RchiOBHm_Chr2g0101071

Replication factor C subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016238
Physical Location & Seq
Reverse (-)
12818242 .. 12821803
3562 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47569

Sequence Viewer

Length: 2355 bp
ATGGAGAATCACTTTTCAAGGCATAGCAGAACTTCTCAGACCTCACTGAAGACCCGGCGCAGTGGTTATGAACCATCTGACAACGAGACTGATTTCCTAGAAACGCCGTGGCATGGCCACAATAGGAAGATCAGTGGAGGCTTAGAATCTGAGGTGACAAAAGCTGCAGGGTTGGAGTTGGCAAGAAACATTAGCCCTTTCAAACATAGCCGGAGGCACGCTTCCAGGTTTGAATATGATGCTTCTTCTGCAAGAAATGATGCAGTAGTAAGCCCGGTCCGAAGAAGAACCAGCAGTAAGTCACCATACAAGCAAAGAAGAGAAGATGGTACTGTTTGTTCACCAATAGCAGGTGTTGAAACTCGCAGAAATATCAGTCCCTTGTCAAAAGCTGAGCGCAGAAGAGGTGCTTCTCCTTTGAAACCAGAAAAAGAAGGGCATGATGTGAATGATGCTGATCAAATTGTGAACTCAAACAGGAAACAAAGCCAAAGAAGGCCCGGTAGAGACCCCCAAAGCAGAAGATCATCTACTGCCCCGAGAGTTCGAGCAAGATCAGAAGTAGAAAAAAAAGGCAACTATAGTGCAACACCAACTAAAGGTGAAAGAACACCATCACCATTGTCAAAGGCCCTGGTATTAACAACACCAACTGCAAGGGAGAGAACACCATCACCATTGTCAAAGGCCCCGGTATTAACAACACCAACTGCAAGGGAGAGAACACCATCCCCAATCTCAAAAGGGTTGATCCAGCAACAAAGACAACACACAAAATCGCCGTCTGTTGGTGAGATCAATGAGATGATTGCCAATGCAAAGCTTGCTAGAACTCCTTTGGAGGCTAATTCTCCATTAGCTTTCGGAAGTTCAGAGTCTTTTGCACCAGGTGATATCTTCTTCTCTCGTGAGTGCAAAATCTTGGCACTGCCCAAAACTGTCAATCCCACACCAAAACCAAAGAATGCACTGCCCAAAACTGTCAATCCCATACCAAAACCAAAGAATGGTAGTGGTTTTGAGAACCGCTTAATTAGTCCTAATGTCAAAATGGTTACCCCAAGAGGAAATGGTTTCGATCAGAATGCTCGAGGGACTCCATTAAGCTATAATTTGTCACAGACAACCACAACAACATCAAGCTCAGCATTGAGCAGGCAAAGCAGTAAGATGAGTGGTACAAGTGGGAGCACAACTGCTAGTGCCAAGAAATTCACAGCAAATAGAAAGAAAAGTGAGAGTCACTCACTGTTTGCTTGTATGAGAAAGGGAGGGTCTTGTCGGAAAACAAAATCACCTGAGCATTCTCCTGTTTTCAATGAAGCTTCATTTATACAGAAGGCATTTGTGGATGAAAGTCTTAGGCAGTTTTGGGCTGATAACCATCGACCGGCTTCGTTGAATGGATTCACTTGCCACATGCAAGAAGCTCAACTTCTCAAGGATCTGGTAATTGACAATAAATTTCCCCACATTTTGTTATCTGGACCACCTGGTTCTGGGAAAAAAGCTCTAACAATGGCTTTCTTAAGAGAGATATATGGTGATGCAAGCTGGGAAATATCTCATGATTTAAGATGCTTCCAGATTCAGGAACAAATGTCGATGCAAGTAATGGTTCCATTGACATCCAGTGCTCACCATATAGAGCTTAATGTCCGTGTTGAAGCAAATGCTAGATATGCATTGATGGGTTTAGTAAAGGAAATCAACAGTGAGAATGACATTGCTCCTGAAATCAGCACTATTAATCTCAAGGGAAATCATAAAGTGCTAGTTCTCTACGATGTTGACCGAGCAGCAGAACATATTCAGCATTTGATCAAATGGATAATGGACTGTTACTCAGAAGCTTGTAAACTCATTCTCTGCTGTGAAAATGATGAAGACATCGTTGAATCAGTGAAAAACCGGTGCACAGTTATCAAGCTTGATGCTCCTGTGACTCAAGAAATTACGGAAGTTCTTGCTCAGATAGCAAGGAAGGAAAACTTTGACCTACCTACGAACTTCGCTAATAAGATTGCTAACAAATCTAAGCAGAACCTGAGAAAAGCAATCATGGGCCTTGAAGCGACCAAAGCACACAACTATCCTTTTGTAGATAACCAACCAATTCCAATTGGATGGGAAGAGGTACTTGTTGAAGTTGCTGCAGAAATCCTAGCTGACCCATCACCAAAGAGGTTATTTTTCATCCGGGGAAAGTTTCAAAAGCTTCTTGTGGGTTTTGTACACCCGAAACTGATTCTAATGAAGCTGGTAGAACAGTTCCTTAAAGCAATGGATGGTAGTTCTAAAAGGGACCTATATTATTGGCATGCTTACTATGTAAGTTCTCTCCCTCATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 map03030 map03420 map03430
Pfam Domains
Protein Families
DNA_pol3_delta2 NmrA

Protein Analysis

784

Amino Acids

87.43

Weight (kDa)

9.73

Isoelectric Point (pI)

58.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RCF1-5-like_lid PF21960 655 - 694 9.3e-11 RCF1/5-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016238)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12990
malus_domestica MD02G1144400.v1.1 MD15G1258100.v1.1
prunus_persica Prupe.7G157200_v2.0.a1
pyrus_communis pycom15g22580
rosa_chinensis RchiOBHm_Chr2g0101071
rosa_laevigata RLG00000017049
rosa_multiflora Rmu_sc0007698.1_g000014
rosa_roxburghii Rroxscaffold_2G00141580
rosa_rugosa Rorug02G0096900
rosa_samantha Rh2AG142900 Rh2BG148000 Rh2CG149500 Rh2DG148500
rosa_wichuraiana Rw2G011260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 341
AccB7I CCANNNNNTGG 1 cut(s) 1007
AciI CCGC 1 cut(s) 1027
AclWI GGATC 2 cut(s) 745, 1452
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 2 cut(s) 1211, 1463
AcuI CTGAAG 1 cut(s) 68
AdeI CACNNNGTG 1 cut(s) 890
AfaI GTAC 4 cut(s) 331, 1180, 2139, 2235
AfiI CCNNNNNNNGG 8 cut(s) 113, 350, 599, 788, 1007, 1390, 1499, 1591
AflII CTTAAG 1 cut(s) 1528
AgeI ACCGGT 1 cut(s) 1911
AjnI CCWGG 4 cut(s) 224, 633, 886, 1492
Alw21I GWGCWC 3 cut(s) 1193, 1639, 1919
Alw26I GTCTC 2 cut(s) 80, 501
Alw44I GTGCAC 1 cut(s) 1915
AlwI GGATC 2 cut(s) 745, 1452
AlwNI CAGNNNCTG 1 cut(s) 2047
Ama87I CYCGRG 2 cut(s) 538, 1089
AoxI GGCC 5 cut(s) 115, 497, 630, 687, 2065
ApaLI GTGCAC 1 cut(s) 1915
ApeKI GCWGC 3 cut(s) 164, 1799, 2153
ApoI RAATTY 2 cut(s) 1211, 1463
ArsI GACNNNNNNTTYG 2 cut(s) 767, 799
AseI ATTAAT 1 cut(s) 1749
AsiGI ACCGGT 1 cut(s) 1911
Asp700I GAANNNNTTC 2 cut(s) 1406, 1809
AspLEI GCGC 2 cut(s) 60, 399
AspS9I GGNCC 7 cut(s) 277, 498, 631, 688, 1487, 2065, 2305
AsuC2I CCSGG 5 cut(s) 55, 275, 501, 692, 2201
AvaI CYCGRG 2 cut(s) 538, 1089
AvaII GGWCC 3 cut(s) 277, 1487, 2305
BaeGI GKGCMC 1 cut(s) 1919
BalI TGGCCA 1 cut(s) 117
