Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013589

Physical Location & Seq

Genomic Coordinates Forward (+)

6831623 .. 6833168

Gene Structure 1546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0085200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTATACGAGGGAGAGATCGTCTTTTCAGGAAGACAAGTTCCCAGGAGGAGGAGGAAGAAGGAGAAGAAACCCTTCTTTCTCTTCTTCTCTTCTCGACTCTATTTACCGCTCGATTGACGAATCGAACGGTGTCGATCCGGGCTTTGTCAGAGAGTCGAAGAAACAGAGCAGCTCTGTTTCCAAGCGTGAAGAGACTAAAGGAGGCAGCGGGAAGACCAATCTTCGCCGAGCCATGATGATCGAGAATTGGGTTGAGAGGCAAAGCGTTCATAGCTCTATGTTCACGAACTCGGCTTCCAGTTCTTCAGAGTCGAGCTCCGGAGCTGCATTTTCGTCTTCGGATCAAACAGAGTCGAGCTACAAAAGACGGTCGAAACAGAGTCCGGCAGTAGTGGTCTCTGTTCGCTCCGAGAATATGGAGAAGCCGAAAAGCGAGAGTGGAAGTGGAGGCGGGTTTACGAAGACGAAGCTTAGAGCTCTGAAAATCTACGGCGAATTGAAGAAAGCCAAGCAACCCATTTCGCCGGGAGGGAAAATTGCGAGCTTCATCAACTCGATTTTCAATTCCGGGAACGTCAAGAAAGCCAAGATGTGCTATGTTGGAGCTGTAGAAGACGTGAGTACTTCAGAGCATGTAACCAAGTCTACATACTCTTCTTCTTCGGCTTCAACTTTTTCAAGGTCTTGTTTGAGCAAACCTTCTTCAAGGTCCAAGAAATCGAGCAATGGCAACAAAAGGTCCGTGAGGTTTTACCCAATAAGTGTGATTCTTGGTGAAGATGACACTCAAATTTCAAGCCATAAATGTGTTTATGAACAAGATCCTAGCTTGATGCCAAAACCCACATTTCAAAAATTTGCAAGAACTCCAGGTCAAAATTTCCGGAGGAGCTTATGTGAAGATGGTGATGATGAGGAAAGTGATGCTGAGAGTTATTCAAGTTCGGATCTTTTCGAGCTCAATCAACCAGTTGGGATTGGTAGATATAGAGAAGAACTTCCGGTTTATGAAACCACTAATGTCAGAACCAATCAAGCCATTGCCAAAGGCTTGATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

354

Amino Acids

38.94

Weight (kDa)

9.57

Isoelectric Point (pI)

