Rroxscaffold_2G00141580

Replication factor C subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
79818394 .. 79822020
3627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141580.1

Sequence Viewer

Length: 2364 bp
ATGGAGAATAACTTTTCAAGGCATAGCAGAACTTCTCAGACCTCACTGAAGACCCGGCGCAGTGGTTATGAACCATCTGACAACGAGACTGATTTCCTAGAAACGCCGTGGCAGGGCCACAATAGGAAGGTCAGTGGAGTCTTAGAATCTGAGGTGACAAAAGCTGCAGGGTTGGAGTTGGCAAGAAACATTAGCCCTTTCAAACATAGCCGGAGGCACTCTTCCAGGTTTGAATATGATGCTTCTTCTGCAAGAAATGATGCAGTAGTAAGCCCGGTCCGAAGAAGAACCAGCAGTAAGTCACCATACAAGCAAAGAAGAGAAGATGGTACTGTTCGTTCACCAATAGCAGGTGTTGAAACTCACAGAAATATCAGTCCCTTGTCAAAAGCTGAGCGCAGAAGACGTGCTTCTCCTTTGAAACCAGAAAAAGAAGGGCATGATGTGAATGATGCTGATCAAATTGTGAACTCAAACTGGAAACAAAGCCAAAGAAGGCCCGGTAGAGACCCCCAAAGCAGAAGATCATCTACTGCCCCGAGAGTTCGAGCAAGATCAGAAGTATTAACAACACCAACTGCAAGGGAGAGAACACCATCACCATTGTCAAAGACCCCGGTATTAACAACACCAACTGCAAGGGAGAGAACACCATCCCCAATCTCAAAAGGGTTGATCCAGCAACAAAGACAACACACAAAATCGCCGTCTGTTGGTGAGATCAATGAGATGATTGCCAATGCAAAGCTTGCTAGAACTCCTTTGGAGGCTAATTCTCCATTAGCTTTCGGAAGTTCAGAGTCTTTTGCACCAGGTGATATCTTCTTCTCTCGTGAGTGCAAAATCTTGGCACTGCCCAAAACTGTCAATCCCACACCAAAACCAAAGAATGCACTGCCCAAAACTGTCAATCCCATACCAAAACCAAAGAATGGTAGTGGTTTTGAGAACCGCTTAATTAGTCCTAATGTCAAAATGGTTACCCCAAGAGGAAATGGTTTCGATCAGAATGCTCGAGGGACTCCATTAAGCTATAATTTGTCACAGACAACCACAACAACATCAAGCTCAGCATTGAGCAGGCAAAGCAGTAAGATGAGTGGTACAAGTGGGAGCACAACTGCGAGTGCCAAGAAATTCACAGCAAATAGAAAGAAAAGTGAGAGTCACTCACTATTTGCTTGTATGAGAAAGGGAGGGTCTTGTCGGAAAACAAAATCACCTGAACGTTCTCCTGTTTTCAATGAAGCTTCATTTATACAAAAGGCATTTGTGGATGAAAGTCTAAGGCAGTTTTGGGCTGATAAGCATCGACCGGCTTCGTTGAATGGATTCACTTGCCACATGCAAGAAGCTCAACTTCTCAAGGATCTGGTAATTGACAATAAATTTCCCCACATTTTGTTATCTGGACCATCTGGTTCTGGGAAAAAAGCTCTAACAATGGCTTTCCTAAGAGAGATATATGGTGATGCAAGCTGGGAAATATCTCATGATTTAAGATACTTCCAGATTCAGGAACAAATGTCGATGCAAGTAATGGTTCCTTTGACATCCAGTGCTCACCATATAGAGCTTAATGTCCGCGTTGAAGCAAATGCTAGATATGCATTGATGGGTTTAGCAAAGGAAATCAACAGTGAGAATGACATTGCTCCTGAAATCAGCACTACTAATCTCAAGGGAAATCATAAAGTGCTAGTTCTCTACGATGTTGACCGAGCAGCAGAACATATTCAGCATTTGATCAAATGGATGATGGACTGTTACTCAGAAGCTTGTAAACTCATTCTCTGCTGTGAAAATGATGAAGACATCGTTGAATCAGTGAAAAATCGGTGCACAGTTATCAAGCTTGATGCTCCTGTGACTCAAGAAATTACGGAAGTTCTTGCTCAGATAGCAAGGAAGGAAAACTTTGACCTACCTATGAACTTTGCTAATAAGATTGCTAACAAATCCAAGCAGAGCCTGAGAAAAGCAATTATGGGCCTTGAAGCAACCAAAGCACACAACTATCCTTTTGTAGATGACCAACCAATTCCAATTGGATGGGAAGAGGTACTTGTTGAAGTTGCTGCAGAAATCCTAGCTGACCCATCACCAAAGAGGTTATTTTTCATCCGGGGAAAGTTTCAAAAGCTTCTTGTGGGTTTTGTACATCCGAAACTGATTCTACTGAAGCTGGTAGAACAGTTCCTTAAAGCAATGGATGCTAGTTCTAAAAGGGACCTATATTATTGGCATGCTTACTATGAGAAAAGACTCCCAGCAGGAGCAAGTGCTTTACTAAAACTAGAAGAATTTGTGGCCAAGTTCATGAGCATATACCGAAAGAGTGCCAACAGCCGTCAGTACGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

