Methyltransferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G51070 AT3G51070 |
| fragaria_vesca | FvH4_1g12411 |
| malus_domestica | MD02G1136800.v1.1 MD15G1250600.v1.1 |
| prunus_persica | Prupe.7G163700_v2.0.a1 |
| pyrus_communis | pycom15g22090 |
| rosa_chinensis | RchiOBHm_Chr2g0100281 |
| rosa_laevigata | RLG00000016952 |
| rosa_multiflora | Rmu_sc0002547.1_g000021 Rmu_sc0002547.1_g000022 |
| rosa_roxburghii | Rroxscaffold_2G00142420 |
| rosa_rugosa | Rorug02G0087100 Rorug02G0087200 |
| rosa_samantha | Rh2AG136100 Rh2BG139700 Rh2CG141400 Rh2DG141600 |
| rosa_wichuraiana | Rw2G010650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1463 |
| Acc16I | TGCGCA | 1 cut(s) | 2838 |
| AccB1I | GGYRCC | 1 cut(s) | 1441 |
| AccBSI | CCGCTC | 1 cut(s) | 2483 |
| AccII | CGCG | 2 cut(s) | 22, 2736 |
| AccIII | TCCGGA | 2 cut(s) | 274, 353 |
| AclWI | GGATC | 4 cut(s) | 408, 1233, 1659, 2499 |
| AcoI | YGGCCR | 3 cut(s) | 550, 1472, 2855 |
| AcsI | RAATTY | 5 cut(s) | 522, 616, 844, 2499, 2767 |
| AcuI | CTGAAG | 2 cut(s) | 405, 669 |
| AcyI | GRCGYC | 1 cut(s) | 1460 |
| AfaI | GTAC | 6 cut(s) | 1020, 1292, 1509, 1647, 1834, 2205 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 1418, 1438, 1549, 1589, 1858, 1988, 2487, 2787, 2788 |
| AflIII | ACRYGT | 1 cut(s) | 2383 |
| AgsI | TTSAA | 9 cut(s) | 51, 144, 254, 473, 833, 872, 1637, 1936, 2776 |
| AjiI | CACGTC | 1 cut(s) | 183 |
| AjnI | CCWGG | 5 cut(s) | 1431, 1582, 1951, 2195, 2273 |
| Alw21I | GWGCWC | 1 cut(s) | 1885 |
| Alw26I | GTCTC | 6 cut(s) | 848, 950, 1139, 1479, 1564, 2264 |
| Alw44I | GTGCAC | 1 cut(s) | 1881 |
| AlwI | GGATC | 4 cut(s) | 408, 1233, 1659, 2499 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1843 |
| Ama87I | CYCGRG | 3 cut(s) | 262, 1171, 1674 |
| Aor13HI | TCCGGA | 2 cut(s) | 274, 353 |
| AoxI | GGCC | 8 cut(s) | 550, 1131, 1472, 1949, 2264, 2276, 2711, 2855 |
| ApaLI | GTGCAC | 1 cut(s) | 1881 |
| ApoI | RAATTY | 5 cut(s) | 522, 616, 844, 2499, 2767 |
| AseI | ATTAAT | 1 cut(s) | 234 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 654 |
| AspLEI | GCGC | 6 cut(s) | 24, 1254, 1613, 1671, 2750, 2839 |
| AspS9I | GGNCC | 3 cut(s) | 1421, 1593, 2056 |
| AsuC2I | CCSGG | 3 cut(s) | 263, 264, 2715 |
| AsuHPI | GGTGA | 9 cut(s) | 278, 308, 1073, 1118, 1532, 1543, 1577, 2518, 2530 |
| AvaI | CYCGRG | 3 cut(s) | 262, 1171, 1674 |
| AvaII | GGWCC | 3 cut(s) | 1421, 1593, 2056 |
