Replication factor C subunit
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g12990 |
| malus_domestica | MD02G1144400.v1.1 MD15G1258100.v1.1 |
| prunus_persica | Prupe.7G157200_v2.0.a1 |
| pyrus_communis | pycom15g22580 |
| rosa_chinensis | RchiOBHm_Chr2g0101071 |
| rosa_laevigata | RLG00000017049 |
| rosa_multiflora | Rmu_sc0007698.1_g000014 |
| rosa_roxburghii | Rroxscaffold_2G00141580 |
| rosa_rugosa | Rorug02G0096900 |
| rosa_samantha | Rh2AG142900 Rh2BG148000 Rh2CG149500 Rh2DG148500 |
| rosa_wichuraiana | Rw2G011260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 338 |
| AccII | CGCG | 1 cut(s) | 1569 |
| AciI | CCGC | 2 cut(s) | 928, 2332 |
| AclWI | GGATC | 2 cut(s) | 1359, 2072 |
| AcoI | YGGCCR | 2 cut(s) | 115, 208 |
| AcsI | RAATTY | 3 cut(s) | 1118, 1370, 2285 |
| AcuI | CTGAAG | 4 cut(s) | 68, 171, 1662, 2183 |
| AdeI | CACNNNGTG | 1 cut(s) | 833 |
| AfaI | GTAC | 3 cut(s) | 1087, 2046, 2142 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 113, 347, 493, 596, 728, 1498 |
| AjnI | CCWGG | 2 cut(s) | 630, 829 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 334, 366 |
| Alw21I | GWGCWC | 4 cut(s) | 796, 1100, 1546, 1560 |
| Alw26I | GTCTC | 2 cut(s) | 80, 498 |
| AlwI | GGATC | 2 cut(s) | 1359, 2072 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 353, 631, 1760, 1954, 2182 |
| Ama87I | CYCGRG | 1 cut(s) | 990 |
| AoxI | GGCC | 3 cut(s) | 115, 208, 627 |
| ApeKI | GCWGC | 5 cut(s) | 164, 248, 1706, 1779, 2060 |
| ApoI | RAATTY | 3 cut(s) | 1118, 1370, 2285 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 707, 739 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1313, 1716 |
| AspLEI | GCGC | 3 cut(s) | 60, 396, 1569 |
| AspS9I | GGNCC | 2 cut(s) | 628, 1394 |
| AsuC2I | CCSGG | 2 cut(s) | 55, 2108 |
| AsuHPI | GGTGA | 9 cut(s) | 291, 330, 606, 611, 743, 845, 1194, 1538, 2076 |
| AvaI | CYCGRG | 1 cut(s) | 990 |
| AvaII | GGWCC | 1 cut(s) | 1394 |
| BalI | TGGCCA | 1 cut(s) | 117 |
| BanII | GRGCYC | 1 cut(s) | 1560 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 511, 543, 549, 581 |
| BauI | CACGAG | 2 cut(s) | 849, 2129 |
| BbsI | GAAGAC | 1 cut(s) | 613 |
| Bbv12I | GWGCWC | 4 cut(s) | 796, 1100, 1546, 1560 |
| BbvI | GCAGC | 5 cut(s) | 151, 235, 1718, 1766, 2047 |
| BccI | CCATC | 8 cut(s) | 82, 619, 676, 946, 1009, 1591, 2028, 2089 |
| BceAI | ACGGC | 2 cut(s) | 223, 706 |
| BciT130I | CCWGG | 2 cut(s) | 632, 831 |
| BclI | TGATCA | 3 cut(s) | 690, 979, 1728 |
| BcnI | CCSGG | 2 cut(s) | 55, 2108 |
| BcoDI | GTCTC | 2 cut(s) | 80, 498 |
| BfaI | CTAG | 6 cut(s) | 800, 1320, 1584, 1682, 2072, 2279 |
| BfmI | CTRYAG | 3 cut(s) | 165, 528, 2061 |