787

Amino Acids

88.32

Weight (kDa)

9.79

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RCF1-5-like_lid PF21960 630 - 669 2.8e-08 RCF1/5-like, AAA+ ATPase lid domain
RFC_C PF22534 685 - 774 2.2e-10 Replication factor C subunit 3, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016238)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12990
malus_domestica MD02G1144400.v1.1 MD15G1258100.v1.1
prunus_persica Prupe.7G157200_v2.0.a1
pyrus_communis pycom15g22580
rosa_chinensis RchiOBHm_Chr2g0101071
rosa_laevigata RLG00000017049
rosa_multiflora Rmu_sc0007698.1_g000014
rosa_roxburghii Rroxscaffold_2G00141580
rosa_rugosa Rorug02G0096900
rosa_samantha Rh2AG142900 Rh2BG148000 Rh2CG149500 Rh2DG148500
rosa_wichuraiana Rw2G011260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 341
AccB7I CCANNNNNTGG 1 cut(s) 932
AccII CGCG 1 cut(s) 1587
AciI CCGC 2 cut(s) 952, 1585
AclI AACGTT 1 cut(s) 1228
AclWI GGATC 2 cut(s) 670, 1377
AcoI YGGCCR 1 cut(s) 2310
AcsI RAATTY 3 cut(s) 1136, 1388, 2303
AcuI CTGAAG 2 cut(s) 68, 2201
AdeI CACNNNGTG 1 cut(s) 815
AfaI GTAC 5 cut(s) 331, 1105, 2064, 2160, 2357
AfiI CCNNNNNNNGG 5 cut(s) 113, 350, 713, 932, 1516
AflIII ACRYGT 1 cut(s) 2358
AjiI CACGTC 1 cut(s) 407
AjnI CCWGG 2 cut(s) 224, 811
Alw21I GWGCWC 3 cut(s) 1118, 1564, 1844
Alw26I GTCTC 2 cut(s) 80, 501
Alw44I GTGCAC 1 cut(s) 1840
AlwI GGATC 2 cut(s) 670, 1377
AlwNI CAGNNNCTG 1 cut(s) 1972
Ama87I CYCGRG 2 cut(s) 538, 1014
AoxI GGCC 4 cut(s) 115, 497, 1990, 2310
ApaLI GTGCAC 1 cut(s) 1840
ApeKI GCWGC 3 cut(s) 164, 1724, 2078
ApoI RAATTY 3 cut(s) 1136, 1388, 2303
ArsI GACNNNNNNTTYG 2 cut(s) 692, 724
Asp700I GAANNNNTTC 2 cut(s) 1331, 1734
AspLEI GCGC 2 cut(s) 60, 399
AspS9I GGNCC 6 cut(s) 115, 277, 498, 1412, 1990, 2230
AsuC2I CCSGG 5 cut(s) 55, 275, 501, 617, 2126
AvaI CYCGRG 2 cut(s) 538, 1014
AvaII GGWCC 3 cut(s) 277, 1412, 2230
BaeGI GKGCMC 1 cut(s) 1844
BalI TGGCCA 1 cut(s) 2312
BarI GAAGNNNNNNTAC 2 cut(s) 514, 546
BauI CACGAG 1 cut(s) 831
BbsI GAAGAC 3 cut(s) 56, 409, 1818
