Rorug02G0087100

Methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011678
Physical Location & Seq
Forward (+)
6914112 .. 6915537
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0087100.1

Sequence Viewer

Length: 510 bp
ATGGGAAGAAAACCCTGCTGTAACAAACAAGGGGTAAAAAAGGAAGCATGGTCTGTTGAGGAAGATGAAGTCCTCGTTCACTACGTAGGAACACATGGACAAGGCAAATGGAGAGACATTCCTCAGAGAGCTGGGTTAAACCGGTGCGGAAAGAGCTGCAGACTGCGATGGCTGAATTATCTTAGGCCGGATATCAAGAGAGGAAACATTTCTGCCGATGAAGATGAACTCATTTTTAGACTACACAATCTTCTTGGAAACAGGTGGACCCTTGTAGCCGGAAGATTGCCTGGACGAACAGACAATGAAATAAAGAATCATTGGAATACTAATTTGAGCAAGAGGTTATTAGAGCAAGCTCCACACAATGACATTGAGGCTCATCATCATCATCATCATCATCAGCATGATGAATATCCTAGCAAGAAATTAAAAGAAGTTGAGGATATAATTTACACGGAAGATCAAAACAAGGCCATGCCATTCGAACAAAAGCATTGGAGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29

Protein Analysis

169

Amino Acids

19.94

Weight (kDa)