73.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013589)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12260
malus_domestica	MD02G1136500.v1.1 MD15G1250200.v1.1
prunus_persica	Prupe.7G164100_v2.0.a1 Prupe.7G164100_v2.0.a1
pyrus_communis	pycom15g22050
rosa_chinensis	RchiOBHm_Chr2g0100071
rosa_laevigata	RLG00000016933
rosa_multiflora	Rmu_sc0000164.1_g000022
rosa_roxburghii	Rroxscaffold_2G00142600
rosa_rugosa	Rorug02G0085000 Rorug02G0085100 Rorug02G0085200
rosa_samantha	Rh2AG134100 Rh2BG137800 Rh2CG139200 Rh2DG139500
rosa_wichuraiana	Rw2G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	111
AccI	GTMKAC	2 cut(s)	5, 647
AccIII	TCCGGA	2 cut(s)	320, 885
AciI	CCGC	3 cut(s)	109, 210, 453
AclWI	GGATC	4 cut(s)	131, 351, 818, 957
AcsI	RAATTY	3 cut(s)	792, 857, 880
AcuI	CTGAAG	2 cut(s)	291, 612
AfaI	GTAC	1 cut(s)	625
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	8 cut(s)	502, 565, 672, 681, 708, 798, 854, 942
AjiI	CACGTC	1 cut(s)	619
AjnI	CCWGG	2 cut(s)	43, 871
AloI	GAACNNNNNNTCC	4 cut(s)	23, 55, 281, 313
Alw21I	GWGCWC	3 cut(s)	320, 481, 963
Alw26I	GTCTC	2 cut(s)	188, 403
AlwI	GGATC	4 cut(s)	131, 351, 818, 957
Aor13HI	TCCGGA	2 cut(s)	320, 885
ApeKI	GCWGC	3 cut(s)	171, 207, 326
ApoI	RAATTY	3 cut(s)	792, 857, 880
Asp700I	GAANNNNTTC	2 cut(s)	73, 999
AspS9I	GGNCC	2 cut(s)	711, 741
AsuC2I	CCSGG	3 cut(s)	141, 528, 571
AsuHPI	GGTGA	2 cut(s)	788, 920
AvaII	GGWCC	2 cut(s)	711, 741
BanII	GRGCYC	3 cut(s)	320, 481, 963
BbsI	GAAGAC	5 cut(s)	39, 221, 330, 470, 621
Bbv12I	GWGCWC	3 cut(s)	320, 481, 963
BbvI	GCAGC	3 cut(s)	183, 219, 313
BccI	CCATC	1 cut(s)	899
BceAI	ACGGC	1 cut(s)	508
BciT130I	CCWGG	2 cut(s)	45, 873
BcnI	CCSGG	3 cut(s)	141, 528, 571
BcoDI	GTCTC	2 cut(s)	188, 403
BfaI	CTAG	1 cut(s)	828
BfmI	CTRYAG	1 cut(s)	609
BisI	GCNGC	3 cut(s)	172, 208, 327
BlsI	GCNGC	3 cut(s)	173, 209, 328
BmcAI	AGTACT	1 cut(s)	625
Bme1390I	CCNGG	5 cut(s)	45, 141, 528, 571, 873
Bme18I	GGWCC	2 cut(s)	711, 741
BmgBI	CACGTC	1 cut(s)	619
BmgT120I	GGNCC	2 cut(s)	711, 741
BmrFI	CCNGG	5 cut(s)	45, 141, 528, 571, 873
BmsI	GCATC	2 cut(s)	825, 916
BpiI	GAAGAC	5 cut(s)	39, 221, 330, 470, 621
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpmI	CTGGAG	1 cut(s)	855
BpuMI	CCSGG	3 cut(s)	141, 528, 571
BsaI	GGTCTC	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	43
BsaWI	WCCGGW	3 cut(s)	320, 885, 1003
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 883, 913
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	300, 971
Bse3DI	GCAATG	2 cut(s)	733, 1041
BseAI	TCCGGA	2 cut(s)	320, 885
BseBI	CCWGG	2 cut(s)	45, 873
BseDI	CCNNGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	2 cut(s)	733, 1041
BseMII	CTCAG	1 cut(s)	921
BseNI	ACTGG	2 cut(s)	300, 971
BseRI	GAGGAG	3 cut(s)	63, 66, 904
BseXI	GCAGC	3 cut(s)	183, 219, 313
Bsh1285I	CGRYCG	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	374
BsiHKAI	GWGCWC	3 cut(s)	320, 481, 963
BsiSI	CCGG	7 cut(s)	140, 321, 386, 527, 570, 886, 1004
