Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010518

Physical Location & Seq

Genomic Coordinates Forward (+)

16468637 .. 16471495

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G155700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGGTGAGAGGCCAAGATAAGGTAATAGGGATGCCAACCACTCTGGGCTATAATCCCCCCAATAGGGACTCTTCTTCCTCCAAGCTCTCTTCTTCTCCAGCCCTACCCTCAACTGCTAACAACATAATCTTCATCAACCCTCTTCAAACCCTAGACCCCCATCCTTCTCCTCATCGTCACCAGCCTCATCAATTGAATCTATCACCACACAAATCATCAAGAAGAGATTCTGAGCAAAACCCAGATCCAATCTCATCTCCAATTGTTGTCACCCCAAGTGCAACAACAACAACAGCAACATCAATTCCCGGTGGATCAAATTTCAAAGCACCACCAGCTCAACCACCACCACCACAGAAAGTTAGATATAGGGAATGCTTGAGAAACCACGCGGCCAGCAGCGGCGGCCACGTGCTCGATGGCTGCGGAGAATTCATGCCAAGTGGAGAGGAAGACATCCCAGAAGCACTAAAATGTGCAGCTTGTGAGTGCCATAGAAATTTCCACAGAAAAGAGATCGAAGGCGATCATTTGCCAAATAATTACTATGTTGTTAACCACCAAAAACACACCATTAGCCGTAGAGATTCAGAAACTAGAGTATTTCAACTCCCTCCACCCCCACTGCCTCCTGTTCATCATTCAGCTGCGGGGGGCCCAGTTCCCCAGACGATGATGGCGTTTGGAGGCCGTGGTGGGGGCGGAGGGGGGGCTGATGAGTCCTCGAGCGAGGATCTCAACATGAATAATTTGTTTCGGGCAACTTATGCGGCAGGCCAGCAGGCAGCGGGGTCAAAGAAGCGGTTTAGGACGAAGTTCAGTCAGGAGCAGAAGGAGAAGATGATGGAGGTTGCTGAGAAGTTAGGGTGGAAGATCCAGAGGCATGATGAGCAAGAGGTGCAGAAGTTGTGTTCTGAAGTGGGTATAAAGAGGCAGGTGTTCAAGGTGTGGATGCACAATAATAAACAAGCCATGAAGAAGAAGCAAATGGTAAAAGATGTAAAAGGAAGAAAAAGGAAAGCAAAAGAGGAAATGAGATGTCAGCTTTTTTGTCGTGGTGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

357

Amino Acids

39.47

Weight (kDa)

9.51

Isoelectric Point (pI)