Bbv12I GWGCWC 3 cut(s) 1118, 1564, 1844
BbvI GCAGC 3 cut(s) 151, 1736, 2065
BccI CCATC 9 cut(s) 82, 320, 604, 661, 1423, 1609, 1753, 2046, 2107
BceAI ACGGC 3 cut(s) 91, 691, 2334
BcgI CGANNNNNNTGC 2 cut(s) 992, 1026
BciT130I CCWGG 2 cut(s) 226, 813
BclI TGATCA 2 cut(s) 457, 1746
BcnI CCSGG 5 cut(s) 55, 275, 501, 617, 2126
BcoDI GTCTC 2 cut(s) 80, 501
BfaI CTAG 7 cut(s) 98, 753, 1602, 1700, 2090, 2217, 2297
BfmI CTRYAG 2 cut(s) 165, 2079
BfuAI ACCTGC 1 cut(s) 341
BisI GCNGC 3 cut(s) 165, 1725, 2079
BlpI GCTNAGC 2 cut(s) 393, 1069
BlsI GCNGC 3 cut(s) 166, 1726, 2080
Bme1390I CCNGG 7 cut(s) 55, 226, 275, 501, 617, 813, 2126
Bme18I GGWCC 3 cut(s) 277, 1412, 2230
BmeT110I CYCGRG 2 cut(s) 538, 1014
BmgBI CACGTC 1 cut(s) 407
BmgT120I GGNCC 6 cut(s) 115, 277, 498, 1412, 1990, 2230
BmiI GGNNCC 2 cut(s) 1545, 2231
BmrFI CCNGG 7 cut(s) 55, 226, 275, 501, 617, 813, 2126
BmsI GCATC 8 cut(s) 229, 250, 442, 1318, 1462, 1521, 1849, 2203
BpiI GAAGAC 3 cut(s) 56, 409, 1818
BplI GAGNNNNNCTC 2 cut(s) 1154, 1186
Bpu1102I GCTNAGC 2 cut(s) 393, 1069
BpuEI CTTGAG 3 cut(s) 1349, 1664, 1857
BpuMI CCSGG 5 cut(s) 55, 275, 501, 617, 2126
BsaAI YACGTR 1 cut(s) 2359
BsaBI GATNNNNATC 2 cut(s) 456, 1308
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 107, 615, 2125
Bsc4I CCNNNNNNNGG 5 cut(s) 113, 350, 713, 932, 1516
Bse118I RCCGGY 1 cut(s) 1315
Bse1I ACTGG 2 cut(s) 482, 1557
Bse3DI GCAATG 2 cut(s) 1650, 2214
Bse8I GATNNNNATC 2 cut(s) 456, 1308
BseBI CCWGG 2 cut(s) 226, 813
BseDI CCNNGG 3 cut(s) 107, 615, 2125
BseGI GGATG 8 cut(s) 653, 1282, 1553, 1761, 2057, 2121, 2161, 2218
BseJI GATNNNNATC 2 cut(s) 456, 1308
BseLI CCNNNNNNNGG 5 cut(s) 113, 350, 713, 932, 1516
BseMI GCAATG 2 cut(s) 1650, 2214
BseMII CTCAG 7 cut(s) 50, 141, 384, 1083, 1785, 1910, 1964
BseNI ACTGG 2 cut(s) 482, 1557
BseSI GKGCMC 1 cut(s) 1844
BseXI GCAGC 3 cut(s) 151, 1736, 2065
BseYI CCCAGC 2 cut(s) 1479, 2269
Bsh1236I CGCG 1 cut(s) 1587
Bsh1285I CGRYCG 1 cut(s) 1316
BshFI GGCC 4 cut(s) 117, 499, 1992, 2312
BsiEI CGRYCG 1 cut(s) 1316
BsiHKAI GWGCWC 3 cut(s) 1118, 1564, 1844
BsiHKCI CYCGRG 2 cut(s) 538, 1014
BsiSI CCGG 7 cut(s) 55, 211, 275, 501, 617, 1316, 2125
BslFI GGGAC 3 cut(s) 363, 1033, 2243
BslI CCNNNNNNNGG 5 cut(s) 113, 350, 713, 932, 1516
BsmAI GTCTC 2 cut(s) 80, 501
BsmFI GGGAC 3 cut(s) 363, 1033, 2243
BsmI GAATGC 2 cut(s) 895, 1015