BarI GAAGNNNNNNTAC 2 cut(s) 514, 546
BauI CACGAG 1 cut(s) 906
BbsI GAAGAC 2 cut(s) 56, 1893
Bbv12I GWGCWC 3 cut(s) 1193, 1639, 1919
BbvI GCAGC 3 cut(s) 151, 1811, 2140
BceAI ACGGC 2 cut(s) 91, 766
BcgI CGANNNNNNTGC 2 cut(s) 1067, 1101
BciT130I CCWGG 4 cut(s) 226, 635, 888, 1494
BclI TGATCA 2 cut(s) 457, 1821
BcnI CCSGG 5 cut(s) 55, 275, 501, 692, 2201
BcoDI GTCTC 2 cut(s) 80, 501
BfaI CTAG 6 cut(s) 98, 828, 1200, 1677, 1775, 2165
BfmI CTRYAG 3 cut(s) 165, 580, 2154
BfrI CTTAAG 1 cut(s) 1528
BfuAI ACCTGC 1 cut(s) 341
BisI GCNGC 3 cut(s) 165, 1800, 2154
BlpI GCTNAGC 2 cut(s) 393, 1144
BlsI GCNGC 3 cut(s) 166, 1801, 2155
Bme1390I CCNGG 9 cut(s) 55, 226, 275, 501, 635, 692, 888, 1494, 2201
Bme18I GGWCC 3 cut(s) 277, 1487, 2305
BmeT110I CYCGRG 2 cut(s) 538, 1089
BmgT120I GGNCC 7 cut(s) 277, 498, 631, 688, 1487, 2065, 2305
BmiI GGNNCC 3 cut(s) 690, 1620, 2306
BmrFI CCNGG 9 cut(s) 55, 226, 275, 501, 635, 692, 888, 1494, 2201
BmsI GCATC 7 cut(s) 229, 250, 442, 1537, 1568, 1596, 1924
BpiI GAAGAC 2 cut(s) 56, 1893
BplI GAGNNNNNCTC 2 cut(s) 1229, 1261
Bpu10I CCTNAGC 1 cut(s) 1299
Bpu1102I GCTNAGC 2 cut(s) 393, 1144
BpuEI CTTGAG 3 cut(s) 1424, 1739, 1932
BpuMI CCSGG 5 cut(s) 55, 275, 501, 692, 2201
BsaBI GATNNNNATC 2 cut(s) 456, 1383
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 4 cut(s) 107, 633, 690, 2200
BsaWI WCCGGW 1 cut(s) 1911
Bsc4I CCNNNNNNNGG 8 cut(s) 113, 350, 599, 788, 1007, 1390, 1499, 1591
Bse118I RCCGGY 2 cut(s) 1390, 1911
Bse1I ACTGG 1 cut(s) 1632
Bse3DI GCAATG 2 cut(s) 1725, 2289
Bse8I GATNNNNATC 2 cut(s) 456, 1383
BseBI CCWGG 4 cut(s) 226, 635, 888, 1494
BseDI CCNNGG 4 cut(s) 107, 633, 690, 2200
BseGI GGATG 6 cut(s) 728, 1357, 1628, 2132, 2196, 2293
BseJI GATNNNNATC 2 cut(s) 456, 1383
BseLI CCNNNNNNNGG 8 cut(s) 113, 350, 599, 788, 1007, 1390, 1499, 1591
BseMI GCAATG 2 cut(s) 1725, 2289
BseMII CTCAG 8 cut(s) 50, 141, 384, 1158, 1290, 1860, 1985, 2039
BseNI ACTGG 1 cut(s) 1632
BseSI GKGCMC 1 cut(s) 1919
BseXI GCAGC 3 cut(s) 151, 1811, 2140
BseYI CCCAGC 1 cut(s) 1554
Bsh1285I CGRYCG 1 cut(s) 1391
BshFI GGCC 5 cut(s) 117, 499, 632, 689, 2067
BshTI ACCGGT 1 cut(s) 1911
BsiEI CGRYCG 1 cut(s) 1391
BsiHKAI GWGCWC 3 cut(s) 1193, 1639, 1919
BsiHKCI CYCGRG 2 cut(s) 538, 1089
BsiSI CCGG 8 cut(s) 55, 211, 275, 501, 692, 1391, 1912, 2200
BslFI GGGAC 3 cut(s) 363, 1108, 2318
