MD15G1258100.v1.1

Replication factor C subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016238
Physical Location & Seq
Reverse (-)
21942634 .. 21946280
3647 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1258100.v1.1.491

Sequence Viewer

Length: 2490 bp
ATGGAGAATAATTGGTCAAGGCCCAGTAGGAATTCTCTGACGCCGGTGAAGCAAAGGAGGAGTGGATATGAGCCATCTTATGCCGAGACAGACATCCCAGATAGCCCCTGGCACGGCGGAAACAAATGGCCAAGTGGAGAATGGGAGTCTGAAGGGGCAAAACCAGAGTTGTATTTGGGAAGAACGATCAGCCCTTTGAAGCAGAGCAGGAGATCTTCAAGGTTTGAATACGAAGGCCCTACTCCAAGAACTACCTCCGTGGTAAGTCCGGTTCGAAGAAGAACCAGCAGCAAGTCGCCCTACAAGCCCAGAAGAGATGACAGCAATGCTCGAACTTTGCCAATGGCGGGTTCTGATATTCATAGGAACATCAGCCCCTTGGGAAAGTCCGAGCGCAGGAGACACGTTTCACCTTTTCAAACAGACCGAGAAGAGCGCAATATGAACGACGATGGTGATGAGATTGTAGGCTCAAACAGAAACCTGTTACATCAGCGAAGGAACAGCAGAAGATCAGCAGCTGCTCCGCAGCATAGATCACCGAGAGAAACCAACCAGCAGAGGAATTGTTCGATCACGCCTACGAAAGGGGAGAGGACTCCATCCCCGTTATCCAAAAGCATGGCTCATCAGAAGCAAAGGCAAGTGAGCACGCCATCTGTCGGCGAAATTAACGAAATGCTTGCCCATGCAAAGCTTGCTAGAACTTCTCCAAACTCCATGTTGAATAACAAAGCTGCTCCGGTTTACGAAAGCTCGGATTCTATTGCAGCAGGTGATATCTTCTTCTCTAGAGAGTGCGATGTCATGGCATTGCCTCGAAATCACTTACAAAAACCGAAAGTGGTTTCCTCTGCTGCCTCTCAACAGAGAAGTACTACCCGATCAAACGGTAACTTCGATCAGAATGTGAATATCCGCGGACTTTTGTCCCCGTATGGTCTGTCACAGACAACCACCACCACTTCCAGCTCTGCGGTGAGCAGGCAGAGCAGCGGGAAGCTGAGCATGGCTAGCAGCAAGACGAGTGATGCAAGCAGGACGACAACAGCCAGCATGAGGAAGTTCACGGACAATAGGAGGAAGAGCGAAGGTCAGGCGTGGTTTTCGTGTATGAAAAAGAGTTCTTGCAAGAACAAAAAATTATCACCTGAGCAGAGCGCATTCAATGAAGCTGCATTCATCGAGAAAGCGTTCGTGGTGGAAAGTCTCAGGCAGTTATGGGCGGATAAGCATCGGCCTAGTTCGTTGAACGGATTCGCTTGCCACAAACAAGAAGCTCAAGTTCTCAAGCAACTTGCGATTGATAACGTCAGTCCCCATATTTTGTTTACTGGACCAACTGGTTCTGGGAAGAAAGCTCTAACAATGGCGTATCTACGGGAAATATACGGCGACGCGAGCTGGGAAGAACAAAGGCCAATGCAAGTAGTGGTTCCATTGACATCCAGTCTTCACCATGTAGAACTCAATGTACAACTGGAACCAAATGCCAGATATGCCCTAATGGGTTTAGTCAAGGAAATAAACAACGAAATTGCTCATGAAGTCAGCTCTATAAATTCCAAGGCAAATCATAGAGGTCAAAATTCTCTCAACAAACCCACAAATCCCTTCCAAACACTTTTGACCTATTTCTCTCAAAACTCTAACATGTTTTTCCTTTTCGTTCCAGTGATGGTTTTGTACGGTGTTGACAAAGCATCAGCGCACATTCAGCATTTGATCAAATGGATCATGGACTGTCACTCGGAATCGTGGAAGCTCATACTCTGTTGCGAAAATGACACCGGCATCATTGAATCGGTGAAAAACCGGTGCATGGTCATCAAGGTTGATGCTCCTGCGACTCATGAAATTATGGAAGTTCTTATTCAGATAGCCAGCAAGGAGGACTTTGACCTACCTATGAGCTTTGCTAGTAAGATTGCAAATAAATCAAAGCAGAATCTGAGAGAAGCAATCATGGGTCTTGAAGTATGCAAAGCACACAACTATCCTTTTGAAGATGAACAACCAATTCCGCTTGGATGGGAAGAGGTGCTGCTTGAACTCGCTTCAGAAATCCTAGCCGATCCTTCACCGAAGAGATTATTTTTCATCCGGGGAAAGTTTCAAAAGCTTCTCATAGATTTTGTCCATCCGAAGCTGATTCTACTGAAGCTCGTGGAACTGTTCCTAAAGGGAGTAGCATCTAGTTCTAGGAGGGAACTCTATTACTGGCATGCTTACTATGTAAGTTCTCTCCCTAATTTCTTCTTTCGGCTCTCAGAGATGGATGATGAACTGACTAAAATCTTGTCCTCGCAGGAGAAAAGACTCCCCGAAGGGGCGAGTGCGTTACTGAAACTAGAAGGTAACATATGCAAACCACTAAAATTCTTCATCCAATTATATAAGGATTCAATAATTTGGCACAAATCCACTTCTGTAGTAAGCTTACAGGTTAATCATGCACCTTTTATGCAGAATTTGTGGCCAAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 map03030 map03420 map03430
Pfam Domains
Protein Families
DNA_pol3_delta2 NmrA