| BaeGI | GKGCMC | 1 cut(s) | 1885 |
| BanI | GGYRCC | 1 cut(s) | 1441 |
| BbsI | GAAGAC | 2 cut(s) | 39, 261 |
| Bbv12I | GWGCWC | 1 cut(s) | 1885 |
| BbvCI | CCTCAGC | 1 cut(s) | 1086 |
| BccI | CCATC | 3 cut(s) | 67, 2111, 2555 |
| BceAI | ACGGC | 2 cut(s) | 1856, 2329 |
| BciT130I | CCWGG | 5 cut(s) | 1433, 1584, 1953, 2197, 2275 |
| BclI | TGATCA | 2 cut(s) | 568, 1108 |
| BcnI | CCSGG | 3 cut(s) | 263, 264, 2715 |
| BcoDI | GTCTC | 6 cut(s) | 848, 950, 1139, 1479, 1564, 2264 |
| BfaI | CTAG | 3 cut(s) | 27, 129, 1796 |
| BfmI | CTRYAG | 2 cut(s) | 606, 2532 |
| BfoI | RGCGCY | 1 cut(s) | 1614 |
| Bme1390I | CCNGG | 8 cut(s) | 263, 264, 1433, 1584, 1953, 2197, 2275, 2715 |
| Bme18I | GGWCC | 3 cut(s) | 1421, 1593, 2056 |
| BmeT110I | CYCGRG | 3 cut(s) | 262, 1171, 1674 |
| BmgBI | CACGTC | 1 cut(s) | 183 |
| BmgT120I | GGNCC | 3 cut(s) | 1421, 1593, 2056 |
| BmiI | GGNNCC | 8 cut(s) | 1422, 1423, 1437, 1443, 1594, 1595, 2057, 2317 |
| BmrFI | CCNGG | 8 cut(s) | 263, 264, 1433, 1584, 1953, 2197, 2275, 2715 |
| BmrI | ACTGGG | 3 cut(s) | 1558, 1591, 2797 |
| BmsI | GCATC | 6 cut(s) | 271, 1290, 1312, 1402, 1858, 2817 |
| BmuI | ACTGGG | 3 cut(s) | 1558, 1591, 2797 |
| BpiI | GAAGAC | 2 cut(s) | 39, 261 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 577, 609, 2242, 2274 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1086 |
| BpuEI | CTTGAG | 3 cut(s) | 579, 1203, 1764 |
| BpuMI | CCSGG | 3 cut(s) | 263, 264, 2715 |
| BsaBI | GATNNNNATC | 1 cut(s) | 996 |
| BsaHI | GRCGYC | 1 cut(s) | 1460 |
| BsaI | GGTCTC | 3 cut(s) | 848, 1564, 2264 |
| BsaJI | CCNNGG | 4 cut(s) | 243, 262, 1898, 1952 |
| BsaWI | WCCGGW | 7 cut(s) | 274, 353, 620, 670, 1438, 1562, 1648 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2756, 2786 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 1418, 1438, 1549, 1589, 1858, 1988, 2487, 2787, 2788 |
| Bse118I | RCCGGY | 1 cut(s) | 1139 |
| Bse1I | ACTGG | 5 cut(s) | 1553, 1597, 2309, 2381, 2792 |
| Bse3DI | GCAATG | 2 cut(s) | 211, 1517 |
| Bse8I | GATNNNNATC | 1 cut(s) | 996 |
| BseAI | TCCGGA | 2 cut(s) | 274, 353 |
| BseBI | CCWGG | 5 cut(s) | 1433, 1584, 1953, 2197, 2275 |
| BseDI | CCNNGG | 4 cut(s) | 243, 262, 1898, 1952 |
| BseGI | GGATG | 4 cut(s) | 120, 283, 498, 2832 |
| BseJI | GATNNNNATC | 1 cut(s) | 996 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 1418, 1438, 1549, 1589, 1858, 1988, 2487, 2787, 2788 |