| BfuAI | ACCTGC | 1 cut(s) | 338 |
| BisI | GCNGC | 6 cut(s) | 165, 249, 1707, 1780, 2061, 2332 |
| BlpI | GCTNAGC | 1 cut(s) | 390 |
| BlsI | GCNGC | 6 cut(s) | 166, 250, 1708, 1781, 2062, 2333 |
| Bme1390I | CCNGG | 4 cut(s) | 55, 632, 831, 2108 |
| Bme18I | GGWCC | 1 cut(s) | 1394 |
| BmeT110I | CYCGRG | 1 cut(s) | 990 |
| BmgT120I | GGNCC | 2 cut(s) | 628, 1394 |
| BmiI | GGNNCC | 2 cut(s) | 147, 1527 |
| BmrFI | CCNGG | 4 cut(s) | 55, 632, 831, 2108 |
| BmsI | GCATC | 6 cut(s) | 229, 250, 439, 1300, 1444, 1503 |
| BpiI | GAAGAC | 1 cut(s) | 613 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1206 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 390 |
| BpuEI | CTTGAG | 2 cut(s) | 1331, 1839 |
| BpuMI | CCSGG | 2 cut(s) | 55, 2108 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1290 |
| BsaI | GGTCTC | 1 cut(s) | 498 |
| BsaJI | CCNNGG | 3 cut(s) | 53, 630, 2107 |
| BsaWI | WCCGGW | 1 cut(s) | 1391 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 113, 347, 493, 596, 728, 1498 |
| Bse118I | RCCGGY | 1 cut(s) | 1297 |
| Bse1I | ACTGG | 4 cut(s) | 17, 1539, 2021, 2335 |
| Bse3DI | GCAATG | 1 cut(s) | 2196 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1290 |
| BseBI | CCWGG | 2 cut(s) | 632, 831 |
| BseDI | CCNNGG | 3 cut(s) | 53, 630, 2107 |
| BseGI | GGATG | 7 cut(s) | 668, 1471, 1535, 2039, 2103, 2143, 2200 |
| BseJI | GATNNNNATC | 1 cut(s) | 1290 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 113, 347, 493, 596, 728, 1498 |
| BseMI | GCAATG | 1 cut(s) | 2196 |
| BseMII | CTCAG | 6 cut(s) | 50, 381, 1197, 1767, 1892, 1946 |
| BseNI | ACTGG | 4 cut(s) | 17, 1539, 2021, 2335 |
| BseRI | GAGGAG | 1 cut(s) | 765 |
| BseX3I | CGGCCG | 1 cut(s) | 208 |
| BseXI | GCAGC | 5 cut(s) | 151, 235, 1718, 1766, 2047 |
| BseYI | CCCAGC | 1 cut(s) | 1461 |
| Bsh1236I | CGCG | 1 cut(s) | 1569 |
| Bsh1285I | CGRYCG | 1 cut(s) | 211 |
| BshFI | GGCC | 3 cut(s) | 117, 210, 629 |
| BsiEI | CGRYCG | 1 cut(s) | 211 |
| BsiHKAI | GWGCWC | 4 cut(s) | 796, 1100, 1546, 1560 |
| BsiHKCI | CYCGRG | 1 cut(s) | 990 |
| BsiSI | CCGG | 5 cut(s) | 55, 211, 1298, 1392, 2107 |
| BslFI | GGGAC | 3 cut(s) | 360, 1009, 2225 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 113, 347, 493, 596, 728, 1498 |
| BsmAI | GTCTC | 2 cut(s) | 80, 498 |
| BsmFI | GGGAC | 3 cut(s) | 360, 1009, 2225 |
| BsnI | GGCC | 3 cut(s) | 117, 210, 629 |
| Bso31I | GGTCTC | 1 cut(s) | 498 |
| BsoBI | CYCGRG | 1 cut(s) | 990 |
| Bsp1286I | GDGCHC | 4 cut(s) | 796, 1100, 1546, 1560 |
| Bsp1407I | TGTACA | 1 cut(s) | 2140 |