Protein Analysis

830

Amino Acids

93.66

Weight (kDa)

9.5

Isoelectric Point (pI)

63.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RCF1-5-like_lid PF21960 623 - 662 1.2e-07 RCF1/5-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016238)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12990
malus_domestica MD02G1144400.v1.1 MD15G1258100.v1.1
prunus_persica Prupe.7G157200_v2.0.a1
pyrus_communis pycom15g22580
rosa_chinensis RchiOBHm_Chr2g0101071
rosa_laevigata RLG00000017049
rosa_multiflora Rmu_sc0007698.1_g000014
rosa_roxburghii Rroxscaffold_2G00141580
rosa_rugosa Rorug02G0096900
rosa_samantha Rh2AG142900 Rh2BG148000 Rh2CG149500 Rh2DG148500
rosa_wichuraiana Rw2G011260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 764
Acc36I ACCTGC 1 cut(s) 764
AccII CGCG 2 cut(s) 921, 1400
AciI CCGC 9 cut(s) 117, 347, 527, 919, 921, 977, 996, 1226, 2024
AclWI GGATC 2 cut(s) 1742, 2069
AcoI YGGCCR 2 cut(s) 128, 2477
AcsI RAATTY 5 cut(s) 31, 1561, 1588, 2378, 2470
AcuI CTGAAG 3 cut(s) 171, 2043, 2180
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 3 cut(s) 877, 1476, 1688
AfiI CCNNNNNNNGG 8 cut(s) 113, 347, 396, 587, 662, 1059, 1822, 2329
AflIII ACRYGT 2 cut(s) 403, 1653
AgeI ACCGGT 1 cut(s) 1815
AhdI GACNNNNNGTC 1 cut(s) 1449
AjnI CCWGG 1 cut(s) 107
AjuI GAANNNNNNNTTGG 2 cut(s) 334, 366
Alw21I GWGCWC 1 cut(s) 653
Alw26I GTCTC 3 cut(s) 80, 394, 1214
AlwI GGATC 2 cut(s) 1742, 2069
AlwNI CAGNNNCTG 2 cut(s) 521, 1951
AoxI GGCC 6 cut(s) 20, 128, 235, 1238, 1418, 2477
ApoI RAATTY 5 cut(s) 31, 1561, 1588, 2378, 2470
AsiGI ACCGGT 1 cut(s) 1815
Asp700I GAANNNNTTC 2 cut(s) 1193, 1256
AspLEI GCGC 4 cut(s) 396, 438, 1163, 1711
AspS9I GGNCC 3 cut(s) 21, 236, 1337
AsuC2I CCSGG 1 cut(s) 2105
AsuII TTCGAA 1 cut(s) 274
AsuNHI GCTAGC 1 cut(s) 1013
AvaII GGWCC 1 cut(s) 1337
BalI TGGCCA 2 cut(s) 130, 2479
BauI CACGAG 1 cut(s) 2165
BbsI GAAGAC 1 cut(s) 1445
Bbv12I GWGCWC 1 cut(s) 653
BccI CCATC 8 cut(s) 82, 446, 610, 664, 1672, 2025, 2148, 2269
BceAI ACGGC 2 cut(s) 130, 1408
BcgI CGANNNNNNTGC 2 cut(s) 665, 699
BciT130I CCWGG 1 cut(s) 109
BclI TGATCA 1 cut(s) 1725
BcnI CCSGG 1 cut(s) 2105
BcoDI GTCTC 3 cut(s) 80, 394, 1214
BfaI CTAG 9 cut(s) 702, 792, 1014, 1242, 1920, 2069, 2196, 2202, 2351
BfmI CTRYAG 1 cut(s) 2430
BfuAI ACCTGC 1 cut(s) 764
BglII AGATCT 1 cut(s) 212
BlpI GCTNAGC 1 cut(s) 1004
BmcAI AGTACT 1 cut(s) 877
Bme1390I CCNGG 2 cut(s) 109, 2105
Bme18I GGWCC 1 cut(s) 1337