BslI CCNNNNNNNGG 8 cut(s) 113, 350, 599, 788, 1007, 1390, 1499, 1591
BsmAI GTCTC 2 cut(s) 80, 501
BsmFI GGGAC 3 cut(s) 363, 1108, 2318
BsmI GAATGC 3 cut(s) 970, 1090, 1303
BsnI GGCC 5 cut(s) 117, 499, 632, 689, 2067
Bso31I GGTCTC 1 cut(s) 501
BsoBI CYCGRG 2 cut(s) 538, 1089
Bsp1286I GDGCHC 3 cut(s) 1193, 1639, 1919
Bsp1407I TGTACA 1 cut(s) 2233
Bsp143I GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
Bsp1720I GCTNAGC 2 cut(s) 393, 1144
BspACI CCGC 1 cut(s) 1027
BspANI GGCC 5 cut(s) 117, 499, 632, 689, 2067
BspCNI CTCAG 8 cut(s) 49, 142, 385, 1157, 1291, 1859, 1984, 2040
BspHI TCATGA 1 cut(s) 1567
BspLI GGNNCC 3 cut(s) 690, 1620, 2306
BspMAI CTGCAG 2 cut(s) 169, 2158
BspMI ACCTGC 1 cut(s) 341
BspPI GGATC 2 cut(s) 745, 1452
BspTI CTTAAG 1 cut(s) 1528
BspTNI GGTCTC 1 cut(s) 501
BsrDI GCAATG 2 cut(s) 1725, 2289
BsrFI RCCGGY 2 cut(s) 1390, 1911
BsrGI TGTACA 1 cut(s) 2233
BsrI ACTGG 1 cut(s) 1632
BssAI RCCGGY 2 cut(s) 1390, 1911
BssECI CCNNGG 4 cut(s) 107, 633, 690, 2200
BssMI GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
BssSI CACGAG 1 cut(s) 906
Bst2BI CACGAG 1 cut(s) 906
Bst2UI CCWGG 4 cut(s) 226, 635, 888, 1494
Bst4CI ACNGT 8 cut(s) 334, 940, 982, 1251, 1715, 1841, 1921, 2271
Bst6I CTCTTC 3 cut(s) 313, 397, 2127
BstAFI CTTAAG 1 cut(s) 1528
BstAPI GCANNNNNTGC 1 cut(s) 824
BstAUI TGTACA 1 cut(s) 2233
BstC8I GCNNGC 5 cut(s) 219, 825, 1157, 1552, 2322
BstDSI CCRYGG 1 cut(s) 107
BstEII GGTNACC 1 cut(s) 1054
BstF5I GGATG 6 cut(s) 728, 1357, 1628, 2132, 2196, 2293
BstHHI GCGC 2 cut(s) 60, 399
BstKTI GATC 9 cut(s) 132, 460, 527, 557, 753, 798, 1081, 1447, 1824
BstMAI GTCTC 2 cut(s) 80, 501
BstMBI GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
BstMCI CGRYCG 1 cut(s) 1391
BstMWI GCNNNNNNNGC 6 cut(s) 248, 824, 1161, 1682, 1976, 2081
BstNI CCWGG 4 cut(s) 226, 635, 888, 1494
BstNSI RCATGY 2 cut(s) 1423, 2324
BstPI GGTNACC 1 cut(s) 1054
BstSCI CCNGG 9 cut(s) 53, 224, 273, 499, 633, 690, 886, 1492, 2199
BstSFI CTRYAG 3 cut(s) 165, 580, 2154
BstSLI GKGCMC 1 cut(s) 1919
BstV1I GCAGC 3 cut(s) 151, 1811, 2140
BstV2I GAAGAC 2 cut(s) 56, 1893
BstX2I RGATCY 1 cut(s) 1444
BstXI CCANNNNNNTGG 1 cut(s) 2127
BstYI RGATCY 1 cut(s) 1444
BsuRI GGCC 5 cut(s) 117, 499, 632, 689, 2067
BtgI CCRYGG 1 cut(s) 107
BtsCI GGATG 6 cut(s) 728, 1357, 1628, 2132, 2196, 2293