| Bsp143I | GATC | 8 cut(s) | 129, 521, 551, 690, 979, 1351, 1728, 2077 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 390 |
| BspACI | CCGC | 2 cut(s) | 928, 2332 |
| BspANI | GGCC | 3 cut(s) | 117, 210, 629 |
| BspCNI | CTCAG | 6 cut(s) | 49, 382, 1198, 1766, 1891, 1947 |
| BspFNI | CGCG | 1 cut(s) | 1569 |
| BspHI | TCATGA | 2 cut(s) | 1474, 2301 |
| BspLI | GGNNCC | 2 cut(s) | 147, 1527 |
| BspMAI | CTGCAG | 2 cut(s) | 169, 2065 |
| BspMI | ACCTGC | 1 cut(s) | 338 |
| BspPI | GGATC | 2 cut(s) | 1359, 2072 |
| BspTNI | GGTCTC | 1 cut(s) | 498 |
| BsrDI | GCAATG | 1 cut(s) | 2196 |
| BsrFI | RCCGGY | 1 cut(s) | 1297 |
| BsrGI | TGTACA | 1 cut(s) | 2140 |
| BsrI | ACTGG | 4 cut(s) | 17, 1539, 2021, 2335 |
| BssAI | RCCGGY | 1 cut(s) | 1297 |
| BssECI | CCNNGG | 3 cut(s) | 53, 630, 2107 |
| BssMI | GATC | 8 cut(s) | 129, 521, 551, 690, 979, 1351, 1728, 2077 |
| BssSI | CACGAG | 2 cut(s) | 849, 2129 |
| Bst2BI | CACGAG | 2 cut(s) | 849, 2129 |
| Bst2UI | CCWGG | 2 cut(s) | 632, 831 |
| Bst6I | CTCTTC | 3 cut(s) | 226, 310, 2034 |
| BstAUI | TGTACA | 1 cut(s) | 2140 |
| BstC8I | GCNNGC | 3 cut(s) | 1064, 1459, 2229 |
| BstF5I | GGATG | 7 cut(s) | 668, 1471, 1535, 2039, 2103, 2143, 2200 |
| BstFNI | CGCG | 1 cut(s) | 1569 |
| BstHHI | GCGC | 3 cut(s) | 60, 396, 1569 |
| BstKTI | GATC | 8 cut(s) | 132, 524, 554, 693, 982, 1354, 1731, 2080 |
| BstMAI | GTCTC | 2 cut(s) | 80, 498 |
| BstMBI | GATC | 8 cut(s) | 129, 521, 551, 690, 979, 1351, 1728, 2077 |
| BstMCI | CGRYCG | 1 cut(s) | 211 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 248, 791, 800, 1068, 1458, 1564, 1589, 1883, 1988 |
| BstNI | CCWGG | 2 cut(s) | 632, 831 |
| BstNSI | RCATGY | 1 cut(s) | 2231 |
| BstSCI | CCNGG | 4 cut(s) | 53, 630, 829, 2106 |
| BstSFI | CTRYAG | 3 cut(s) | 165, 528, 2061 |
| BstUI | CGCG | 1 cut(s) | 1569 |
| BstV1I | GCAGC | 5 cut(s) | 151, 235, 1718, 1766, 2047 |
| BstV2I | GAAGAC | 1 cut(s) | 613 |
| BstX2I | RGATCY | 1 cut(s) | 1351 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2034 |
| BstYI | RGATCY | 1 cut(s) | 1351 |
| BstZI | CGGCCG | 1 cut(s) | 208 |
| BsuRI | GGCC | 3 cut(s) | 117, 210, 629 |
| BtgZI | GCGATG | 1 cut(s) | 1467 |
| BtsCI | GGATG | 7 cut(s) | 668, 1471, 1535, 2039, 2103, 2143, 2200 |
| BtsI | GCAGTG | 1 cut(s) | 67 |
| BtsIMutI | CAGTG | 9 cut(s) | 44, 67, 139, 919, 1154, 1546, 1627, 1650, 1815 |
| BveI | ACCTGC | 1 cut(s) | 338 |
| Cac8I | GCNNGC | 3 cut(s) | 1064, 1459, 2229 |
| CaiI | CAGNNNCTG | 5 cut(s) | 353, 631, 1760, 1954, 2182 |
| CciI | TCATGA | 2 cut(s) | 1474, 2301 |
| CfoI | GCGC | 3 cut(s) | 60, 396, 1569 |
| Cfr10I | RCCGGY | 1 cut(s) | 1297 |
| Cfr13I | GGNCC | 2 cut(s) | 628, 1394 |