BmeRI GACNNNNNGTC 1 cut(s) 1449
BmgT120I GGNCC 3 cut(s) 21, 236, 1337
BmiI GGNNCC 2 cut(s) 1437, 1485
BmrFI CCNGG 2 cut(s) 109, 2105
BmrI ACTGGG 1 cut(s) 18
BmsI GCATC 6 cut(s) 1021, 1243, 1712, 1803, 1828, 2201
BmtI GCTAGC 1 cut(s) 1017
BmuI ACTGGG 1 cut(s) 18
BoxI GACNNNNGTC 1 cut(s) 928
BpiI GAAGAC 1 cut(s) 1445
Bpu10I CCTNAGC 1 cut(s) 1152
Bpu1102I GCTNAGC 1 cut(s) 1004
Bpu14I TTCGAA 1 cut(s) 274
BpuEI CTTGAG 2 cut(s) 1266, 1274
BpuMI CCSGG 1 cut(s) 2105
BsaBI GATNNNNATC 1 cut(s) 1233
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 6 cut(s) 107, 258, 378, 919, 1566, 2104
BsaWI WCCGGW 3 cut(s) 268, 742, 1815
Bsc4I CCNNNNNNNGG 8 cut(s) 113, 347, 396, 587, 662, 1059, 1822, 2329
Bse118I RCCGGY 3 cut(s) 43, 1790, 1815
Bse1I ACTGG 7 cut(s) 24, 1339, 1348, 1449, 1485, 1673, 2225
Bse3DI GCAATG 2 cut(s) 331, 812
Bse8I GATNNNNATC 1 cut(s) 1233
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 6 cut(s) 107, 258, 378, 919, 1566, 2104
BseGI GGATG 8 cut(s) 93, 602, 1445, 2036, 2100, 2140, 2284, 2385
BseJI GATNNNNATC 1 cut(s) 1233
BseLI CCNNNNNNNGG 8 cut(s) 113, 347, 396, 587, 662, 1059, 1822, 2329
BseMI GCAATG 2 cut(s) 331, 812
BseMII CTCAG 5 cut(s) 995, 1143, 1225, 1943, 2283
BseNI ACTGG 7 cut(s) 24, 1339, 1348, 1449, 1485, 1673, 2225
BseRI GAGGAG 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 1404
Bsh1236I CGCG 2 cut(s) 921, 1400
BshFI GGCC 6 cut(s) 22, 130, 237, 1240, 1420, 2479
BshTI ACCGGT 1 cut(s) 1815
BsiHKAI GWGCWC 1 cut(s) 653
BsiSI CCGG 6 cut(s) 44, 269, 743, 1791, 1816, 2104
BslFI GGGAC 2 cut(s) 916, 1302
BslI CCNNNNNNNGG 8 cut(s) 113, 347, 396, 587, 662, 1059, 1822, 2329
BsmAI GTCTC 3 cut(s) 80, 394, 1214
BsmFI GGGAC 2 cut(s) 916, 1302
BsmI GAATGC 2 cut(s) 1163, 1178
BsnI GGCC 6 cut(s) 22, 130, 237, 1240, 1420, 2479
Bsp119I TTCGAA 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 653
Bsp1407I TGTACA 1 cut(s) 1474
Bsp1720I GCTNAGC 1 cut(s) 1004
BspACI CCGC 9 cut(s) 117, 347, 527, 919, 921, 977, 996, 1226, 2024
BspANI GGCC 6 cut(s) 22, 130, 237, 1240, 1420, 2479
BspCNI CTCAG 5 cut(s) 996, 1144, 1224, 1944, 2282
BspFNI CGCG 2 cut(s) 921, 1400
BspHI TCATGA 3 cut(s) 1543, 1852, 2486
BspLI GGNNCC 2 cut(s) 1437, 1485
BspMI ACCTGC 1 cut(s) 764
BspOI GCTAGC 1 cut(s) 1017
BspPI GGATC 2 cut(s) 1742, 2069
BspQI GCTCTTC 2 cut(s) 426, 1079
BspT104I TTCGAA 1 cut(s) 274
BsrDI GCAATG 2 cut(s) 331, 812
BsrFI RCCGGY 3 cut(s) 43, 1790, 1815
BsrGI TGTACA 1 cut(s) 1474
