FvH4_1g13170

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010518
Physical Location & Seq
Reverse (-)
7238270 .. 7242282
4013 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13170.t4

Sequence Viewer

Length: 822 bp
ATGTTACAGCAAGATCCAAACCTGTCACCAGCTGCCGTCTGCACCACCCCAAGAGCAACAAGCAGCACTCCAAGAGGAGCAAACCACAGCTTCAAAGCAGCACCATCGGCGGCACAGGCACAAGTACCAGTACCTGAGCCAGTTCCAGCTTCGAAAGCAGTAAGATATCGAGAATGCTTGAAGAATCACGCAGCGACCACCGGAGGGCATGTACTCGATGGCTGCGGAGAGTTCATGCCAAGCGGAGAAGAAGACAGCCCGGGAGGACTAAAATGTGCAGCTTGTGACTGCCACAGGAATTTTCACAGGAAAGAGATCGAGGGTGAAACTCAATTAGTACATGTCCCCAATAATTACCATGTCCTTAACCACCCGAACAAAAACAGCCATAGCAGCCGTAGAAATGCATCATCAGCACCTGTTGTTCCCTCACTCCCTGCACCACCTCCTGTTCATCATCACCACCAGTACCATCATTTCCCGGCCACTAGTCCTAACGTGGCGGGATCATTTCCTCCTGGGTCGATGATGACTTTTGGAGGTGGCGGAGGTGCAGCCGAGTCATCTAGCGAGGATCTCAACCACATGAACATGTACGATCAGTCCAATCAGGCCGGGAGTTCGAGGAAGCGGTTTCGGACAAAGTTTAGTCAAGAGCAGAAGGACAAGATGATGGAGGTGGCTGAGAAGTTGGGATGGAGGATCCAGAAGCACGACGAGCACGAGGTGCAGCAGTTGTGTTCTGAATTGGGTGTAAAGAGACAGGTTTTCAAGGTGTGGATGCACAATAATAAACAAGCCATGAAGAAGAAGCAACTGTAA

Protein Analysis

274

Amino Acids

29.97

Weight (kDa)

9.06

Isoelectric Point (pI)