BsnI GGCC 4 cut(s) 117, 499, 1992, 2312
Bso31I GGTCTC 1 cut(s) 501
BsoBI CYCGRG 2 cut(s) 538, 1014
Bsp1286I GDGCHC 3 cut(s) 1118, 1564, 1844
Bsp1407I TGTACA 1 cut(s) 2158
Bsp143I GATC 8 cut(s) 457, 524, 554, 675, 720, 1003, 1369, 1746
Bsp1720I GCTNAGC 2 cut(s) 393, 1069
BspACI CCGC 2 cut(s) 952, 1585
BspANI GGCC 4 cut(s) 117, 499, 1992, 2312
BspCNI CTCAG 7 cut(s) 49, 142, 385, 1082, 1784, 1909, 1965
BspFNI CGCG 1 cut(s) 1587
BspHI TCATGA 2 cut(s) 1492, 2319
BspLI GGNNCC 2 cut(s) 1545, 2231
BspMAI CTGCAG 2 cut(s) 169, 2083
BspMI ACCTGC 1 cut(s) 341
BspPI GGATC 2 cut(s) 670, 1377
BspTNI GGTCTC 1 cut(s) 501
BsrDI GCAATG 2 cut(s) 1650, 2214
BsrFI RCCGGY 1 cut(s) 1315
BsrGI TGTACA 1 cut(s) 2158
BsrI ACTGG 2 cut(s) 482, 1557
BssAI RCCGGY 1 cut(s) 1315
BssECI CCNNGG 3 cut(s) 107, 615, 2125
BssMI GATC 8 cut(s) 457, 524, 554, 675, 720, 1003, 1369, 1746
BssSI CACGAG 1 cut(s) 831
Bst2BI CACGAG 1 cut(s) 831
Bst2UI CCWGG 2 cut(s) 226, 813
Bst4CI ACNGT 7 cut(s) 334, 865, 907, 1640, 1766, 1846, 2196
Bst6I CTCTTC 3 cut(s) 226, 313, 2052
BstAPI GCANNNNNTGC 2 cut(s) 749, 2213
BstAUI TGTACA 1 cut(s) 2158
BstBAI YACGTR 1 cut(s) 2359
BstC8I GCNNGC 4 cut(s) 750, 1082, 1477, 2247
BstDSI CCRYGG 1 cut(s) 107
BstEII GGTNACC 1 cut(s) 979
BstF5I GGATG 8 cut(s) 653, 1282, 1553, 1761, 2057, 2121, 2161, 2218
BstFNI CGCG 1 cut(s) 1587
BstHHI GCGC 2 cut(s) 60, 399
BstKTI GATC 8 cut(s) 460, 527, 557, 678, 723, 1006, 1372, 1749
BstMAI GTCTC 2 cut(s) 80, 501
BstMBI GATC 8 cut(s) 457, 524, 554, 675, 720, 1003, 1369, 1746
BstMCI CGRYCG 1 cut(s) 1316
BstMWI GCNNNNNNNGC 7 cut(s) 248, 749, 1086, 1607, 1901, 2006, 2213
BstNI CCWGG 2 cut(s) 226, 813
BstNSI RCATGY 2 cut(s) 1348, 2249
BstPI GGTNACC 1 cut(s) 979
BstSCI CCNGG 7 cut(s) 53, 224, 273, 499, 615, 811, 2124
BstSFI CTRYAG 2 cut(s) 165, 2079
BstSLI GKGCMC 1 cut(s) 1844
BstUI CGCG 1 cut(s) 1587
BstV1I GCAGC 3 cut(s) 151, 1736, 2065
BstV2I GAAGAC 3 cut(s) 56, 409, 1818
BstX2I RGATCY 1 cut(s) 1369
BstXI CCANNNNNNTGG 1 cut(s) 2052
BstYI RGATCY 1 cut(s) 1369
BsuRI GGCC 4 cut(s) 117, 499, 1992, 2312
BtgI CCRYGG 1 cut(s) 107
BtrI CACGTC 1 cut(s) 407
BtsCI GGATG 8 cut(s) 653, 1282, 1553, 1761, 2057, 2121, 2161, 2218
BtsI GCAGTG 3 cut(s) 67, 851, 893
BtsIMutI CAGTG 8 cut(s) 44, 67, 139, 851, 893, 1564, 1645, 1833
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 4 cut(s) 750, 1082, 1477, 2247