BsrI ACTGG 7 cut(s) 24, 1339, 1348, 1449, 1485, 1673, 2225
BssAI RCCGGY 3 cut(s) 43, 1790, 1815
BssECI CCNNGG 6 cut(s) 107, 258, 378, 919, 1566, 2104
BssNI GRCGYC 1 cut(s) 41
BssSI CACGAG 1 cut(s) 2165
BssT1I CCWWGG 2 cut(s) 378, 1566
Bst2BI CACGAG 1 cut(s) 2165
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 4 cut(s) 893, 1691, 1745, 2175
Bst6I CTCTTC 5 cut(s) 307, 426, 1079, 2031, 2081
BstACI GRCGYC 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 698
BstAUI TGTACA 1 cut(s) 1474
BstBI TTCGAA 1 cut(s) 274
BstDEI CTNAG 5 cut(s) 1004, 1152, 1211, 1952, 2269
BstDSI CCRYGG 2 cut(s) 258, 919
BstENI CCTNNNNNAGG 1 cut(s) 585
BstF5I GGATG 8 cut(s) 93, 602, 1445, 2036, 2100, 2140, 2284, 2385
BstFNI CGCG 2 cut(s) 921, 1400
BstHHI GCGC 4 cut(s) 396, 438, 1163, 1711
BstMAI GTCTC 3 cut(s) 80, 394, 1214
BstMWI GCNNNNNNNGC 8 cut(s) 49, 304, 698, 990, 1014, 1401, 1499, 1717
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 2 cut(s) 1657, 2228
BstPAI GACNNNNGTC 1 cut(s) 928
BstSCI CCNGG 2 cut(s) 107, 2103
BstSFI CTRYAG 1 cut(s) 2430
BstUI CGCG 2 cut(s) 921, 1400
BstV2I GAAGAC 1 cut(s) 1445
BstX2I RGATCY 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 622
BstYI RGATCY 1 cut(s) 212
BsuRI GGCC 6 cut(s) 22, 130, 237, 1240, 1420, 2479
BtgI CCRYGG 2 cut(s) 258, 919
BtgZI GCGATG 1 cut(s) 816
BtsCI GGATG 8 cut(s) 93, 602, 1445, 2036, 2100, 2140, 2284, 2385
BtsIMutI CAGTG 1 cut(s) 1680
BveI ACCTGC 1 cut(s) 764
CaiI CAGNNNCTG 2 cut(s) 521, 1951
CciI TCATGA 3 cut(s) 1543, 1852, 2486
CfoI GCGC 4 cut(s) 396, 438, 1163, 1711
Cfr10I RCCGGY 3 cut(s) 43, 1790, 1815
Cfr13I GGNCC 3 cut(s) 21, 236, 1337
Cfr42I CCGCGG 1 cut(s) 922
CseI GACGC 2 cut(s) 49, 1406
Csp6I GTAC 3 cut(s) 876, 1475, 1687
CspAI ACCGGT 1 cut(s) 1815
CviQI GTAC 3 cut(s) 876, 1475, 1687
DdeI CTNAG 5 cut(s) 1004, 1152, 1211, 1952, 2269
DriI GACNNNNNGTC 1 cut(s) 1449
EaeI YGGCCR 2 cut(s) 128, 2477
Eam1104I CTCTTC 5 cut(s) 307, 426, 1079, 2031, 2081
Eam1105I GACNNNNNGTC 1 cut(s) 1449
EarI CTCTTC 5 cut(s) 307, 426, 1079, 2031, 2081
EciI GGCGGA 2 cut(s) 132, 1241
Eco130I CCWWGG 2 cut(s) 378, 1566
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 1 cut(s) 1337
Eco57I CTGAAG 3 cut(s) 171, 2043, 2180
EcoNI CCTNNNNNAGG 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 107
EcoRV GATATC 1 cut(s) 781
EcoT14I CCWWGG 2 cut(s) 378, 1566
ErhI CCWWGG 2 cut(s) 378, 1566
FalI AAGNNNNNCTT 2 cut(s) 1880, 1912
FaqI GGGAC 2 cut(s) 916, 1302
FauI CCCGC 2 cut(s) 340, 989