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	2 cut(s)	188, 403
Bso31I	GGTCTC	1 cut(s)	403
Bsp1286I	GDGCHC	3 cut(s)	320, 481, 963
Bsp13I	TCCGGA	2 cut(s)	320, 885
Bsp143I	GATC	6 cut(s)	17, 136, 240, 343, 823, 949
BspACI	CCGC	3 cut(s)	109, 210, 453
BspCNI	CTCAG	1 cut(s)	922
BspEI	TCCGGA	2 cut(s)	320, 885
BspPI	GGATC	4 cut(s)	131, 351, 818, 957
BspTNI	GGTCTC	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	111
BsrDI	GCAATG	2 cut(s)	733, 1041
BsrI	ACTGG	2 cut(s)	300, 971
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	6 cut(s)	17, 136, 240, 343, 823, 949
BssNAI	GTATAC	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	45, 873
Bst4CI	ACNGT	2 cut(s)	131, 372
Bst6I	CTCTTC	4 cut(s)	88, 96, 186, 661
BstC8I	GCNNGC	1 cut(s)	544
BstDEI	CTNAG	2 cut(s)	473, 930
BstKTI	GATC	6 cut(s)	20, 139, 243, 346, 826, 952
BstMAI	GTCTC	2 cut(s)	188, 403
BstMBI	GATC	6 cut(s)	17, 136, 240, 343, 823, 949
BstMCI	CGRYCG	1 cut(s)	374
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstNI	CCWGG	2 cut(s)	45, 873
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	5 cut(s)	43, 139, 526, 569, 871
BstSFI	CTRYAG	1 cut(s)	609
BstV1I	GCAGC	3 cut(s)	183, 219, 313
BstV2I	GAAGAC	5 cut(s)	39, 221, 330, 470, 621
BstX2I	RGATCY	2 cut(s)	823, 949
BstYI	RGATCY	2 cut(s)	823, 949
BstZ17I	GTATAC	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	619
Cac8I	GCNNGC	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	711, 741
Csp6I	GTAC	1 cut(s)	624
CviAII	CATG	2 cut(s)	235, 635
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	2 cut(s)	473, 930
DpnI	GATC	6 cut(s)	19, 138, 242, 345, 825, 951
DpnII	GATC	6 cut(s)	17, 136, 240, 343, 823, 949
Eam1104I	CTCTTC	4 cut(s)	88, 96, 186, 661
EarI	CTCTTC	4 cut(s)	88, 96, 186, 661
Ecl136II	GAGCTC	3 cut(s)	318, 479, 961
Eco24I	GRGCYC	3 cut(s)	320, 481, 963
Eco31I	GGTCTC	1 cut(s)	403
Eco47I	GGWCC	2 cut(s)	711, 741
Eco53kI	GAGCTC	3 cut(s)	318, 479, 961
Eco57I	CTGAAG	2 cut(s)	291, 612
EcoICRI	GAGCTC	3 cut(s)	318, 479, 961
EcoRII	CCWGG	2 cut(s)	43, 871
EcoT38I	GRGCYC	3 cut(s)	320, 481, 963
FaeI	CATG	2 cut(s)	238, 638
FalI	AAGNNNNNCTT	2 cut(s)	58, 90
FatI	CATG	2 cut(s)	234, 634
FauI	CCCGC	2 cut(s)	203, 446
FblI	GTMKAC	2 cut(s)	5, 647
Fnu4HI	GCNGC	3 cut(s)	172, 208, 327
FriOI	GRGCYC	3 cut(s)	320, 481, 963
Fsp4HI	GCNGC	3 cut(s)	172, 208, 327
FspBI	CTAG	1 cut(s)	828
GluI	GCNGC	3 cut(s)	172, 208, 327
GsuI	CTGGAG	1 cut(s)	855
HapII	CCGG	7 cut(s)	140, 321, 386, 527, 570, 886, 1004
Hin1II	CATG	2 cut(s)	238, 638
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	7 cut(s)	98, 122, 155, 311, 353, 382, 769
HpaII	CCGG	7 cut(s)	140, 321, 386, 527, 570, 886, 1004
HphI	GGTGA	2 cut(s)	788, 920
Hpy166II	GTNNAC	4 cut(s)	6, 285, 459, 648
Hpy188I	TCNGA	8 cut(s)	152, 310, 343, 412, 483, 631, 949, 1028
Hpy188III	TCNNGA	7 cut(s)	29, 95, 244, 286, 321, 580, 886
Hpy8I	GTNNAC	4 cut(s)	6, 285, 459, 648
HpyAV	CCTTC	3 cut(s)	54, 84, 711