CaiI CAGNNNCTG 1 cut(s) 1972
CciI TCATGA 2 cut(s) 1492, 2319
CfoI GCGC 2 cut(s) 60, 399
Cfr10I RCCGGY 1 cut(s) 1315
Cfr13I GGNCC 6 cut(s) 115, 277, 498, 1412, 1990, 2230
CpoI CGGWCCG 1 cut(s) 277
CsiI ACCWGGT 1 cut(s) 811
Csp6I GTAC 5 cut(s) 330, 1104, 2063, 2159, 2356
CspI CGGWCCG 1 cut(s) 277
CviAII CATG 5 cut(s) 440, 1345, 1493, 2246, 2320
CviQI GTAC 5 cut(s) 330, 1104, 2063, 2159, 2356
DpnI GATC 8 cut(s) 459, 526, 556, 677, 722, 1005, 1371, 1748
DpnII GATC 8 cut(s) 457, 524, 554, 675, 720, 1003, 1369, 1746
DraIII CACNNNGTG 1 cut(s) 815
EaeI YGGCCR 1 cut(s) 2310
Eam1104I CTCTTC 3 cut(s) 226, 313, 2052
EarI CTCTTC 3 cut(s) 226, 313, 2052
Eco31I GGTCTC 1 cut(s) 501
Eco32I GATATC 1 cut(s) 820
Eco47I GGWCC 3 cut(s) 277, 1412, 2230
Eco57I CTGAAG 2 cut(s) 68, 2201
Eco88I CYCGRG 2 cut(s) 538, 1014
Eco91I GGTNACC 1 cut(s) 979
EcoO109I RGGNCCY 1 cut(s) 2230
EcoO65I GGTNACC 1 cut(s) 979
EcoRII CCWGG 2 cut(s) 224, 811
EcoRV GATATC 1 cut(s) 820
EcoT22I ATGCAT 1 cut(s) 1612
FaeI CATG 5 cut(s) 443, 1348, 1496, 2249, 2323
FalI AAGNNNNNCTT 8 cut(s) 394, 426, 1344, 1376, 1901, 1933, 2049, 2081
FaqI GGGAC 3 cut(s) 363, 1033, 2243
FatI CATG 5 cut(s) 439, 1344, 1492, 2245, 2319
FbaI TGATCA 2 cut(s) 457, 1746
Fnu4HI GCNGC 3 cut(s) 165, 1725, 2079
FokI GGATG 8 cut(s) 640, 1289, 1540, 1768, 2064, 2108, 2148, 2225
Fsp4HI GCNGC 3 cut(s) 165, 1725, 2079
FspBI CTAG 7 cut(s) 98, 753, 1602, 1700, 2090, 2217, 2297
GlaI GCGC 2 cut(s) 59, 398
GluI GCNGC 3 cut(s) 165, 1725, 2079
GsaI CCCAGC 2 cut(s) 1483, 2273
HaeIII GGCC 4 cut(s) 117, 499, 1992, 2312
HapII CCGG 7 cut(s) 55, 211, 275, 501, 617, 1316, 2125
HhaI GCGC 2 cut(s) 60, 399
Hin1II CATG 5 cut(s) 443, 1348, 1496, 2249, 2323
Hin6I GCGC 2 cut(s) 58, 397
HinP1I GCGC 2 cut(s) 58, 397
HincII GTYRAC 1 cut(s) 1717
HindII GTYRAC 1 cut(s) 1717
HindIII AAGCTT 5 cut(s) 746, 1248, 1776, 1853, 2141
HpaII CCGG 7 cut(s) 55, 211, 275, 501, 617, 1316, 2125
Hpy166II GTNNAC 5 cut(s) 341, 469, 1717, 1784, 1842
Hpy188III TCNNGA 8 cut(s) 833, 1410, 1493, 1510, 1517, 1658, 1874, 2320
Hpy8I GTNNAC 5 cut(s) 341, 469, 1717, 1784, 1842
HpyAV CCTTC 4 cut(s) 121, 428, 489, 1903
HpyCH4III ACNGT 7 cut(s) 334, 865, 907, 1640, 1766, 1846, 2196
HpyCH4IV ACGT 3 cut(s) 406, 1228, 2358
HpyF10VI GCNNNNNNNGC 7 cut(s) 248, 749, 1086, 1607, 1901, 2006, 2213
HpySE526I ACGT 3 cut(s) 406, 1228, 2358