70.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13170 FvH4_1g13170 FvH4_1g13170 FvH4_1g13170
malus_domestica	MD02G1146300.v1.1 MD15G1260600.v1.1
prunus_persica	Prupe.7G155700_v2.0.a1 Prupe.7G155700_v2.0.a1 Prupe.7G155700_v2.0.a1
pyrus_communis	pycom02g11590
rosa_chinensis	RchiOBHm_Chr2g0101391
rosa_laevigata	RLG00000017074
rosa_multiflora	Rmu_sc0006128.1_g000009
rosa_roxburghii	Rroxscaffold_2G00141340
rosa_rugosa	Rorug02G0098600 Rorug02G0098700
rosa_samantha	Rh2AG146500 Rh2BG151800 Rh2CG152500 Rh2DG151900
rosa_wichuraiana	Rw2G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	928
Acc36I	ACCTGC	1 cut(s)	928
AccII	CGCG	1 cut(s)	395
AciI	CCGC	9 cut(s)	395, 405, 408, 429, 653, 705, 773, 791, 805
AclWI	GGATC	4 cut(s)	242, 325, 744, 871
AcoI	YGGCCR	2 cut(s)	396, 409
AcsI	RAATTY	3 cut(s)	322, 434, 502
AcuI	CTGAAG	1 cut(s)	939
AcvI	CACGTG	1 cut(s)	415
AfiI	CCNNNNNNNGG	4 cut(s)	22, 66, 67, 700
AgsI	TTSAA	5 cut(s)	149, 199, 328, 611, 946
AluBI	AGCT	5 cut(s)	88, 341, 485, 650, 1048
AluI	AGCT	5 cut(s)	88, 341, 485, 650, 1048
Alw21I	GWGCWC	1 cut(s)	420
AlwI	GGATC	4 cut(s)	242, 325, 744, 871
Ama87I	CYCGRG	1 cut(s)	727
AoxI	GGCC	6 cut(s)	13, 396, 409, 658, 691, 778
ApaI	GGGCCC	1 cut(s)	662
ApeKI	GCWGC	5 cut(s)	402, 426, 482, 650, 788
ApoI	RAATTY	3 cut(s)	322, 434, 502
Asp700I	GAANNNNTTC	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	658, 659
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	4 cut(s)	19, 173, 198, 265
AvaI	CYCGRG	1 cut(s)	727
BaeGI	GKGCMC	1 cut(s)	662
BanII	GRGCYC	1 cut(s)	662
BbrPI	CACGTG	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	5 cut(s)	413, 414, 494, 637, 800
BccI	CCATC	4 cut(s)	171, 416, 673, 841
BceAI	ACGGC	2 cut(s)	567, 678
BcnI	CCSGG	1 cut(s)	312
BfaI	CTAG	2 cut(s)	155, 600
BfuAI	ACCTGC	1 cut(s)	928
BisI	GCNGC	9 cut(s)	396, 403, 406, 409, 427, 483, 651, 774, 789
BlsI	GCNGC	9 cut(s)	397, 404, 407, 410, 428, 484, 652, 775, 790
Bme1390I	CCNGG	1 cut(s)	312
BmeT110I	CYCGRG	1 cut(s)	727
BmgT120I	GGNCC	2 cut(s)	658, 659
BmiI	GGNNCC	2 cut(s)	659, 660
BmrFI	CCNGG	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	656
BmsI	GCATC	2 cut(s)	24, 945
BmuI	ACTGGG	1 cut(s)	656
BpiI	GAAGAC	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	403
BpuMI	CCSGG	1 cut(s)	312
BsaAI	YACGTR	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 66, 67, 700
Bse1I	ACTGG	1 cut(s)	662
BseDI	CCNNGG	1 cut(s)	694
BseGI	GGATG	4 cut(s)	39, 163, 459, 960
BseLI	CCNNNNNNNGG	4 cut(s)	22, 66, 67, 700
BseMII	CTCAG	2 cut(s)	225, 849
BseNI	ACTGG	1 cut(s)	662
BseRI	GAGGAG	1 cut(s)	162
BseSI	GKGCMC	1 cut(s)	662
BseXI	GCAGC	5 cut(s)	413, 414, 494, 637, 800
BsgI	GTGCAG	2 cut(s)	501, 923
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	6 cut(s)	15, 398, 411, 660, 693, 780
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	727
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	4 cut(s)	22, 66, 67, 700
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	6 cut(s)	15, 398, 411, 660, 693, 780
BsoBI	CYCGRG	1 cut(s)	727
Bsp120I	GGGCCC	1 cut(s)	658
Bsp1286I	GDGCHC	2 cut(s)	420, 662