BtsI GCAGTG 3 cut(s) 67, 926, 968
BtsIMutI CAGTG 9 cut(s) 44, 67, 139, 926, 968, 1247, 1639, 1720, 1908
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 5 cut(s) 219, 825, 1157, 1552, 2322
CaiI CAGNNNCTG 1 cut(s) 2047
CciI TCATGA 1 cut(s) 1567
CfoI GCGC 2 cut(s) 60, 399
Cfr10I RCCGGY 2 cut(s) 1390, 1911
Cfr13I GGNCC 7 cut(s) 277, 498, 631, 688, 1487, 2065, 2305
CpoI CGGWCCG 1 cut(s) 277
CsiI ACCWGGT 2 cut(s) 886, 1492
Csp6I GTAC 4 cut(s) 330, 1179, 2138, 2234
CspAI ACCGGT 1 cut(s) 1911
CspI CGGWCCG 1 cut(s) 277
CviAII CATG 6 cut(s) 113, 440, 1420, 1568, 2062, 2321
CviQI GTAC 4 cut(s) 330, 1179, 2138, 2234
DpnI GATC 9 cut(s) 131, 459, 526, 556, 752, 797, 1080, 1446, 1823
DpnII GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
DraIII CACNNNGTG 1 cut(s) 890
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 3 cut(s) 313, 397, 2127
EarI CTCTTC 3 cut(s) 313, 397, 2127
Eco31I GGTCTC 1 cut(s) 501
Eco32I GATATC 1 cut(s) 895
Eco47I GGWCC 3 cut(s) 277, 1487, 2305
Eco57I CTGAAG 1 cut(s) 68
Eco88I CYCGRG 2 cut(s) 538, 1089
Eco91I GGTNACC 1 cut(s) 1054
EcoO109I RGGNCCY 3 cut(s) 631, 688, 2305
EcoO65I GGTNACC 1 cut(s) 1054
EcoRII CCWGG 4 cut(s) 224, 633, 886, 1492
EcoRV GATATC 1 cut(s) 895
EcoT22I ATGCAT 1 cut(s) 1687
FaeI CATG 6 cut(s) 116, 443, 1423, 1571, 2065, 2324
FalI AAGNNNNNCTT 8 cut(s) 394, 426, 1419, 1451, 1976, 2008, 2124, 2156
FaqI GGGAC 3 cut(s) 363, 1108, 2318
FatI CATG 6 cut(s) 112, 439, 1419, 1567, 2061, 2320
FbaI TGATCA 2 cut(s) 457, 1821
Fnu4HI GCNGC 3 cut(s) 165, 1800, 2154
FokI GGATG 6 cut(s) 715, 1364, 1615, 2139, 2183, 2300
Fsp4HI GCNGC 3 cut(s) 165, 1800, 2154
FspBI CTAG 6 cut(s) 98, 828, 1200, 1677, 1775, 2165
GlaI GCGC 2 cut(s) 59, 398
GluI GCNGC 3 cut(s) 165, 1800, 2154
GsaI CCCAGC 1 cut(s) 1558
HaeIII GGCC 5 cut(s) 117, 499, 632, 689, 2067
HapII CCGG 8 cut(s) 55, 211, 275, 501, 692, 1391, 1912, 2200
HhaI GCGC 2 cut(s) 60, 399
Hin1II CATG 6 cut(s) 116, 443, 1423, 1571, 2065, 2324
Hin6I GCGC 2 cut(s) 58, 397
HinP1I GCGC 2 cut(s) 58, 397
HincII GTYRAC 1 cut(s) 1792
HindII GTYRAC 1 cut(s) 1792
HindIII AAGCTT 5 cut(s) 821, 1323, 1851, 1928, 2216
HpaII CCGG 8 cut(s) 55, 211, 275, 501, 692, 1391, 1912, 2200
Hpy166II GTNNAC 6 cut(s) 341, 469, 1792, 1859, 1917, 2236
Hpy188III TCNNGA 7 cut(s) 908, 1485, 1568, 1585, 1592, 1733, 1949