| BseMI | GCAATG | 2 cut(s) | 211, 1517 |
| BseMII | CTCAG | 7 cut(s) | 210, 429, 1100, 1850, 2238, 2259, 2500 |
| BseNI | ACTGG | 5 cut(s) | 1553, 1597, 2309, 2381, 2792 |
| BseRI | GAGGAG | 3 cut(s) | 1142, 1607, 2286 |
| BseSI | GKGCMC | 1 cut(s) | 1885 |
| BseYI | CCCAGC | 1 cut(s) | 1853 |
| BsgI | GTGCAG | 2 cut(s) | 2689, 2768 |
| Bsh1236I | CGCG | 2 cut(s) | 22, 2736 |
| Bsh1285I | CGRYCG | 3 cut(s) | 44, 69, 1467 |
| BshFI | GGCC | 8 cut(s) | 552, 1133, 1474, 1951, 2266, 2278, 2713, 2857 |
| BshNI | GGYRCC | 1 cut(s) | 1441 |
| BsiEI | CGRYCG | 3 cut(s) | 44, 69, 1467 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1885 |
| BsiHKCI | CYCGRG | 3 cut(s) | 262, 1171, 1674 |
| BslFI | GGGAC | 7 cut(s) | 1178, 1228, 1407, 1606, 2069, 2269, 2764 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 1418, 1438, 1549, 1589, 1858, 1988, 2487, 2787, 2788 |
| BsmAI | GTCTC | 6 cut(s) | 848, 950, 1139, 1479, 1564, 2264 |
| BsmBI | CGTCTC | 2 cut(s) | 950, 1139 |
| BsmFI | GGGAC | 7 cut(s) | 1178, 1228, 1407, 1606, 2069, 2269, 2764 |
| BsmI | GAATGC | 2 cut(s) | 682, 1923 |
| BsnI | GGCC | 8 cut(s) | 552, 1133, 1474, 1951, 2266, 2278, 2713, 2857 |
| Bso31I | GGTCTC | 3 cut(s) | 848, 1564, 2264 |
| BsoBI | CYCGRG | 3 cut(s) | 262, 1171, 1674 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1885 |
| Bsp13I | TCCGGA | 2 cut(s) | 274, 353 |
| Bsp19I | CCATGG | 1 cut(s) | 1898 |
| BspANI | GGCC | 8 cut(s) | 552, 1133, 1474, 1951, 2266, 2278, 2713, 2857 |
| BspCNI | CTCAG | 7 cut(s) | 211, 430, 1099, 1849, 2239, 2260, 2499 |
| BspEI | TCCGGA | 2 cut(s) | 274, 353 |
| BspFNI | CGCG | 2 cut(s) | 22, 2736 |
| BspLI | GGNNCC | 8 cut(s) | 1422, 1423, 1437, 1443, 1594, 1595, 2057, 2317 |
| BspMAI | CTGCAG | 1 cut(s) | 2536 |
| BspPI | GGATC | 4 cut(s) | 408, 1233, 1659, 2499 |
| BspT107I | GGYRCC | 1 cut(s) | 1441 |
| BspTNI | GGTCTC | 3 cut(s) | 848, 1564, 2264 |
| BsrBI | CCGCTC | 1 cut(s) | 2483 |
| BsrDI | GCAATG | 2 cut(s) | 211, 1517 |
| BsrFI | RCCGGY | 1 cut(s) | 1139 |
| BsrI | ACTGG | 5 cut(s) | 1553, 1597, 2309, 2381, 2792 |
| BssAI | RCCGGY | 1 cut(s) | 1139 |
| BssECI | CCNNGG | 4 cut(s) | 243, 262, 1898, 1952 |
| BssNI | GRCGYC | 1 cut(s) | 1460 |
| BssT1I | CCWWGG | 2 cut(s) | 243, 1898 |
| Bst2UI | CCWGG | 5 cut(s) | 1433, 1584, 1953, 2197, 2275 |
| Bst4CI | ACNGT | 5 cut(s) | 70, 1106, 1880, 1940, 2399 |