| CsiI | ACCWGGT | 1 cut(s) | 829 |
| Csp6I | GTAC | 3 cut(s) | 1086, 2045, 2141 |
| CviAII | CATG | 5 cut(s) | 437, 1475, 1969, 2228, 2302 |
| CviQI | GTAC | 3 cut(s) | 1086, 2045, 2141 |
| DpnI | GATC | 8 cut(s) | 131, 523, 553, 692, 981, 1353, 1730, 2079 |
| DpnII | GATC | 8 cut(s) | 129, 521, 551, 690, 979, 1351, 1728, 2077 |
| DraIII | CACNNNGTG | 1 cut(s) | 833 |
| EaeI | YGGCCR | 2 cut(s) | 115, 208 |
| EagI | CGGCCG | 1 cut(s) | 208 |
| Eam1104I | CTCTTC | 3 cut(s) | 226, 310, 2034 |
| EarI | CTCTTC | 3 cut(s) | 226, 310, 2034 |
| Ecl136II | GAGCTC | 1 cut(s) | 1558 |
| EclXI | CGGCCG | 1 cut(s) | 208 |
| Eco24I | GRGCYC | 1 cut(s) | 1560 |
| Eco31I | GGTCTC | 1 cut(s) | 498 |
| Eco47I | GGWCC | 1 cut(s) | 1394 |
| Eco52I | CGGCCG | 1 cut(s) | 208 |
| Eco53kI | GAGCTC | 1 cut(s) | 1558 |
| Eco57I | CTGAAG | 4 cut(s) | 68, 171, 1662, 2183 |
| Eco88I | CYCGRG | 1 cut(s) | 990 |
| EcoICRI | GAGCTC | 1 cut(s) | 1558 |
| EcoO109I | RGGNCCY | 1 cut(s) | 628 |
| EcoRII | CCWGG | 2 cut(s) | 630, 829 |
| EcoT22I | ATGCAT | 1 cut(s) | 1594 |
| EcoT38I | GRGCYC | 1 cut(s) | 1560 |
| FaeI | CATG | 5 cut(s) | 440, 1478, 1972, 2231, 2305 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1326, 1358, 1883, 1915, 2031, 2063 |
| FaqI | GGGAC | 3 cut(s) | 360, 1009, 2225 |
| FatI | CATG | 5 cut(s) | 436, 1474, 1968, 2227, 2301 |
| FauNDI | CATATG | 2 cut(s) | 1252, 1447 |
| FbaI | TGATCA | 3 cut(s) | 690, 979, 1728 |
| Fnu4HI | GCNGC | 6 cut(s) | 165, 249, 1707, 1780, 2061, 2332 |
| FokI | GGATG | 7 cut(s) | 655, 1478, 1522, 2046, 2090, 2130, 2207 |
| FriOI | GRGCYC | 1 cut(s) | 1560 |
| Fsp4HI | GCNGC | 6 cut(s) | 165, 249, 1707, 1780, 2061, 2332 |
| FspBI | CTAG | 6 cut(s) | 800, 1320, 1584, 1682, 2072, 2279 |
| GlaI | GCGC | 3 cut(s) | 59, 395, 1568 |
| GluI | GCNGC | 6 cut(s) | 165, 249, 1707, 1780, 2061, 2332 |
| GsaI | CCCAGC | 1 cut(s) | 1465 |
| HaeIII | GGCC | 3 cut(s) | 117, 210, 629 |
| HapII | CCGG | 5 cut(s) | 55, 211, 1298, 1392, 2107 |
| HhaI | GCGC | 3 cut(s) | 60, 396, 1569 |
| Hin1II | CATG | 5 cut(s) | 440, 1478, 1972, 2231, 2305 |
| Hin6I | GCGC | 3 cut(s) | 58, 394, 1567 |
| HinP1I | GCGC | 3 cut(s) | 58, 394, 1567 |
| HincII | GTYRAC | 1 cut(s) | 1699 |
| HindII | GTYRAC | 1 cut(s) | 1699 |
| HindIII | AAGCTT | 2 cut(s) | 1230, 2123 |
| HinfI | GANTC | 8 cut(s) | 772, 818, 997, 1314, 1495, 1805, 1852, 2247 |
| HpaII | CCGG | 5 cut(s) | 55, 211, 1298, 1392, 2107 |
| HphI | GGTGA | 9 cut(s) | 291, 330, 606, 611, 743, 845, 1194, 1538, 2076 |
| Hpy166II | GTNNAC | 4 cut(s) | 338, 466, 1389, 1699 |
| Hpy8I | GTNNAC | 4 cut(s) | 338, 466, 1389, 1699 |