HpyCH4III	ACNGT	2 cut(s)	131, 372
HpyCH4IV	ACGT	2 cut(s)	576, 618
HpyCH4V	TGCA	2 cut(s)	329, 863
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	2 cut(s)	473, 930
HpySE526I	ACGT	2 cut(s)	576, 618
Hsp92II	CATG	2 cut(s)	238, 638
Kpn2I	TCCGGA	2 cut(s)	320, 885
Kzo9I	GATC	6 cut(s)	17, 136, 240, 343, 823, 949
LmnI	GCTCC	5 cut(s)	323, 323, 413, 605, 891
Lsp1109I	GCAGC	3 cut(s)	183, 219, 313
LweI	GCATC	2 cut(s)	825, 916
MaeI	CTAG	1 cut(s)	828
MaeII	ACGT	2 cut(s)	576, 618
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	6 cut(s)	19, 138, 242, 345, 825, 951
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	6 cut(s)	17, 136, 240, 343, 823, 949
MflI	RGATCY	2 cut(s)	823, 949
MhlI	GDGCHC	3 cut(s)	320, 481, 963
MluCI	AATT	7 cut(s)	247, 497, 537, 565, 792, 857, 880
MlyI	GAGTC	5 cut(s)	92, 164, 320, 362, 391
MmeI	TCCRAC	1 cut(s)	583
MroI	TCCGGA	2 cut(s)	320, 885
MroXI	GAANNNNTTC	2 cut(s)	73, 999
MslI	CAYNNNNRTG	1 cut(s)	807
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	7 cut(s)	140, 321, 386, 527, 570, 886, 1004
MspR9I	CCNGG	5 cut(s)	45, 141, 528, 571, 873
MvaI	CCWGG	2 cut(s)	45, 873
MwoI	GCNNNNNNNGC	1 cut(s)	273
NciI	CCSGG	3 cut(s)	141, 528, 571
NdeII	GATC	6 cut(s)	17, 136, 240, 343, 823, 949
NlaIII	CATG	2 cut(s)	238, 638
NmeAIII	GCCGAG	2 cut(s)	254, 272
NspI	RCATGY	1 cut(s)	638
PdmI	GAANNNNTTC	2 cut(s)	73, 999
PfeI	GAWTC	2 cut(s)	122, 769
PfoI	TCCNGGA	1 cut(s)	569
PkrI	GCNGC	3 cut(s)	173, 209, 328
PleI	GAGTC	5 cut(s)	92, 163, 319, 361, 390
PpsI	GAGTC	5 cut(s)	92, 163, 319, 361, 390
Psp124BI	GAGCTC	3 cut(s)	320, 481, 963
Psp6I	CCWGG	2 cut(s)	43, 871
PspGI	CCWGG	2 cut(s)	43, 871
PspPI	GGNCC	2 cut(s)	711, 741
PsuI	RGATCY	2 cut(s)	823, 949
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
RseI	CAYNNNNRTG	1 cut(s)	807
SacI	GAGCTC	3 cut(s)	320, 481, 963
SatI	GCNGC	3 cut(s)	172, 208, 327
Sau3AI	GATC	6 cut(s)	17, 136, 240, 343, 823, 949
Sau96I	GGNCC	2 cut(s)	711, 741
ScaI	AGTACT	1 cut(s)	625
SchI	GAGTC	5 cut(s)	92, 164, 320, 362, 391
ScrFI	CCNGG	5 cut(s)	45, 141, 528, 571, 873
SduI	GDGCHC	3 cut(s)	320, 481, 963
SfaNI	GCATC	2 cut(s)	825, 916
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	2 cut(s)	711, 741
SmiMI	CAYNNNNRTG	1 cut(s)	807
Sse9I	AATT	7 cut(s)	247, 497, 537, 565, 792, 857, 880
SsiI	CCGC	3 cut(s)	109, 210, 453
SspMI	CTAG	1 cut(s)	828
SstI	GAGCTC	3 cut(s)	320, 481, 963
StyD4I	CCNGG	5 cut(s)	43, 139, 526, 569, 871
TaaI	ACNGT	2 cut(s)	131, 372
TaiI	ACGT	2 cut(s)	579, 621
TasI	AATT	7 cut(s)	247, 497, 537, 565, 792, 857, 880
TatI	WGTACW	1 cut(s)	623
TfiI	GAWTC	2 cut(s)	122, 769
TseI	GCWGC	3 cut(s)	171, 207, 326
TspDTI	ATGAA	4 cut(s)	260, 538, 831, 1026
TspGWI	ACGGA	1 cut(s)	733
VpaK11BI	GGWCC	2 cut(s)	711, 741
XapI	RAATTY	3 cut(s)	792, 857, 880
XceI	RCATGY	1 cut(s)	638
XmiI	GTMKAC	2 cut(s)	5, 647
XmnI	GAANNNNTTC	2 cut(s)	73, 999
XspI	CTAG	1 cut(s)	828
ZrmI	AGTACT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.