Bsp143I	GATC	6 cut(s)	247, 317, 519, 529, 736, 876
BspACI	CCGC	9 cut(s)	395, 405, 408, 429, 653, 705, 773, 791, 805
BspANI	GGCC	6 cut(s)	15, 398, 411, 660, 693, 780
BspCNI	CTCAG	2 cut(s)	226, 850
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	659, 660
BspMI	ACCTGC	1 cut(s)	928
BspPI	GGATC	4 cut(s)	242, 325, 744, 871
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	1 cut(s)	694
BssMI	GATC	6 cut(s)	247, 317, 519, 529, 736, 876
Bst6I	CTCTTC	4 cut(s)	79, 97, 150, 220
BstAPI	GCANNNNNTGC	2 cut(s)	770, 901
BstBAI	YACGTR	1 cut(s)	415
BstC8I	GCNNGC	4 cut(s)	400, 778, 782, 786
BstDEI	CTNAG	2 cut(s)	234, 858
BstDSI	CCRYGG	1 cut(s)	694
BstF5I	GGATG	4 cut(s)	39, 163, 459, 960
BstFNI	CGCG	1 cut(s)	395
BstKTI	GATC	6 cut(s)	250, 320, 522, 532, 739, 879
BstMBI	GATC	6 cut(s)	247, 317, 519, 529, 736, 876
BstMWI	GCNNNNNNNGC	5 cut(s)	338, 408, 770, 892, 901
BstSCI	CCNGG	1 cut(s)	310
BstSLI	GKGCMC	1 cut(s)	662
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	5 cut(s)	413, 414, 494, 637, 800
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	3 cut(s)	247, 736, 876
BstYI	RGATCY	3 cut(s)	247, 736, 876
BsuRI	GGCC	6 cut(s)	15, 398, 411, 660, 693, 780
BtgI	CCRYGG	1 cut(s)	694
BtsCI	GGATG	4 cut(s)	39, 163, 459, 960
BtsI	GCAGTG	1 cut(s)	626
BtsIMutI	CAGTG	1 cut(s)	626
BveI	ACCTGC	1 cut(s)	928
Cac8I	GCNNGC	4 cut(s)	400, 778, 782, 786
Cfr13I	GGNCC	2 cut(s)	658, 659
CviAII	CATG	4 cut(s)	439, 745, 887, 976
DdeI	CTNAG	2 cut(s)	234, 858
DpnI	GATC	6 cut(s)	249, 319, 521, 531, 738, 878
DpnII	GATC	6 cut(s)	247, 317, 519, 529, 736, 876
EaeI	YGGCCR	2 cut(s)	396, 409
Eam1104I	CTCTTC	4 cut(s)	79, 97, 150, 220
EarI	CTCTTC	4 cut(s)	79, 97, 150, 220
EciI	GGCGGA	1 cut(s)	720
Eco24I	GRGCYC	1 cut(s)	662
Eco57I	CTGAAG	1 cut(s)	939
Eco72I	CACGTG	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	727
EcoO109I	RGGNCCY	1 cut(s)	658
EcoRI	GAATTC	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	662
FaeI	CATG	4 cut(s)	442, 748, 890, 979
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	4 cut(s)	438, 744, 886, 975
FauI	CCCGC	2 cut(s)	646, 784
Fnu4HI	GCNGC	9 cut(s)	396, 403, 406, 409, 427, 483, 651, 774, 789
FokI	GGATG	4 cut(s)	46, 150, 446, 967
FriOI	GRGCYC	1 cut(s)	662
Fsp4HI	GCNGC	9 cut(s)	396, 403, 406, 409, 427, 483, 651, 774, 789
FspBI	CTAG	2 cut(s)	155, 600
GluI	GCNGC	9 cut(s)	396, 403, 406, 409, 427, 483, 651, 774, 789
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	6 cut(s)	15, 398, 411, 660, 693, 780
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	4 cut(s)	442, 748, 890, 979
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	5 cut(s)	71, 199, 230, 590, 722
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	4 cut(s)	19, 173, 198, 265
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	3 cut(s)	235, 595, 919
Hpy188III	TCNNGA	3 cut(s)	222, 827, 880
Hpy8I	GTNNAC	1 cut(s)	559
HpyAV	CCTTC	3 cut(s)	177, 518, 829
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	4 cut(s)	284, 482, 904, 958
HpyF10VI	GCNNNNNNNGC	5 cut(s)	338, 408, 770, 892, 901
HpyF3I	CTNAG	2 cut(s)	234, 858