8.66

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 8.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 3.6e-16 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011678)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51070 AT3G51070
fragaria_vesca FvH4_1g12411
malus_domestica MD02G1136800.v1.1 MD15G1250600.v1.1
prunus_persica Prupe.7G163700_v2.0.a1
pyrus_communis pycom15g22090
rosa_chinensis RchiOBHm_Chr2g0100281
rosa_laevigata RLG00000016952
rosa_multiflora Rmu_sc0002547.1_g000021 Rmu_sc0002547.1_g000022
rosa_roxburghii Rroxscaffold_2G00142420
rosa_rugosa Rorug02G0087100 Rorug02G0087200
rosa_samantha Rh2AG136100 Rh2BG139700 Rh2CG141400 Rh2DG141600
rosa_wichuraiana Rw2G010650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 147
AgeI ACCGGT 1 cut(s) 141
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 4 cut(s) 131, 156, 359, 504
AluI AGCT 4 cut(s) 131, 156, 359, 504
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 1 cut(s) 108
AoxI GGCC 2 cut(s) 185, 474
ApeKI GCWGC 1 cut(s) 156
AsiGI ACCGGT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 267
AsuII TTCGAA 1 cut(s) 486
AvaII GGWCC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 506
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 486
BsaAI YACGTR 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 414
BsaWI WCCGGW 1 cut(s) 141
Bse118I RCCGGY 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 414
BseBI CCWGG 1 cut(s) 291
BseJI GATNNNNATC 1 cut(s) 414
BseMII CTCAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 2 cut(s) 187, 476
BshTI ACCGGT 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 506
BsiSI CCGG 3 cut(s) 142, 188, 279
BsmAI GTCTC 1 cut(s) 108
BsnI GGCC 2 cut(s) 187, 476
Bsp119I TTCGAA 1 cut(s) 486
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 1 cut(s) 463
BspACI CCGC 1 cut(s) 147
BspANI GGCC 2 cut(s) 187, 476
BspCNI CTCAG 1 cut(s) 136
BspHI TCATGA 1 cut(s) 506
BspLI GGNNCC 1 cut(s) 269
BspMAI CTGCAG 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 486
BsrFI RCCGGY 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 141
BssMI GATC 1 cut(s) 463
Bst2UI CCWGG 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 486
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 2 cut(s) 123, 182
BstKTI GATC 1 cut(s) 466
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 1 cut(s) 463
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstSNI TACGTA 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 143
BsuRI GGCC 2 cut(s) 187, 476
BtgZI GCGATG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 357
CciI TCATGA 1 cut(s) 506
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 267
CspAI ACCGGT 1 cut(s) 141
CviAII CATG 5 cut(s) 48, 95, 407, 478, 507
CviJI RGCY 9 cut(s) 131, 156, 172, 187, 278, 359, 380, 476, 504
CviKI_1 RGCY 9 cut(s) 131, 156, 172, 187, 278, 359, 380, 476, 504
DdeI CTNAG 2 cut(s) 123, 182
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
Ecl136II GAGCTC 1 cut(s) 504
Eco105I TACGTA 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 506
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 267
Eco53kI GAGCTC 1 cut(s) 504
EcoICRI GAGCTC 1 cut(s) 504
EcoRII CCWGG 1 cut(s) 289
EcoRV GATATC 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 506
FaeI CATG 5 cut(s) 51, 98, 410, 481, 510
FaiI YATR 6 cut(s) 49, 96, 408, 449, 479, 508
FatI CATG 5 cut(s) 47, 94, 406, 477, 506
Fnu4HI GCNGC 1 cut(s) 157
FriOI GRGCYC 1 cut(s) 506
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 420
GluI GCNGC 1 cut(s) 157
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 2 cut(s) 187, 476
HapII CCGG 3 cut(s) 142, 188, 279
Hin1II CATG 5 cut(s) 51, 98, 410, 481, 510
HinfI GANTC 1 cut(s) 316
HpaII CCGG 3 cut(s) 142, 188, 279
Hpy166II GTNNAC 2 cut(s) 79, 267
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 196, 507
Hpy8I GTNNAC 2 cut(s) 79, 267
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 2 cut(s) 123, 182
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 5 cut(s) 51, 98, 410, 481, 510
Kzo9I GATC 1 cut(s) 463
LmnI GCTCC 2 cut(s) 364, 501
LpnPI CCDG 8 cut(s) 28, 117, 155, 201, 247, 276, 292, 303
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 1 cut(s) 420
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 465
MboI GATC 1 cut(s) 463
MboII GAAGA 6 cut(s) 18, 74, 233, 242, 294, 473
MhlI GDGCHC 1 cut(s) 506
MluCI AATT 4 cut(s) 175, 331, 428, 450
MnlI CCTC 7 cut(s) 52, 83, 132, 194, 336, 370, 436
MroXI GAANNNNTTC 1 cut(s) 208
MseI TTAA 2 cut(s) 137, 431
MslI CAYNNNNRTG 1 cut(s) 405
MspI CCGG 3 cut(s) 142, 188, 279
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 153
NdeII GATC 1 cut(s) 463
NlaIII CATG 5 cut(s) 51, 98, 410, 481, 510
NlaIV GGNNCC 1 cut(s) 269
NspV TTCGAA 1 cut(s) 486
PagI TCATGA 1 cut(s) 506
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 316
PinAI ACCGGT 1 cut(s) 141
PkrI GCNGC 1 cut(s) 158
Ppu21I YACGTR 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 506
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 1 cut(s) 267
PstI CTGCAG 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 405
SacI GAGCTC 1 cut(s) 506
SaqAI TTAA 2 cut(s) 137, 431
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 1 cut(s) 463
Sau96I GGNCC 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 506
SetI ASST 7 cut(s) 87, 133, 158, 266, 347, 361, 506
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 486
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 405
SnaBI TACGTA 1 cut(s) 85
Sse9I AATT 4 cut(s) 175, 331, 428, 450
SsiI CCGC 1 cut(s) 147
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 1 cut(s) 506
StyD4I CCNGG 1 cut(s) 289
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 486
TasI AATT 4 cut(s) 175, 331, 428, 450
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 2 cut(s) 137, 431
Tru9I TTAA 2 cut(s) 137, 431
TseI GCWGC 1 cut(s) 156
TspDTI ATGAA 5 cut(s) 81, 234, 240, 321, 426
TspGWI ACGGA 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.