| Bst6I | CTCTTC | 1 cut(s) | 483 |
| BstACI | GRCGYC | 1 cut(s) | 1460 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 215, 1519 |
| BstDEI | CTNAG | 8 cut(s) | 219, 438, 1086, 1836, 2247, 2268, 2486, 2831 |
| BstDSI | CCRYGG | 1 cut(s) | 1898 |
| BstEII | GGTNACC | 1 cut(s) | 1538 |
| BstF5I | GGATG | 4 cut(s) | 120, 283, 498, 2832 |
| BstFNI | CGCG | 2 cut(s) | 22, 2736 |
| BstH2I | RGCGCY | 1 cut(s) | 1614 |
| BstHHI | GCGC | 6 cut(s) | 24, 1254, 1613, 1671, 2750, 2839 |
| BstMAI | GTCTC | 6 cut(s) | 848, 950, 1139, 1479, 1564, 2264 |
| BstMCI | CGRYCG | 3 cut(s) | 44, 69, 1467 |
| BstNI | CCWGG | 5 cut(s) | 1433, 1584, 1953, 2197, 2275 |
| BstNSI | RCATGY | 1 cut(s) | 2220 |
| BstPI | GGTNACC | 1 cut(s) | 1538 |
| BstSCI | CCNGG | 8 cut(s) | 261, 262, 1431, 1582, 1951, 2195, 2273, 2713 |
| BstSFI | CTRYAG | 2 cut(s) | 606, 2532 |
| BstSLI | GKGCMC | 1 cut(s) | 1885 |
| BstUI | CGCG | 2 cut(s) | 22, 2736 |
| BstV2I | GAAGAC | 2 cut(s) | 39, 261 |
| BstX2I | RGATCY | 2 cut(s) | 1651, 2491 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 560, 1432 |
| BstYI | RGATCY | 2 cut(s) | 1651, 2491 |
| BsuRI | GGCC | 8 cut(s) | 552, 1133, 1474, 1951, 2266, 2278, 2713, 2857 |
| BtgI | CCRYGG | 1 cut(s) | 1898 |
| BtgZI | GCGATG | 1 cut(s) | 2751 |
| BtrI | CACGTC | 1 cut(s) | 183 |
| BtsCI | GGATG | 4 cut(s) | 120, 283, 498, 2832 |
| BtsI | GCAGTG | 1 cut(s) | 565 |
| BtsIMutI | CAGTG | 5 cut(s) | 565, 1876, 2135, 2374, 2785 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1843 |
| CfoI | GCGC | 6 cut(s) | 24, 1254, 1613, 1671, 2750, 2839 |
| Cfr10I | RCCGGY | 1 cut(s) | 1139 |
| Cfr13I | GGNCC | 3 cut(s) | 1421, 1593, 2056 |
| Cfr9I | CCCGGG | 1 cut(s) | 262 |
| CseI | GACGC | 3 cut(s) | 329, 1156, 1649 |
| Csp6I | GTAC | 6 cut(s) | 1019, 1291, 1508, 1646, 1833, 2204 |
| CviQI | GTAC | 6 cut(s) | 1019, 1291, 1508, 1646, 1833, 2204 |
| DdeI | CTNAG | 8 cut(s) | 219, 438, 1086, 1836, 2247, 2268, 2486, 2831 |
| EaeI | YGGCCR | 3 cut(s) | 550, 1472, 2855 |
| Eam1104I | CTCTTC | 1 cut(s) | 483 |
| EarI | CTCTTC | 1 cut(s) | 483 |
| Eco130I | CCWWGG | 2 cut(s) | 243, 1898 |
| Eco147I | AGGCCT | 1 cut(s) | 1951 |
| Eco31I | GGTCTC | 3 cut(s) | 848, 1564, 2264 |
| Eco47I | GGWCC | 3 cut(s) | 1421, 1593, 2056 |
| Eco57I | CTGAAG | 2 cut(s) | 405, 669 |
| Eco88I | CYCGRG | 3 cut(s) | 262, 1171, 1674 |
| Eco91I | GGTNACC | 1 cut(s) | 1538 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1421, 1593, 2056 |