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	4 cut(s)	442, 748, 890, 979
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	6 cut(s)	247, 317, 519, 529, 736, 876
LmnI	GCTCC	1 cut(s)	829
Lsp1109I	GCAGC	5 cut(s)	413, 414, 494, 637, 800
LweI	GCATC	2 cut(s)	24, 945
MaeI	CTAG	2 cut(s)	155, 600
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	179, 271
MalI	GATC	6 cut(s)	249, 319, 521, 531, 738, 878
MboI	GATC	6 cut(s)	247, 317, 519, 529, 736, 876
MfeI	CAATTG	2 cut(s)	194, 264
MflI	RGATCY	3 cut(s)	247, 736, 876
MhlI	GDGCHC	2 cut(s)	420, 662
MluCI	AATT	8 cut(s)	194, 264, 306, 322, 434, 502, 544, 751
MlyI	GAGTC	2 cut(s)	65, 731
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	1 cut(s)	475
MspA1I	CMGCKG	3 cut(s)	405, 650, 791
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	312
MunI	CAATTG	2 cut(s)	194, 264
Mva1269I	GAATGC	1 cut(s)	383
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	5 cut(s)	338, 408, 770, 892, 901
NciI	CCSGG	1 cut(s)	312
NdeII	GATC	6 cut(s)	247, 317, 519, 529, 736, 876
NlaIII	CATG	4 cut(s)	442, 748, 890, 979
NlaIV	GGNNCC	2 cut(s)	659, 660
NmuCI	GTSAC	2 cut(s)	179, 271
PaeR7I	CTCGAG	1 cut(s)	727
PaqCI	CACCTGC	1 cut(s)	928
PcsI	WCGNNNNNNNCGW	1 cut(s)	680
PctI	GAATGC	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	199, 230, 590
PkrI	GCNGC	9 cut(s)	397, 404, 407, 410, 428, 484, 652, 775, 790
PleI	GAGTC	2 cut(s)	65, 730
PmaCI	CACGTG	1 cut(s)	415
PmlI	CACGTG	1 cut(s)	415
PpsI	GAGTC	2 cut(s)	65, 730
Ppu21I	YACGTR	1 cut(s)	415
PspCI	CACGTG	1 cut(s)	415
PspN4I	GGNNCC	2 cut(s)	659, 660
PspOMI	GGGCCC	1 cut(s)	658
PspPI	GGNCC	2 cut(s)	658, 659
PspXI	VCTCGAGB	1 cut(s)	727
PsuI	RGATCY	3 cut(s)	247, 736, 876
PvuII	CAGCTG	1 cut(s)	650
RseI	CAYNNNNRTG	1 cut(s)	475
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	9 cut(s)	396, 403, 406, 409, 427, 483, 651, 774, 789
Sau3AI	GATC	6 cut(s)	247, 317, 519, 529, 736, 876
Sau96I	GGNCC	2 cut(s)	658, 659
SchI	GAGTC	2 cut(s)	65, 731
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	2 cut(s)	420, 662
SfaNI	GCATC	2 cut(s)	24, 945
Sfr274I	CTCGAG	1 cut(s)	727
SlaI	CTCGAG	1 cut(s)	727
SmiMI	CAYNNNNRTG	1 cut(s)	475
SmlI	CTYRAG	2 cut(s)	382, 727
SmoI	CTYRAG	2 cut(s)	382, 727
Sse9I	AATT	8 cut(s)	194, 264, 306, 322, 434, 502, 544, 751
SsiI	CCGC	9 cut(s)	395, 405, 408, 429, 653, 705, 773, 791, 805
SspMI	CTAG	2 cut(s)	155, 600
StyD4I	CCNGG	1 cut(s)	310
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	3 cut(s)	420, 522, 728
TasI	AATT	8 cut(s)	194, 264, 306, 322, 434, 502, 544, 751
TauI	GCSGC	4 cut(s)	398, 408, 411, 776
TfiI	GAWTC	3 cut(s)	199, 230, 590
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	1 cut(s)	633
TseFI	GTSAC	2 cut(s)	179, 271
TseI	GCWGC	5 cut(s)	402, 426, 482, 650, 788
Tsp45I	GTSAC	2 cut(s)	179, 271
TspDTI	ATGAA	5 cut(s)	124, 427, 629, 761, 992
TspRI	CASTG	1 cut(s)	633
XapI	RAATTY	3 cut(s)	322, 434, 502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XhoI	CTCGAG	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	2 cut(s)	155, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.