Hsp92II CATG 5 cut(s) 443, 1348, 1496, 2249, 2323
HspAI GCGC 2 cut(s) 58, 397
Ksp22I TGATCA 2 cut(s) 457, 1746
Kzo9I GATC 8 cut(s) 457, 524, 554, 675, 720, 1003, 1369, 1746
LmnI GCTCC 4 cut(s) 1113, 1660, 1867, 2276
Lsp1109I GCAGC 3 cut(s) 151, 1736, 2065
LweI GCATC 8 cut(s) 229, 250, 442, 1318, 1462, 1521, 1849, 2203
MabI ACCWGGT 1 cut(s) 811
MaeI CTAG 7 cut(s) 98, 753, 1602, 1700, 2090, 2217, 2297
MaeII ACGT 3 cut(s) 406, 1228, 2358
MaeIII GTNAC 7 cut(s) 154, 300, 979, 1041, 1166, 1766, 1867
MalI GATC 8 cut(s) 459, 526, 556, 677, 722, 1005, 1371, 1748
MboI GATC 8 cut(s) 457, 524, 554, 675, 720, 1003, 1369, 1746
MfeI CAATTG 1 cut(s) 2046
MflI RGATCY 1 cut(s) 1369
MhlI GDGCHC 3 cut(s) 1118, 1564, 1844
MlsI TGGCCA 1 cut(s) 2312
MluNI TGGCCA 1 cut(s) 2312
MlyI GAGTC 6 cut(s) 147, 809, 1015, 1174, 1864, 2259
MmeI TCCRAC 2 cut(s) 153, 1187
MnlI CCTC 9 cut(s) 52, 145, 207, 760, 983, 1010, 1190, 2053, 2103
Mox20I TGGCCA 1 cut(s) 2312
Mph1103I ATGCAT 1 cut(s) 1612
MroXI GAANNNNTTC 2 cut(s) 1331, 1734
MscI TGGCCA 1 cut(s) 2312
MseI TTAA 7 cut(s) 566, 623, 956, 1028, 1499, 1578, 2202
Msp20I TGGCCA 1 cut(s) 2312
MspI CCGG 7 cut(s) 55, 211, 275, 501, 617, 1316, 2125
MspR9I CCNGG 7 cut(s) 55, 226, 275, 501, 617, 813, 2126
MunI CAATTG 1 cut(s) 2046
Mva1269I GAATGC 2 cut(s) 895, 1015
MvaI CCWGG 2 cut(s) 226, 813
MvnI CGCG 1 cut(s) 1587
MwoI GCNNNNNNNGC 7 cut(s) 248, 749, 1086, 1607, 1901, 2006, 2213
NciI CCSGG 5 cut(s) 55, 275, 501, 617, 2126
NdeII GATC 8 cut(s) 457, 524, 554, 675, 720, 1003, 1369, 1746
NlaIII CATG 5 cut(s) 443, 1348, 1496, 2249, 2323
NlaIV GGNNCC 2 cut(s) 1545, 2231
NmuCI GTSAC 5 cut(s) 154, 300, 1041, 1166, 1867
NsiI ATGCAT 1 cut(s) 1612
NspI RCATGY 2 cut(s) 1348, 2249
PaeI GCATGC 1 cut(s) 2249
PaeR7I CTCGAG 1 cut(s) 1014
PagI TCATGA 2 cut(s) 1492, 2319
PaqCI CACCTGC 1 cut(s) 341
PctI GAATGC 2 cut(s) 895, 1015
PdmI GAANNNNTTC 2 cut(s) 1331, 1734
PfeI GAWTC 5 cut(s) 146, 1332, 1513, 1823, 2173
PflMI CCANNNNNTGG 1 cut(s) 932
PkrI GCNGC 3 cut(s) 166, 1726, 2080
PleI GAGTC 6 cut(s) 146, 808, 1015, 1173, 1864, 2259
PpsI GAGTC 6 cut(s) 146, 808, 1015, 1173, 1864, 2259
Ppu21I YACGTR 1 cut(s) 2359
PpuMI RGGWCCY 1 cut(s) 2230
Psp1406I AACGTT 1 cut(s) 1228
Psp5II RGGWCCY 1 cut(s) 2230
Psp6I CCWGG 2 cut(s) 224, 811
PspEI GGTNACC 1 cut(s) 979
PspFI CCCAGC 2 cut(s) 1479, 2269
PspGI CCWGG 2 cut(s) 224, 811
