, 347, 394
BstEII	GGTNACC	1 cut(s)	55
BstMAI	GTCTC	3 cut(s)	133, 437, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	493
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	480, 496
BstX2I	RGATCY	1 cut(s)	81
BstYI	RGATCY	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	330
BsuTUI	ATCGAT	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	520
BveI	ACCTGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	328
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	418, 598
CviAII	CATG	6 cut(s)	139, 332, 422, 490, 497, 695
CviQI	GTAC	2 cut(s)	418, 598
DdeI	CTNAG	4 cut(s)	96, 302, 347, 394
DraIII	CACNNNGTG	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	475
EciI	GGCGGA	1 cut(s)	692
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	2 cut(s)	133, 437
Eco53kI	GAGCTC	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	6 cut(s)	142, 335, 425, 493, 500, 698
FatI	CATG	6 cut(s)	138, 331, 421, 489, 496, 694
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	494, 510
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	2 cut(s)	494, 510
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	2 cut(s)	494, 510
HaeIII	GGCC	1 cut(s)	330
Hin1II	CATG	6 cut(s)	142, 335, 425, 493, 500, 698
HinfI	GANTC	3 cut(s)	254, 520, 560
HphI	GGTGA	2 cut(s)	67, 97
Hpy166II	GTNNAC	2 cut(s)	541, 600
Hpy188I	TCNGA	3 cut(s)	216, 348, 625
Hpy188III	TCNNGA	3 cut(s)	88, 98, 371
Hpy8I	GTNNAC	2 cut(s)	541, 600
HpyAV	CCTTC	3 cut(s)	85, 189, 451
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	4 cut(s)	163, 385, 496, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	584
HpyF3I	CTNAG	4 cut(s)	96, 302, 347, 394
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	6 cut(s)	142, 335, 425, 493, 500, 698
Ksp22I	TGATCA	1 cut(s)	426
LmnI	GCTCC	4 cut(s)	100, 615, 636, 680
LpnPI	CCDG	8 cut(s)	34, 38, 53, 83, 301, 526, 620, 641
Lsp1109I	GCAGC	2 cut(s)	480, 496
LweI	GCATC	3 cut(s)	109, 372, 388
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	55
MboII	GAAGA	5 cut(s)	76, 84, 381, 466, 492
MflI	RGATCY	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	2 cut(s)	171, 648
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	2 cut(s)	501, 693
MwoI	GCNNNNNNNGC	1 cut(s)	584
NlaIII	CATG	6 cut(s)	142, 335, 425, 493, 500, 698
NlaIV	GGNNCC	1 cut(s)	676
NmeAIII	GCCGAG	1 cut(s)	651
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	493
PaqCI	CACCTGC	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	520, 560
PkrI	GCNGC	2 cut(s)	495, 511
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Ppu21I	YACGTR	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	105
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	676
PspPI	GGNCC	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	2 cut(s)	419, 599
RsaNI	GTAC	2 cut(s)	418, 598
RseI	CAYNNNNRTG	2 cut(s)	501, 693
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	2 cut(s)	494, 510
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	3 cut(s)	109, 372, 388
SmiMI	CAYNNNNRTG	2 cut(s)	501, 693
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SpeI	ACTAGT	1 cut(s)	152
SsiI	CCGC	2 cut(s)	616, 703
SspI	AATATT	1 cut(s)	530
SspMI	CTAG	1 cut(s)	153
SstI	GAGCTC	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	2 cut(s)	33, 231
TatI	WGTACW	1 cut(s)	597
TfiI	GAWTC	2 cut(s)	520, 560
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	493, 509
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	275, 519, 573
TspGWI	ACGGA	2 cut(s)	353, 455
TspRI	CASTG	1 cut(s)	520
XceI	RCATGY	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.