74.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 139 - 191 1.5e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 110, 225, 243, 503, 546, 631
AclWI GGATC 5 cut(s) 8, 514, 582, 697, 710
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 1 cut(s) 298
AdeI CACNNNGTG 1 cut(s) 727
AfaI GTAC 6 cut(s) 126, 132, 213, 339, 470, 596
AfiI CCNNNNNNNGG 1 cut(s) 204
AflIII ACRYGT 2 cut(s) 340, 591
AgsI TTSAA 3 cut(s) 94, 181, 772
AhlI ACTAGT 1 cut(s) 488
AjnI CCWGG 1 cut(s) 517
AluBI AGCT 4 cut(s) 32, 90, 149, 281
AluI AGCT 4 cut(s) 32, 90, 149, 281
Alw21I GWGCWC 1 cut(s) 723
Alw26I GTCTC 1 cut(s) 754
AlwI GGATC 5 cut(s) 8, 514, 582, 697, 710
AlwNI CAGNNNCTG 2 cut(s) 134, 419
Ama87I CYCGRG 1 cut(s) 259
AoxI GGCC 2 cut(s) 483, 612
ApeKI GCWGC 9 cut(s) 32, 63, 98, 191, 222, 278, 393, 554, 730
ApoI RAATTY 1 cut(s) 298
AsuC2I CCSGG 4 cut(s) 260, 261, 482, 616
AsuHPI GGTGA 3 cut(s) 18, 335, 452
AsuII TTCGAA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 259
BamHI GGATCC 1 cut(s) 702
BauI CACGAG 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 723
BbvI GCAGC 9 cut(s) 19, 75, 110, 203, 209, 290, 405, 566, 742
BccI CCATC 5 cut(s) 112, 212, 480, 667, 690
BceAI ACGGC 2 cut(s) 20, 381
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BciT130I CCWGG 1 cut(s) 519
BcnI CCSGG 4 cut(s) 260, 261, 482, 616
BcoDI GTCTC 1 cut(s) 754
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 2 cut(s) 489, 567
Bme1390I CCNGG 5 cut(s) 260, 261, 482, 519, 616
BmeT110I CYCGRG 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 704
BmrFI CCNGG 5 cut(s) 260, 261, 482, 519, 616
BmsI GCATC 2 cut(s) 416, 771
BpiI GAAGAC 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 152
BpuMI CCSGG 4 cut(s) 260, 261, 482, 616
BsaJI CCNNGG 2 cut(s) 259, 518
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse1I ACTGG 3 cut(s) 128, 140, 466
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 2 cut(s) 259, 518
BseGI GGATG 2 cut(s) 701, 786
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 2 cut(s) 126, 675
BseNI ACTGG 3 cut(s) 128, 140, 466
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 9 cut(s) 19, 75, 110, 203, 209, 290, 405, 566, 742
BsgI GTGCAG 5 cut(s) 25, 297, 423, 573, 749
BshFI GGCC 2 cut(s) 485, 614
BsiHKAI GWGCWC 1 cut(s) 723
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 4 cut(s) 201, 260, 482, 615
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 754
BsmFI GGGAC 1 cut(s) 329
BsmI GAATGC 1 cut(s) 179
BsnI GGCC 2 cut(s) 485, 614
BsoBI CYCGRG 1 cut(s) 259
Bsp119I TTCGAA 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 723
Bsp143I GATC 6 cut(s) 13, 315, 506, 574, 598, 702
BspACI CCGC 6 cut(s) 110, 225, 243, 503, 546, 631
BspANI GGCC 2 cut(s) 485, 614
BspCNI CTCAG 2 cut(s) 127, 676
BspLI GGNNCC 1 cut(s) 704
BspPI GGATC 5 cut(s) 8, 514, 582, 697, 710
BspT104I TTCGAA 1 cut(s) 152
BsrI ACTGG 3 cut(s) 128, 140, 466
BssECI CCNNGG 2 cut(s) 259, 518
BssMI GATC 6 cut(s) 13, 315, 506, 574, 598, 702
BssSI CACGAG 1 cut(s) 722
Bst2BI CACGAG 1 cut(s) 722
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 1 cut(s) 819
BstAPI GCANNNNNTGC 1 cut(s) 727
BstBI TTCGAA 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 135, 684
BstF5I GGATG 2 cut(s) 701, 786
BstKTI GATC 6 cut(s) 16, 318, 509, 577, 601, 705
BstMAI GTCTC 1 cut(s) 754
BstMBI GATC 6 cut(s) 13, 315, 506, 574, 598, 702
BstMWI GCNNNNNNNGC 7 cut(s) 107, 116, 155, 393, 413, 718, 727
BstNI CCWGG 1 cut(s) 519
BstNSI RCATGY 3 cut(s) 212, 344, 595
BstSCI CCNGG 5 cut(s) 258, 259, 480, 517, 614
BstV1I GCAGC 9 cut(s) 19, 75, 110, 203, 209, 290, 405, 566, 742
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 3 cut(s) 13, 574, 702
BstYI RGATCY 3 cut(s) 13, 574, 702
BsuRI GGCC 2 cut(s) 485, 614
BtsCI GGATG 2 cut(s) 701, 786
CaiI CAGNNNCTG 2 cut(s) 134, 419
Cfr9I CCCGGG 1 cut(s) 259
Csp6I GTAC 6 cut(s) 125, 131, 212, 338, 469, 595
CviAII CATG 7 cut(s) 209, 235, 341, 359, 586, 592, 802
CviQI GTAC 6 cut(s) 125, 131, 212, 338, 469, 595
DdeI CTNAG 2 cut(s) 135, 684