PspN4I GGNNCC 2 cut(s) 1545, 2231
PspPI GGNCC 6 cut(s) 115, 277, 498, 1412, 1990, 2230
PspPPI RGGWCCY 1 cut(s) 2230
PspXI VCTCGAGB 1 cut(s) 1014
PsrI GAACNNNNNNTAC 2 cut(s) 322, 354
PstI CTGCAG 2 cut(s) 169, 2083
PstNI CAGNNNCTG 1 cut(s) 1972
PsuI RGATCY 1 cut(s) 1369
RsaI GTAC 5 cut(s) 331, 1105, 2064, 2160, 2357
RsaNI GTAC 5 cut(s) 330, 1104, 2063, 2159, 2356
Rsr2I CGGWCCG 1 cut(s) 277
RsrII CGGWCCG 1 cut(s) 277
SaqAI TTAA 7 cut(s) 566, 623, 956, 1028, 1499, 1578, 2202
SatI GCNGC 3 cut(s) 165, 1725, 2079
Sau3AI GATC 8 cut(s) 457, 524, 554, 675, 720, 1003, 1369, 1746
Sau96I GGNCC 6 cut(s) 115, 277, 498, 1412, 1990, 2230
SchI GAGTC 6 cut(s) 147, 809, 1015, 1174, 1864, 2259
ScrFI CCNGG 7 cut(s) 55, 226, 275, 501, 617, 813, 2126
SduI GDGCHC 3 cut(s) 1118, 1564, 1844
SexAI ACCWGGT 1 cut(s) 811
SfaNI GCATC 8 cut(s) 229, 250, 442, 1318, 1462, 1521, 1849, 2203
SfcI CTRYAG 2 cut(s) 165, 2079
Sfr274I CTCGAG 1 cut(s) 1014
SinI GGWCC 3 cut(s) 277, 1412, 2230
SlaI CTCGAG 1 cut(s) 1014
SmlI CTYRAG 4 cut(s) 1014, 1364, 1679, 1872
SmoI CTYRAG 4 cut(s) 1014, 1364, 1679, 1872
SphI GCATGC 1 cut(s) 2249
SsiI CCGC 2 cut(s) 952, 1585
SspMI CTAG 7 cut(s) 98, 753, 1602, 1700, 2090, 2217, 2297
StyD4I CCNGG 7 cut(s) 53, 224, 273, 499, 615, 811, 2124
TaaI ACNGT 7 cut(s) 334, 865, 907, 1640, 1766, 1846, 2196
TaiI ACGT 3 cut(s) 409, 1231, 2361
TaqI TCGA 5 cut(s) 547, 1002, 1015, 1312, 1529
TaqII GACCGA 1 cut(s) 1734
TatI WGTACW 1 cut(s) 2158
TfiI GAWTC 5 cut(s) 146, 1332, 1513, 1823, 2173
Tru1I TTAA 7 cut(s) 566, 623, 956, 1028, 1499, 1578, 2202
Tru9I TTAA 7 cut(s) 566, 623, 956, 1028, 1499, 1578, 2202
TscAI CASTG 8 cut(s) 51, 67, 139, 858, 900, 1564, 1645, 1833
TseFI GTSAC 5 cut(s) 154, 300, 1041, 1166, 1867
TseI GCWGC 3 cut(s) 164, 1724, 2078
Tsp45I GTSAC 5 cut(s) 154, 300, 1041, 1166, 1867
TspDTI ATGAA 8 cut(s) 84, 1242, 1260, 1293, 1824, 1946, 2110, 2308
TspGWI ACGGA 1 cut(s) 1898
TspRI CASTG 8 cut(s) 51, 67, 139, 858, 900, 1564, 1645, 1833
Van91I CCANNNNNTGG 1 cut(s) 932
VneI GTGCAC 1 cut(s) 1840
VpaK11BI GGWCC 3 cut(s) 277, 1412, 2230
XapI RAATTY 3 cut(s) 1136, 1388, 2303
XceI RCATGY 2 cut(s) 1348, 2249
XhoI CTCGAG 1 cut(s) 1014
XmnI GAANNNNTTC 2 cut(s) 1331, 1734
XspI CTAG 7 cut(s) 98, 753, 1602, 1700, 2090, 2217, 2297
Zsp2I ATGCAT 1 cut(s) 1612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.