| EcoO65I | GGTNACC | 1 cut(s) | 1538 |
| EcoRII | CCWGG | 5 cut(s) | 1431, 1582, 1951, 2195, 2273 |
| EcoT14I | CCWWGG | 2 cut(s) | 243, 1898 |
| ErhI | CCWWGG | 2 cut(s) | 243, 1898 |
| Esp3I | CGTCTC | 2 cut(s) | 950, 1139 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2814, 2846 |
| FaqI | GGGAC | 7 cut(s) | 1178, 1228, 1407, 1606, 2069, 2269, 2764 |
| FauI | CCCGC | 2 cut(s) | 1154, 1819 |
| FbaI | TGATCA | 2 cut(s) | 568, 1108 |
| FokI | GGATG | 4 cut(s) | 127, 290, 485, 2839 |
| FspBI | CTAG | 3 cut(s) | 27, 129, 1796 |
| FspI | TGCGCA | 1 cut(s) | 2838 |
| GlaI | GCGC | 6 cut(s) | 23, 1253, 1612, 1670, 2749, 2838 |
| GsaI | CCCAGC | 1 cut(s) | 1857 |
| HaeII | RGCGCY | 1 cut(s) | 1614 |
| HaeIII | GGCC | 8 cut(s) | 552, 1133, 1474, 1951, 2266, 2278, 2713, 2857 |
| HgaI | GACGC | 3 cut(s) | 329, 1156, 1649 |
| HhaI | GCGC | 6 cut(s) | 24, 1254, 1613, 1671, 2750, 2839 |
| Hin1I | GRCGYC | 1 cut(s) | 1460 |
| Hin6I | GCGC | 6 cut(s) | 22, 1252, 1611, 1669, 2748, 2837 |
| HinP1I | GCGC | 6 cut(s) | 22, 1252, 1611, 1669, 2748, 2837 |
| HincII | GTYRAC | 1 cut(s) | 2239 |
| HindII | GTYRAC | 1 cut(s) | 2239 |
| HindIII | AAGCTT | 1 cut(s) | 651 |
| HphI | GGTGA | 9 cut(s) | 278, 308, 1073, 1118, 1532, 1543, 1577, 2518, 2530 |
| Hpy166II | GTNNAC | 5 cut(s) | 1876, 1883, 2239, 2723, 2797 |
| Hpy8I | GTNNAC | 5 cut(s) | 1876, 1883, 2239, 2723, 2797 |
| Hpy99I | CGWCG | 1 cut(s) | 1465 |
| HpyAV | CCTTC | 8 cut(s) | 487, 1177, 1237, 1528, 1643, 1858, 1904, 2816 |
| HpyCH4III | ACNGT | 5 cut(s) | 70, 1106, 1880, 1940, 2399 |
| HpyCH4IV | ACGT | 6 cut(s) | 182, 1460, 1689, 1885, 2383, 2560 |
| HpyF3I | CTNAG | 8 cut(s) | 219, 438, 1086, 1836, 2247, 2268, 2486, 2831 |
| HpySE526I | ACGT | 6 cut(s) | 182, 1460, 1689, 1885, 2383, 2560 |
| Hsp92I | GRCGYC | 1 cut(s) | 1460 |
| HspAI | GCGC | 6 cut(s) | 22, 1252, 1611, 1669, 2748, 2837 |
| KflI | GGGWCCC | 2 cut(s) | 1421, 1593 |
| Kpn2I | TCCGGA | 2 cut(s) | 274, 353 |
| KroI | GCCGGC | 1 cut(s) | 1139 |
| KroNI | GCCGGC | 1 cut(s) | 1141 |
| Ksp22I | TGATCA | 2 cut(s) | 568, 1108 |
| LmnI | GCTCC | 4 cut(s) | 1155, 2299, 2321, 2683 |
| LweI | GCATC | 6 cut(s) | 271, 1290, 1312, 1402, 1858, 2817 |
| MaeI | CTAG | 3 cut(s) | 27, 129, 1796 |
| MaeII | ACGT | 6 cut(s) | 182, 1460, 1689, 1885, 2383, 2560 |
| MaeIII | GTNAC | 6 cut(s) | 32, 1100, 1451, 1538, 1958, 2399 |
