Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010518

Physical Location & Seq

Genomic Coordinates Reverse (-)

8158778 .. 8159737

Gene Structure 960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGAACTGAGAGGGCGAGATAATAAGGTCATAGGGAGGATGCCAAGCACTCTGACCTATACTCCTCCTCCCCATAGGGATTCTTCTTCCTCCAAGCTTTCTTCTTCTCCGGCTTTCTCCTCAGCGGGACATCATGGTAGTAACACCATACTCTTCACCCACCCACCTCATCAAACCCTAGACAGATCAAGAAGAGATCCTAACCCAAACCCAGATCTAGTTCCATCTCCAGTTGTTGTCACCCCAAGTGCAACAGCAACAATTGCTAGTGGATCAAATTTCAAAGCACCACCAGCTCCACCGCCACCACCGCCAAGTGCAGCAGCATCAAGAATTAGGTATAGGGAGTGTTTGAAAAACCACGCTGCCAACAGCGGCGGCCACGTGCTCGATGGGTGCGGAGAGTTCATGCCGAGCGGAGATGAAGACACTCCGGGAGCACTAAAATGCGCAGCTTGCGAGTGTCATAGAAATTTTCACAGAAAAGAGATCGATGGCGAATATGTGTCAAATAATTACTATGTCATAAACCACCAACAACACAACAGCCGTAGAGACTCGGCGCTTACAAGATTGCCCCTGCTAGCCTCCCCAGCACGGGCGCTTCCTGTTTATCATTCTACGGCTGGAGGGCCCAGTCAGCCGATGATGATGACCTTCGGCGGCGGTGGTGGGGTGGTTGCGGAGTCATCGAGTGAGGATCTCAACATGAACAATAAATTGTTTCGCGGTGCAAATTATGCGGAGGAGGCACAAGGTTCGAAGAAGCGGTTTAGGACGAAGTTCAGTCAAGAGCAGAAGGAGAAGATGACGGATGTGGCGGAGAAGTTGGGGTGGACGATCCAGAAGCATGATGAGCAAGAAGTGCAGAAGTTGTGTTCTGAAGTGGGTATAAAGAGGCAGGTGTTCAAGGTATGGATGCACAATAACAAAAAAGCCATGAAGAAGAAACAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

320

Amino Acids

35.02

Weight (kDa)

9.46

Isoelectric Point (pI)