FauNDI CATATG 1 cut(s) 2363
FbaI TGATCA 1 cut(s) 1725
FokI GGATG 8 cut(s) 80, 589, 1432, 2043, 2087, 2127, 2291, 2372
FspBI CTAG 9 cut(s) 702, 792, 1014, 1242, 1920, 2069, 2196, 2202, 2351
GlaI GCGC 4 cut(s) 395, 437, 1162, 1710
GsaI CCCAGC 1 cut(s) 1408
HaeIII GGCC 6 cut(s) 22, 130, 237, 1240, 1420, 2479
HapII CCGG 6 cut(s) 44, 269, 743, 1791, 1816, 2104
HgaI GACGC 2 cut(s) 49, 1406
HhaI GCGC 4 cut(s) 396, 438, 1163, 1711
Hin1I GRCGYC 1 cut(s) 41
Hin6I GCGC 4 cut(s) 394, 436, 1161, 1709
HinP1I GCGC 4 cut(s) 394, 436, 1161, 1709
HincII GTYRAC 1 cut(s) 1696
HindII GTYRAC 1 cut(s) 1696
HindIII AAGCTT 3 cut(s) 695, 2120, 2437
HpaII CCGG 6 cut(s) 44, 269, 743, 1791, 1816, 2104
Hpy166II GTNNAC 4 cut(s) 748, 1068, 1332, 1696
Hpy188III TCNNGA 6 cut(s) 792, 1186, 1544, 1853, 1973, 2487
Hpy8I GTNNAC 4 cut(s) 748, 1068, 1332, 1696
Hpy99I CGWCG 2 cut(s) 452, 1400
HpyAV CCTTC 8 cut(s) 146, 227, 492, 1085, 1624, 2088, 2321, 2348
HpyCH4III ACNGT 4 cut(s) 893, 1691, 1745, 2175
HpyCH4IV ACGT 2 cut(s) 405, 1311
HpyF10VI GCNNNNNNNGC 8 cut(s) 49, 304, 698, 990, 1014, 1401, 1499, 1717
HpyF3I CTNAG 5 cut(s) 1004, 1152, 1211, 1952, 2269
HpySE526I ACGT 2 cut(s) 405, 1311
Hsp92I GRCGYC 1 cut(s) 41
HspAI GCGC 4 cut(s) 394, 436, 1161, 1709
Ksp22I TGATCA 1 cut(s) 1725
KspI CCGCGG 1 cut(s) 922
LguI GCTCTTC 2 cut(s) 426, 1079
LmnI GCTCC 3 cut(s) 529, 745, 1846
LweI GCATC 6 cut(s) 1021, 1243, 1712, 1803, 1828, 2201
MaeI CTAG 9 cut(s) 702, 792, 1014, 1242, 1920, 2069, 2196, 2202, 2351
MaeII ACGT 2 cut(s) 405, 1311
MaeIII GTNAC 6 cut(s) 486, 893, 945, 1745, 2340, 2357
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 653
MlsI TGGCCA 2 cut(s) 130, 2479
MluNI TGGCCA 2 cut(s) 130, 2479
MlyI GAGTC 4 cut(s) 155, 592, 1843, 2313
Mox20I TGGCCA 2 cut(s) 130, 2479
MroXI GAANNNNTTC 2 cut(s) 1193, 1256
MscI TGGCCA 2 cut(s) 130, 2479
MseI TTAA 2 cut(s) 672, 2448
Msp20I TGGCCA 2 cut(s) 130, 2479
MspA1I CMGCKG 3 cut(s) 521, 921, 996
MspI CCGG 6 cut(s) 44, 269, 743, 1791, 1816, 2104
MspR9I CCNGG 2 cut(s) 109, 2105
Mva1269I GAATGC 2 cut(s) 1163, 1178
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 2 cut(s) 921, 1400
MwoI GCNNNNNNNGC 8 cut(s) 49, 304, 698, 990, 1014, 1401, 1499, 1717
NciI CCSGG 1 cut(s) 2105
NdeI CATATG 1 cut(s) 2363
NheI GCTAGC 1 cut(s) 1013
NlaIV GGNNCC 2 cut(s) 1437, 1485
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 2 cut(s) 945, 1745
NspI RCATGY 2 cut(s) 1657, 2228
NspV TTCGAA 1 cut(s) 274