| HpyAV | CCTTC | 6 cut(s) | 425, 486, 1240, 1603, 1885, 2249 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 248, 791, 800, 1068, 1458, 1564, 1589, 1883, 1988 |
| Hsp92II | CATG | 5 cut(s) | 440, 1478, 1972, 2231, 2305 |
| HspAI | GCGC | 3 cut(s) | 58, 394, 1567 |
| Ksp22I | TGATCA | 3 cut(s) | 690, 979, 1728 |
| Kzo9I | GATC | 8 cut(s) | 129, 521, 551, 690, 979, 1351, 1728, 2077 |
| LmnI | GCTCC | 5 cut(s) | 799, 1095, 1642, 1849, 2258 |
| Lsp1109I | GCAGC | 5 cut(s) | 151, 235, 1718, 1766, 2047 |
| LweI | GCATC | 6 cut(s) | 229, 250, 439, 1300, 1444, 1503 |
| MabI | ACCWGGT | 1 cut(s) | 829 |
| MaeI | CTAG | 6 cut(s) | 800, 1320, 1584, 1682, 2072, 2279 |
| MaeIII | GTNAC | 9 cut(s) | 154, 325, 583, 621, 955, 1017, 1148, 1748, 1849 |
| MalI | GATC | 8 cut(s) | 131, 523, 553, 692, 981, 1353, 1730, 2079 |
| MboI | GATC | 8 cut(s) | 129, 521, 551, 690, 979, 1351, 1728, 2077 |
| MflI | RGATCY | 1 cut(s) | 1351 |
| MhlI | GDGCHC | 4 cut(s) | 796, 1100, 1546, 1560 |
| MlsI | TGGCCA | 1 cut(s) | 117 |
| MluCI | AATT | 8 cut(s) | 459, 1118, 1359, 1370, 1632, 1860, 1996, 2285 |
| MluNI | TGGCCA | 1 cut(s) | 117 |
| MlyI | GAGTC | 4 cut(s) | 766, 991, 1846, 2241 |
| MmeI | TCCRAC | 1 cut(s) | 153 |
| Mox20I | TGGCCA | 1 cut(s) | 117 |
| Mph1103I | ATGCAT | 1 cut(s) | 1594 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1313, 1716 |
| MscI | TGGCCA | 1 cut(s) | 117 |
| MseI | TTAA | 3 cut(s) | 932, 1481, 1764 |
| Msp20I | TGGCCA | 1 cut(s) | 117 |
| MspA1I | CMGCKG | 2 cut(s) | 1400, 1709 |
| MspI | CCGG | 5 cut(s) | 55, 211, 1298, 1392, 2107 |
| MspR9I | CCNGG | 4 cut(s) | 55, 632, 831, 2108 |
| MvaI | CCWGG | 2 cut(s) | 632, 831 |
| MvnI | CGCG | 1 cut(s) | 1569 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 248, 791, 800, 1068, 1458, 1564, 1589, 1883, 1988 |
| NciI | CCSGG | 2 cut(s) | 55, 2108 |
| NdeI | CATATG | 2 cut(s) | 1252, 1447 |
| NdeII | GATC | 8 cut(s) | 129, 521, 551, 690, 979, 1351, 1728, 2077 |
| NlaIII | CATG | 5 cut(s) | 440, 1478, 1972, 2231, 2305 |
| NlaIV | GGNNCC | 2 cut(s) | 147, 1527 |
| NmuCI | GTSAC | 5 cut(s) | 154, 621, 1017, 1148, 1849 |
| NsiI | ATGCAT | 1 cut(s) | 1594 |
| NspI | RCATGY | 1 cut(s) | 2231 |
| PaeI | GCATGC | 1 cut(s) | 2231 |
| PaeR7I | CTCGAG | 1 cut(s) | 990 |
| PagI | TCATGA | 2 cut(s) | 1474, 2301 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1313, 1716 |
| PfeI | GAWTC | 4 cut(s) | 818, 1314, 1495, 1805 |
| PkrI | GCNGC | 6 cut(s) | 166, 250, 1708, 1781, 2062, 2333 |
| PleI | GAGTC | 4 cut(s) | 766, 991, 1846, 2241 |
| PpsI | GAGTC | 4 cut(s) | 766, 991, 1846, 2241 |
| Psp124BI | GAGCTC | 1 cut(s) | 1560 |
| Psp6I | CCWGG | 2 cut(s) | 630, 829 |