DpnI GATC 6 cut(s) 15, 317, 508, 576, 600, 704
DpnII GATC 6 cut(s) 13, 315, 506, 574, 598, 702
DraIII CACNNNGTG 1 cut(s) 727
EaeI YGGCCR 1 cut(s) 483
EciI GGCGGA 1 cut(s) 561
Eco32I GATATC 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 517
EcoRV GATATC 1 cut(s) 167
EcoT22I ATGCAT 1 cut(s) 409
FaeI CATG 7 cut(s) 212, 238, 344, 362, 589, 595, 805
FaiI YATR 8 cut(s) 210, 236, 342, 360, 390, 587, 593, 803
FaqI GGGAC 1 cut(s) 329
FatI CATG 7 cut(s) 208, 234, 340, 358, 585, 591, 801
FauI CCCGC 1 cut(s) 496
FokI GGATG 2 cut(s) 708, 793
FspBI CTAG 2 cut(s) 489, 567
HaeIII GGCC 2 cut(s) 485, 614
HapII CCGG 4 cut(s) 201, 260, 482, 615
Hin1II CATG 7 cut(s) 212, 238, 344, 362, 589, 595, 805
HinfI GANTC 2 cut(s) 184, 560
HpaII CCGG 4 cut(s) 201, 260, 482, 615
HphI GGTGA 3 cut(s) 18, 335, 452
Hpy188I TCNGA 2 cut(s) 639, 745
Hpy188III TCNNGA 3 cut(s) 170, 653, 706
Hpy99I CGWCG 1 cut(s) 719
HpyAV CCTTC 1 cut(s) 655
HpyCH4III ACNGT 1 cut(s) 819
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 7 cut(s) 42, 278, 407, 440, 554, 730, 784
HpyF10VI GCNNNNNNNGC 7 cut(s) 107, 116, 155, 393, 413, 718, 727
HpyF3I CTNAG 2 cut(s) 135, 684
HpySE526I ACGT 1 cut(s) 498
Hsp92II CATG 7 cut(s) 212, 238, 344, 362, 589, 595, 805
Kzo9I GATC 6 cut(s) 13, 315, 506, 574, 598, 702
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 9 cut(s) 19, 75, 110, 203, 209, 290, 405, 566, 742
LweI GCATC 2 cut(s) 416, 771
MaeI CTAG 2 cut(s) 489, 567
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 3 cut(s) 3, 24, 284
MalI GATC 6 cut(s) 15, 317, 508, 576, 600, 704
MboI GATC 6 cut(s) 13, 315, 506, 574, 598, 702
MboII GAAGA 5 cut(s) 193, 260, 263, 817, 820
MflI RGATCY 3 cut(s) 13, 574, 702
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 4 cut(s) 298, 332, 352, 746
MlyI GAGTC 1 cut(s) 569
Mph1103I ATGCAT 1 cut(s) 409
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 590
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 4 cut(s) 201, 260, 482, 615
MspR9I CCNGG 5 cut(s) 260, 261, 482, 519, 616
Mva1269I GAATGC 1 cut(s) 179
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 7 cut(s) 107, 116, 155, 393, 413, 718, 727
NciI CCSGG 4 cut(s) 260, 261, 482, 616
NdeII GATC 6 cut(s) 13, 315, 506, 574, 598, 702
NlaIII CATG 7 cut(s) 212, 238, 344, 362, 589, 595, 805
NlaIV GGNNCC 1 cut(s) 704
NmeAIII GCCGAG 1 cut(s) 583
NmuCI GTSAC 2 cut(s) 24, 284
NsiI ATGCAT 1 cut(s) 409
NspI RCATGY 3 cut(s) 212, 344, 595
NspV TTCGAA 1 cut(s) 152
PciI ACATGT 2 cut(s) 340, 591
PcsI WCGNNNNNNNCGW 1 cut(s) 720
PctI GAATGC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 184
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PscI ACATGT 2 cut(s) 340, 591
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 1 cut(s) 704
PstNI CAGNNNCTG 2 cut(s) 134, 419
PsuI RGATCY 3 cut(s) 13, 574, 702
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 6 cut(s) 126, 132, 213, 339, 470, 596
RsaNI GTAC 6 cut(s) 125, 131, 212, 338, 469, 595
RseI CAYNNNNRTG 1 cut(s) 590
SaqAI TTAA 1 cut(s) 366
Sau3AI GATC 6 cut(s) 13, 315, 506, 574, 598, 702
SchI GAGTC 1 cut(s) 569
ScrFI CCNGG 5 cut(s) 260, 261, 482, 519, 616
SduI GDGCHC 1 cut(s) 723
SfaNI GCATC 2 cut(s) 416, 771
SfuI TTCGAA 1 cut(s) 152
SmaI CCCGGG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 590
SpeI ACTAGT 1 cut(s) 488
Sse9I AATT 4 cut(s) 298, 332, 352, 746
SsiI CCGC 6 cut(s) 110, 225, 243, 503, 546, 631
SspMI CTAG 2 cut(s) 489, 567
StyD4I CCNGG 5 cut(s) 258, 259, 480, 517, 614
TaaI ACNGT 1 cut(s) 819
TaiI ACGT 1 cut(s) 501
TaqI TCGA 6 cut(s) 152, 169, 216, 318, 524, 623
TasI AATT 4 cut(s) 298, 332, 352, 746
TatI WGTACW 2 cut(s) 211, 337
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TseFI GTSAC 2 cut(s) 24, 284
TseI GCWGC 9 cut(s) 32, 63, 98, 191, 222, 278, 393, 554, 730
Tsp45I GTSAC 2 cut(s) 24, 284
TspDTI ATGAA 4 cut(s) 223, 443, 602, 818
TspMI CCCGGG 1 cut(s) 259
XapI RAATTY 1 cut(s) 298
XceI RCATGY 3 cut(s) 212, 344, 595
XmaI CCCGGG 1 cut(s) 259
XspI CTAG 2 cut(s) 489, 567
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.