PaeI GCATGC 1 cut(s) 2228
PagI TCATGA 3 cut(s) 1543, 1852, 2486
PaqCI CACCTGC 1 cut(s) 764
PciI ACATGT 1 cut(s) 1653
PciSI GCTCTTC 2 cut(s) 426, 1079
PcsI WCGNNNNNNNCGW 1 cut(s) 897
PctI GAATGC 2 cut(s) 1163, 1178
PdmI GAANNNNTTC 2 cut(s) 1193, 1256
PfeI GAWTC 7 cut(s) 761, 1257, 1754, 1802, 1948, 2152, 2402
PinAI ACCGGT 1 cut(s) 1815
PleI GAGTC 4 cut(s) 154, 592, 1843, 2313
PpsI GAGTC 4 cut(s) 154, 592, 1843, 2313
PscI ACATGT 1 cut(s) 1653
PshAI GACNNNNGTC 1 cut(s) 928
Psp6I CCWGG 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 1404
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 1437, 1485
PspPI GGNCC 3 cut(s) 21, 236, 1337
PsrI GAACNNNNNNTAC 4 cut(s) 255, 287, 1458, 1490
PstNI CAGNNNCTG 2 cut(s) 521, 1951
PsuI RGATCY 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 3 cut(s) 877, 1476, 1688
RsaNI GTAC 3 cut(s) 876, 1475, 1687
SacII CCGCGG 1 cut(s) 922
SapI GCTCTTC 2 cut(s) 426, 1079
SaqAI TTAA 2 cut(s) 672, 2448
Sau96I GGNCC 3 cut(s) 21, 236, 1337
ScaI AGTACT 1 cut(s) 877
SchI GAGTC 4 cut(s) 155, 592, 1843, 2313
ScrFI CCNGG 2 cut(s) 109, 2105
SduI GDGCHC 1 cut(s) 653
SfaNI GCATC 6 cut(s) 1021, 1243, 1712, 1803, 1828, 2201
SfcI CTRYAG 1 cut(s) 2430
Sfr303I CCGCGG 1 cut(s) 922
SfuI TTCGAA 1 cut(s) 274
SgrAI CRCCGGYG 1 cut(s) 43
SgrBI CCGCGG 1 cut(s) 922
SinI GGWCC 1 cut(s) 1337
SmlI CTYRAG 2 cut(s) 1281, 1289
SmoI CTYRAG 2 cut(s) 1281, 1289
SphI GCATGC 1 cut(s) 2228
SsiI CCGC 9 cut(s) 117, 347, 527, 919, 921, 977, 996, 1226, 2024
SspMI CTAG 9 cut(s) 702, 792, 1014, 1242, 1920, 2069, 2196, 2202, 2351
StyD4I CCNGG 2 cut(s) 107, 2103
StyI CCWWGG 2 cut(s) 378, 1566
TaaI ACNGT 4 cut(s) 893, 1691, 1745, 2175
TaiI ACGT 2 cut(s) 408, 1314
TaqI TCGA 6 cut(s) 274, 331, 572, 820, 900, 1185
TaqII GACCGA 1 cut(s) 441
TatI WGTACW 2 cut(s) 875, 1474
TfiI GAWTC 7 cut(s) 761, 1257, 1754, 1802, 1948, 2152, 2402
Tru1I TTAA 2 cut(s) 672, 2448
Tru9I TTAA 2 cut(s) 672, 2448
TscAI CASTG 1 cut(s) 1680
TseFI GTSAC 2 cut(s) 945, 1745
Tsp45I GTSAC 2 cut(s) 945, 1745
TspGWI ACGGA 3 cut(s) 247, 1085, 1269
TspRI CASTG 1 cut(s) 1680
VpaK11BI GGWCC 1 cut(s) 1337
XagI CCTNNNNNAGG 1 cut(s) 585
XapI RAATTY 5 cut(s) 31, 1561, 1588, 2378, 2470
XbaI TCTAGA 1 cut(s) 791
XceI RCATGY 2 cut(s) 1657, 2228
XcmI CCANNNNNNNNNTGG 2 cut(s) 105, 138
XmnI GAANNNNTTC 2 cut(s) 1193, 1256
XspI CTAG 9 cut(s) 702, 792, 1014, 1242, 1920, 2069, 2196, 2202, 2351
ZrmI AGTACT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.