| MbiI | CCGCTC | 1 cut(s) | 2483 |
| MfeI | CAATTG | 3 cut(s) | 2422, 2751, 2848 |
| MflI | RGATCY | 2 cut(s) | 1651, 2491 |
| MhlI | GDGCHC | 1 cut(s) | 1885 |
| MlyI | GAGTC | 4 cut(s) | 1196, 1210, 1717, 2251 |
| MmeI | TCCRAC | 2 cut(s) | 115, 1212 |
| MreI | CGCCGGCG | 1 cut(s) | 1139 |
| MroI | TCCGGA | 2 cut(s) | 274, 353 |
| MroNI | GCCGGC | 1 cut(s) | 1139 |
| MroXI | GAANNNNTTC | 1 cut(s) | 654 |
| MseI | TTAA | 8 cut(s) | 234, 420, 1554, 1946, 2309, 2391, 2496, 2881 |
| MslI | CAYNNNNRTG | 2 cut(s) | 642, 2450 |
| MspA1I | CMGCKG | 2 cut(s) | 383, 549 |
| MspR9I | CCNGG | 8 cut(s) | 263, 264, 1433, 1584, 1953, 2197, 2275, 2715 |
| MunI | CAATTG | 3 cut(s) | 2422, 2751, 2848 |
| Mva1269I | GAATGC | 2 cut(s) | 682, 1923 |
| MvaI | CCWGG | 5 cut(s) | 1433, 1584, 1953, 2197, 2275 |
| MvnI | CGCG | 2 cut(s) | 22, 2736 |
| NaeI | GCCGGC | 1 cut(s) | 1141 |
| NciI | CCSGG | 3 cut(s) | 263, 264, 2715 |
| NcoI | CCATGG | 1 cut(s) | 1898 |
| NgoMIV | GCCGGC | 1 cut(s) | 1139 |
| NlaIV | GGNNCC | 8 cut(s) | 1422, 1423, 1437, 1443, 1594, 1595, 2057, 2317 |
| NmuCI | GTSAC | 1 cut(s) | 1538 |
| NsbI | TGCGCA | 1 cut(s) | 2838 |
| NspI | RCATGY | 1 cut(s) | 2220 |
| PceI | AGGCCT | 1 cut(s) | 1951 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1178, 1205 |
| PctI | GAATGC | 2 cut(s) | 682, 1923 |
| PdiI | GCCGGC | 1 cut(s) | 1141 |
| PdmI | GAANNNNTTC | 1 cut(s) | 654 |
| PfeI | GAWTC | 8 cut(s) | 997, 1076, 1177, 1196, 2125, 2528, 2594, 2741 |
| PflFI | GACNNNGTC | 3 cut(s) | 2041, 2060, 2627 |
| Ple19I | CGATCG | 1 cut(s) | 1467 |
| PleI | GAGTC | 4 cut(s) | 1195, 1210, 1716, 2251 |
| PpsI | GAGTC | 4 cut(s) | 1195, 1210, 1716, 2251 |
| PpuMI | RGGWCCY | 3 cut(s) | 1421, 1593, 2056 |
| PshBI | ATTAAT | 1 cut(s) | 234 |
| Psp5II | RGGWCCY | 3 cut(s) | 1421, 1593, 2056 |
| Psp6I | CCWGG | 5 cut(s) | 1431, 1582, 1951, 2195, 2273 |
| PspEI | GGTNACC | 1 cut(s) | 1538 |
| PspFI | CCCAGC | 1 cut(s) | 1853 |
| PspGI | CCWGG | 5 cut(s) | 1431, 1582, 1951, 2195, 2273 |
| PspN4I | GGNNCC | 8 cut(s) | 1422, 1423, 1437, 1443, 1594, 1595, 2057, 2317 |
| PspPI | GGNCC | 3 cut(s) | 1421, 1593, 2056 |
| PspPPI | RGGWCCY | 3 cut(s) | 1421, 1593, 2056 |
| PstI | CTGCAG | 1 cut(s) | 2536 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1843 |
| PsuI | RGATCY | 2 cut(s) | 1651, 2491 |
| PsyI | GACNNNGTC | 3 cut(s) | 2041, 2060, 2627 |
| PvuI | CGATCG | 1 cut(s) | 1467 |