Hpy8I GTNNAC 6 cut(s) 341, 469, 1792, 1859, 1917, 2236
HpyAV CCTTC 4 cut(s) 428, 489, 1333, 1978
HpyCH4III ACNGT 8 cut(s) 334, 940, 982, 1251, 1715, 1841, 1921, 2271
HpyF10VI GCNNNNNNNGC 6 cut(s) 248, 824, 1161, 1682, 1976, 2081
Hsp92II CATG 6 cut(s) 116, 443, 1423, 1571, 2065, 2324
HspAI GCGC 2 cut(s) 58, 397
Ksp22I TGATCA 2 cut(s) 457, 1821
Kzo9I GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
LmnI GCTCC 3 cut(s) 1188, 1735, 1942
Lsp1109I GCAGC 3 cut(s) 151, 1811, 2140
LweI GCATC 7 cut(s) 229, 250, 442, 1537, 1568, 1596, 1924
MabI ACCWGGT 2 cut(s) 886, 1492
MaeI CTAG 6 cut(s) 98, 828, 1200, 1677, 1775, 2165
MaeIII GTNAC 7 cut(s) 154, 300, 1054, 1116, 1241, 1841, 1942
MalI GATC 9 cut(s) 131, 459, 526, 556, 752, 797, 1080, 1446, 1823
MboI GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
MfeI CAATTG 1 cut(s) 2121
MflI RGATCY 1 cut(s) 1444
MhlI GDGCHC 3 cut(s) 1193, 1639, 1919
MlsI TGGCCA 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 4 cut(s) 884, 1090, 1249, 1939
MmeI TCCRAC 2 cut(s) 153, 1262
Mox20I TGGCCA 1 cut(s) 117
Mph1103I ATGCAT 1 cut(s) 1687
MroXI GAANNNNTTC 2 cut(s) 1406, 1809
MscI TGGCCA 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 117
MspCI CTTAAG 1 cut(s) 1528
MspI CCGG 8 cut(s) 55, 211, 275, 501, 692, 1391, 1912, 2200
MspR9I CCNGG 9 cut(s) 55, 226, 275, 501, 635, 692, 888, 1494, 2201
MunI CAATTG 1 cut(s) 2121
Mva1269I GAATGC 3 cut(s) 970, 1090, 1303
MvaI CCWGG 4 cut(s) 226, 635, 888, 1494
MwoI GCNNNNNNNGC 6 cut(s) 248, 824, 1161, 1682, 1976, 2081
NciI CCSGG 5 cut(s) 55, 275, 501, 692, 2201
NdeII GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
NlaIII CATG 6 cut(s) 116, 443, 1423, 1571, 2065, 2324
NlaIV GGNNCC 3 cut(s) 690, 1620, 2306
NmuCI GTSAC 5 cut(s) 154, 300, 1116, 1241, 1942
NsiI ATGCAT 1 cut(s) 1687
NspI RCATGY 2 cut(s) 1423, 2324
PaeI GCATGC 1 cut(s) 2324
PaeR7I CTCGAG 1 cut(s) 1089
PagI TCATGA 1 cut(s) 1567
PaqCI CACCTGC 1 cut(s) 341
PctI GAATGC 3 cut(s) 970, 1090, 1303
PdmI GAANNNNTTC 2 cut(s) 1406, 1809
PfeI GAWTC 6 cut(s) 7, 146, 1407, 1588, 1898, 2248
PflMI CCANNNNNTGG 1 cut(s) 1007
PinAI ACCGGT 1 cut(s) 1911
PkrI GCNGC 3 cut(s) 166, 1801, 2155
PleI GAGTC 4 cut(s) 883, 1090, 1248, 1939
PpsI GAGTC 4 cut(s) 883, 1090, 1248, 1939
PpuMI RGGWCCY 1 cut(s) 2305
PshBI ATTAAT 1 cut(s) 1749
Psp5II RGGWCCY 1 cut(s) 2305
Psp6I CCWGG 4 cut(s) 224, 633, 886, 1492