| PspFI | CCCAGC | 1 cut(s) | 1461 |
| PspGI | CCWGG | 2 cut(s) | 630, 829 |
| PspN4I | GGNNCC | 2 cut(s) | 147, 1527 |
| PspPI | GGNCC | 2 cut(s) | 628, 1394 |
| PspXI | VCTCGAGB | 1 cut(s) | 990 |
| PstI | CTGCAG | 2 cut(s) | 169, 2065 |
| PstNI | CAGNNNCTG | 5 cut(s) | 353, 631, 1760, 1954, 2182 |
| PsuI | RGATCY | 1 cut(s) | 1351 |
| PvuII | CAGCTG | 2 cut(s) | 1400, 1709 |
| RsaI | GTAC | 3 cut(s) | 1087, 2046, 2142 |
| RsaNI | GTAC | 3 cut(s) | 1086, 2045, 2141 |
| SacI | GAGCTC | 1 cut(s) | 1560 |
| SaqAI | TTAA | 3 cut(s) | 932, 1481, 1764 |
| SatI | GCNGC | 6 cut(s) | 165, 249, 1707, 1780, 2061, 2332 |
| Sau3AI | GATC | 8 cut(s) | 129, 521, 551, 690, 979, 1351, 1728, 2077 |
| Sau96I | GGNCC | 2 cut(s) | 628, 1394 |
| SchI | GAGTC | 4 cut(s) | 766, 991, 1846, 2241 |
| ScrFI | CCNGG | 4 cut(s) | 55, 632, 831, 2108 |
| SduI | GDGCHC | 4 cut(s) | 796, 1100, 1546, 1560 |
| SexAI | ACCWGGT | 1 cut(s) | 829 |
| SfaNI | GCATC | 6 cut(s) | 229, 250, 439, 1300, 1444, 1503 |
| SfcI | CTRYAG | 3 cut(s) | 165, 528, 2061 |
| Sfr274I | CTCGAG | 1 cut(s) | 990 |
| SinI | GGWCC | 1 cut(s) | 1394 |
| SlaI | CTCGAG | 1 cut(s) | 990 |
| SmlI | CTYRAG | 3 cut(s) | 990, 1346, 1854 |
| SmoI | CTYRAG | 3 cut(s) | 990, 1346, 1854 |
| SphI | GCATGC | 1 cut(s) | 2231 |
| Sse9I | AATT | 8 cut(s) | 459, 1118, 1359, 1370, 1632, 1860, 1996, 2285 |
| SsiI | CCGC | 2 cut(s) | 928, 2332 |
| SspMI | CTAG | 6 cut(s) | 800, 1320, 1584, 1682, 2072, 2279 |
| SstI | GAGCTC | 1 cut(s) | 1560 |
| StyD4I | CCNGG | 4 cut(s) | 53, 630, 829, 2106 |
| TaqI | TCGA | 8 cut(s) | 224, 544, 561, 991, 1004, 1189, 1511, 1839 |
| TasI | AATT | 8 cut(s) | 459, 1118, 1359, 1370, 1632, 1860, 1996, 2285 |
| TatI | WGTACW | 1 cut(s) | 2140 |
| TauI | GCSGC | 1 cut(s) | 2334 |
| TfiI | GAWTC | 4 cut(s) | 818, 1314, 1495, 1805 |
| Tru1I | TTAA | 3 cut(s) | 932, 1481, 1764 |
| Tru9I | TTAA | 3 cut(s) | 932, 1481, 1764 |
| TscAI | CASTG | 9 cut(s) | 51, 67, 139, 919, 1161, 1546, 1627, 1657, 1815 |
| TseFI | GTSAC | 5 cut(s) | 154, 621, 1017, 1148, 1849 |
| TseI | GCWGC | 5 cut(s) | 164, 248, 1706, 1779, 2060 |
| Tsp45I | GTSAC | 5 cut(s) | 154, 621, 1017, 1148, 1849 |
| TspRI | CASTG | 9 cut(s) | 51, 67, 139, 919, 1161, 1546, 1627, 1657, 1815 |
| VpaK11BI | GGWCC | 1 cut(s) | 1394 |
| XapI | RAATTY | 3 cut(s) | 1118, 1370, 2285 |
| XceI | RCATGY | 1 cut(s) | 2231 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 494 |
| XhoI | CTCGAG | 1 cut(s) | 990 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1313, 1716 |
| XspI | CTAG | 6 cut(s) | 800, 1320, 1584, 1682, 2072, 2279 |
| Zsp2I | ATGCAT | 1 cut(s) | 1594 |