| RsaI | GTAC | 6 cut(s) | 1020, 1292, 1509, 1647, 1834, 2205 |
| RsaNI | GTAC | 6 cut(s) | 1019, 1291, 1508, 1646, 1833, 2204 |
| RseI | CAYNNNNRTG | 2 cut(s) | 642, 2450 |
| SaqAI | TTAA | 8 cut(s) | 234, 420, 1554, 1946, 2309, 2391, 2496, 2881 |
| Sau96I | GGNCC | 3 cut(s) | 1421, 1593, 2056 |
| SchI | GAGTC | 4 cut(s) | 1196, 1210, 1717, 2251 |
| ScrFI | CCNGG | 8 cut(s) | 263, 264, 1433, 1584, 1953, 2197, 2275, 2715 |
| SduI | GDGCHC | 1 cut(s) | 1885 |
| SfaNI | GCATC | 6 cut(s) | 271, 1290, 1312, 1402, 1858, 2817 |
| SfcI | CTRYAG | 2 cut(s) | 606, 2532 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1139 |
| SinI | GGWCC | 3 cut(s) | 1421, 1593, 2056 |
| SmaI | CCCGGG | 1 cut(s) | 264 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 642, 2450 |
| SmlI | CTYRAG | 3 cut(s) | 594, 1218, 1779 |
| SmoI | CTYRAG | 3 cut(s) | 594, 1218, 1779 |
| SseBI | AGGCCT | 1 cut(s) | 1951 |
| SspI | AATATT | 2 cut(s) | 232, 868 |
| SspMI | CTAG | 3 cut(s) | 27, 129, 1796 |
| StuI | AGGCCT | 1 cut(s) | 1951 |
| StyD4I | CCNGG | 8 cut(s) | 261, 262, 1431, 1582, 1951, 2195, 2273, 2713 |
| StyI | CCWWGG | 2 cut(s) | 243, 1898 |
| TaaI | ACNGT | 5 cut(s) | 70, 1106, 1880, 1940, 2399 |
| TaiI | ACGT | 6 cut(s) | 185, 1463, 1692, 1888, 2386, 2563 |
| TaqI | TCGA | 9 cut(s) | 65, 1199, 1376, 1389, 1396, 1463, 1467, 2123, 2284 |
| TatI | WGTACW | 1 cut(s) | 1018 |
| TauI | GCSGC | 9 cut(s) | 383, 552, 712, 1477, 2099, 2195, 2480, 2483, 2857 |
| TfiI | GAWTC | 8 cut(s) | 997, 1076, 1177, 1196, 2125, 2528, 2594, 2741 |
| Tru1I | TTAA | 8 cut(s) | 234, 420, 1554, 1946, 2309, 2391, 2496, 2881 |
| Tru9I | TTAA | 8 cut(s) | 234, 420, 1554, 1946, 2309, 2391, 2496, 2881 |
| TscAI | CASTG | 5 cut(s) | 565, 1883, 2135, 2381, 2792 |
| TseFI | GTSAC | 1 cut(s) | 1538 |
| Tsp45I | GTSAC | 1 cut(s) | 1538 |
| TspMI | CCCGGG | 1 cut(s) | 262 |
| TspRI | CASTG | 5 cut(s) | 565, 1883, 2135, 2381, 2792 |
| Tth111I | GACNNNGTC | 3 cut(s) | 2041, 2060, 2627 |
| VneI | GTGCAC | 1 cut(s) | 1881 |
| VpaK11BI | GGWCC | 3 cut(s) | 1421, 1593, 2056 |
| VspI | ATTAAT | 1 cut(s) | 234 |
| XapI | RAATTY | 5 cut(s) | 522, 616, 844, 2499, 2767 |
| XceI | RCATGY | 1 cut(s) | 2220 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1604 |
| XmaI | CCCGGG | 1 cut(s) | 262 |
| XmnI | GAANNNNTTC | 1 cut(s) | 654 |
| XspI | CTAG | 3 cut(s) | 27, 129, 1796 |
| ZraI | GACGTC | 1 cut(s) | 1461 |