PspEI GGTNACC 1 cut(s) 1054
PspFI CCCAGC 1 cut(s) 1554
PspGI CCWGG 4 cut(s) 224, 633, 886, 1492
PspN4I GGNNCC 3 cut(s) 690, 1620, 2306
PspPI GGNCC 7 cut(s) 277, 498, 631, 688, 1487, 2065, 2305
PspPPI RGGWCCY 1 cut(s) 2305
PspXI VCTCGAGB 1 cut(s) 1089
PsrI GAACNNNNNNTAC 2 cut(s) 322, 354
PstI CTGCAG 2 cut(s) 169, 2158
PstNI CAGNNNCTG 1 cut(s) 2047
PsuI RGATCY 1 cut(s) 1444
RsaI GTAC 4 cut(s) 331, 1180, 2139, 2235
RsaNI GTAC 4 cut(s) 330, 1179, 2138, 2234
Rsr2I CGGWCCG 1 cut(s) 277
RsrII CGGWCCG 1 cut(s) 277
SatI GCNGC 3 cut(s) 165, 1800, 2154
Sau3AI GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
Sau96I GGNCC 7 cut(s) 277, 498, 631, 688, 1487, 2065, 2305
SchI GAGTC 4 cut(s) 884, 1090, 1249, 1939
ScrFI CCNGG 9 cut(s) 55, 226, 275, 501, 635, 692, 888, 1494, 2201
SduI GDGCHC 3 cut(s) 1193, 1639, 1919
SexAI ACCWGGT 2 cut(s) 886, 1492
SfaNI GCATC 7 cut(s) 229, 250, 442, 1537, 1568, 1596, 1924
SfcI CTRYAG 3 cut(s) 165, 580, 2154
Sfr274I CTCGAG 1 cut(s) 1089
SinI GGWCC 3 cut(s) 277, 1487, 2305
SlaI CTCGAG 1 cut(s) 1089
SmlI CTYRAG 5 cut(s) 1089, 1439, 1528, 1754, 1947
SmoI CTYRAG 5 cut(s) 1089, 1439, 1528, 1754, 1947
SphI GCATGC 1 cut(s) 2324
SsiI CCGC 1 cut(s) 1027
SspMI CTAG 6 cut(s) 98, 828, 1200, 1677, 1775, 2165
StyD4I CCNGG 9 cut(s) 53, 224, 273, 499, 633, 690, 886, 1492, 2199
TaaI ACNGT 8 cut(s) 334, 940, 982, 1251, 1715, 1841, 1921, 2271
TaqI TCGA 5 cut(s) 547, 1077, 1090, 1387, 1604
TaqII GACCGA 1 cut(s) 1809
TatI WGTACW 1 cut(s) 2233
TfiI GAWTC 6 cut(s) 7, 146, 1407, 1588, 1898, 2248
TscAI CASTG 9 cut(s) 51, 67, 139, 933, 975, 1254, 1639, 1720, 1908
TseFI GTSAC 5 cut(s) 154, 300, 1116, 1241, 1942
TseI GCWGC 3 cut(s) 164, 1799, 2153
Tsp45I GTSAC 5 cut(s) 154, 300, 1116, 1241, 1942
TspDTI ATGAA 7 cut(s) 84, 1317, 1335, 1368, 1899, 2185, 2270
TspGWI ACGGA 2 cut(s) 1649, 1973
TspRI CASTG 9 cut(s) 51, 67, 139, 933, 975, 1254, 1639, 1720, 1908
Van91I CCANNNNNTGG 1 cut(s) 1007
Vha464I CTTAAG 1 cut(s) 1528
VneI GTGCAC 1 cut(s) 1915
VpaK11BI GGWCC 3 cut(s) 277, 1487, 2305
VspI ATTAAT 1 cut(s) 1749
XapI RAATTY 2 cut(s) 1211, 1463
XceI RCATGY 2 cut(s) 1423, 2324
XhoI CTCGAG 1 cut(s) 1089
XmnI GAANNNNTTC 2 cut(s) 1406, 1809
XspI CTAG 6 cut(s) 98, 828, 1200, 1677, 1775, 2165
Zsp2I ATGCAT 1 cut(s) 1687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.