65.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	112 - 164	7.6e-30	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13170 FvH4_1g13170 FvH4_1g13170 FvH4_1g13170
malus_domestica	MD02G1146300.v1.1 MD15G1260600.v1.1
prunus_persica	Prupe.7G155700_v2.0.a1 Prupe.7G155700_v2.0.a1 Prupe.7G155700_v2.0.a1
pyrus_communis	pycom02g11590
rosa_chinensis	RchiOBHm_Chr2g0101391
rosa_laevigata	RLG00000017074
rosa_multiflora	Rmu_sc0006128.1_g000009
rosa_roxburghii	Rroxscaffold_2G00141340
rosa_rugosa	Rorug02G0098600 Rorug02G0098700
rosa_samantha	Rh2AG146500 Rh2BG151800 Rh2CG152500 Rh2DG151900
rosa_wichuraiana	Rw2G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	892
Acc16I	TGCGCA	1 cut(s)	451
Acc36I	ACCTGC	1 cut(s)	892
AccBSI	CCGCTC	1 cut(s)	417
AccII	CGCG	1 cut(s)	729
AclWI	GGATC	4 cut(s)	191, 280, 708, 835
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	277, 472
AcuI	CTGAAG	1 cut(s)	903
AcvI	CACGTG	1 cut(s)	385
AfiI	CCNNNNNNNGG	2 cut(s)	597, 598
AgsI	TTSAA	3 cut(s)	283, 355, 910
AluBI	AGCT	3 cut(s)	97, 296, 455
AluI	AGCT	3 cut(s)	97, 296, 455
Alw21I	GWGCWC	2 cut(s)	390, 442
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	4 cut(s)	191, 280, 708, 835
AoxI	GGCC	2 cut(s)	379, 632
ApaI	GGGCCC	1 cut(s)	636
ApeKI	GCWGC	4 cut(s)	320, 323, 365, 452
ApoI	RAATTY	2 cut(s)	277, 472
AspLEI	GCGC	3 cut(s)	452, 565, 604
AspS9I	GGNCC	2 cut(s)	632, 633
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	2 cut(s)	148, 232
AsuII	TTCGAA	1 cut(s)	761
AsuNHI	GCTAGC	1 cut(s)	583
BaeGI	GKGCMC	1 cut(s)	636
BanII	GRGCYC	1 cut(s)	636
BbrPI	CACGTG	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	390, 442
BbvCI	CCTCAGC	1 cut(s)	121
BbvI	GCAGC	4 cut(s)	332, 335, 352, 464
BccI	CCATC	3 cut(s)	232, 386, 488
BceAI	ACGGC	2 cut(s)	534, 639
BcgI	CGANNNNNNTGC	2 cut(s)	741, 775
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	4 cut(s)	179, 218, 267, 584
BfoI	RGCGCY	2 cut(s)	566, 605
BfuAI	ACCTGC	1 cut(s)	892
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	7 cut(s)	321, 324, 366, 376, 379, 453, 664
BlsI	GCNGC	7 cut(s)	322, 325, 367, 377, 380, 454, 665
Bme1390I	CCNGG	1 cut(s)	435
BmgT120I	GGNCC	2 cut(s)	632, 633
BmiI	GGNNCC	1 cut(s)	634
BmrFI	CCNGG	1 cut(s)	435
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	3 cut(s)	30, 335, 909
BmtI	GCTAGC	1 cut(s)	587
BmuI	ACTGGG	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	2 cut(s)	213, 648
Bpu10I	CCTNAGC	1 cut(s)	121
Bpu14I	TTCGAA	1 cut(s)	761
BpuMI	CCSGG	1 cut(s)	435
Bsa29I	ATCGAT	1 cut(s)	492
BsaAI	YACGTR	1 cut(s)	385
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 52, 76, 82
Bsc4I	CCNNNNNNNGG	2 cut(s)	597, 598
Bse1I	ACTGG	2 cut(s)	230, 636
BseCI	ATCGAT	1 cut(s)	492
BseGI	GGATG	3 cut(s)	45, 820, 924
BseLI	CCNNNNNNNGG	2 cut(s)	597, 598
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	230, 636
BseRI	GAGGAG	4 cut(s)	54, 57, 109, 761
BseSI	GKGCMC	1 cut(s)	636
BseXI	GCAGC	4 cut(s)	332, 335, 352, 464
BseYI	CCCAGC	1 cut(s)	592
BsgI	GTGCAG	2 cut(s)	339, 887
Bsh1236I	CGCG	1 cut(s)	729
BshFI	GGCC	2 cut(s)	381, 634
BshVI	ATCGAT	1 cut(s)	492
BsiHKAI	GWGCWC	2 cut(s)	390, 442
BsiSI	CCGG	2 cut(s)	110, 434
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	597, 598
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	2 cut(s)	381, 634
Bsp119I	TTCGAA	1 cut(s)	761
Bsp120I	GGGCCC	1 cut(s)	632
Bsp1286I	GDGCHC	3 cut(s)	390, 442, 636
Bsp143I	GATC	7 cut(s)	185, 196, 214, 272, 489, 700, 840
BspANI	GGCC	2 cut(s)	381, 634
BspCNI	CTCAG	1 cut(s)	134
BspDI	ATCGAT	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	729
BspLI	GGNNCC	1 cut(s)	634
BspMI	ACCTGC	1 cut(s)	892
BspOI	GCTAGC	1 cut(s)	587
BspPI	GGATC	4 cut(s)	191, 280, 708, 835
BspT104I	TTCGAA	1 cut(s)	761
BsrBI	CCGCTC	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	230, 636
BssMI	GATC	7 cut(s)	185, 196, 214, 272, 489, 700, 840
Bst6I	CTCTTC	2 cut(s)	158, 187
BstAPI	GCANNNNNTGC	3 cut(s)	263, 740, 865
BstBAI	YACGTR	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	761
BstC8I	GCNNGC	2 cut(s)	457, 585
BstDEI	CTNAG	2 cut(s)	8, 121
BstF5I	GGATG	3 cut(s)	45, 820, 924
BstFNI	CGCG	1 cut(s)	729
BstH2I	RGCGCY	2 cut(s)	566, 605
BstHHI	GCGC	3 cut(s)	452, 565, 604
BstKTI	GATC	7 cut(s)	188, 199, 217, 275, 492, 703, 843
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	7 cut(s)	185, 196, 214, 272, 489, 700, 840
BstSCI	CCNGG	1 cut(s)	433
BstSLI	GKGCMC	1 cut(s)	636
BstUI	CGCG	1 cut(s)	729
BstV1I	GCAGC	4 cut(s)	332, 335, 352, 464
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	3 cut(s)	196, 214, 700
BstYI	RGATCY	3 cut(s)	196, 214, 700
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	381, 634
BsuTUI	ATCGAT	1 cut(s)	492
BtsCI	GGATG	3 cut(s)	45, 820, 924
BveI	ACCTGC	1 cut(s)	892
Cac8I	GCNNGC	2 cut(s)	457, 585
CfoI	GCGC	3 cut(s)	452, 565, 604
Cfr13I	GGNCC	2 cut(s)	632, 633
ClaI	ATCGAT	1 cut(s)	492
CviAII	CATG	5 cut(s)	134, 409, 709, 851, 940
DdeI	CTNAG	2 cut(s)	8, 121
DpnI	GATC	7 cut(s)	187, 198, 216, 274, 491, 702, 842
DpnII	GATC	7 cut(s)	185, 196, 214, 272, 489, 700, 840
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	158, 187
EarI	CTCTTC	2 cut(s)	158, 187
EciI	GGCGGA	1 cut(s)	836
Eco24I	GRGCYC	1 cut(s)	636
Eco57I	CTGAAG	1 cut(s)	903
Eco72I	CACGTG	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	632
EcoT38I	GRGCYC	1 cut(s)	636
FaeI	CATG	5 cut(s)	137, 412, 712, 854, 943
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	5 cut(s)	133, 408, 708, 850, 939
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	7 cut(s)	321, 324, 366, 376, 379, 453, 664
FokI	GGATG	3 cut(s)	52, 827, 931
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	7 cut(s)	321, 324, 366, 376, 379, 453, 664
FspBI	CTAG	4 cut(s)	179, 218, 267, 584
FspI	TGCGCA	1 cut(s)	451
GlaI	GCGC	3 cut(s)	451, 564, 603
GluI	GCNGC	7 cut(s)	321, 324, 366, 376, 379, 453, 664
GsaI	CCCAGC	1 cut(s)	596
GsuI	CTGGAG	2 cut(s)	213, 648
HaeII	RGCGCY	2 cut(s)	566, 605
HaeIII	GGCC	2 cut(s)	381, 634
HapII	CCGG	2 cut(s)	110, 434
HhaI	GCGC	3 cut(s)	452, 565, 604
Hin1II	CATG	5 cut(s)	137, 412, 712, 854, 943
Hin6I	GCGC	3 cut(s)	450, 563, 602
HinP1I	GCGC	3 cut(s)	450, 563, 602
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	3 cut(s)	80, 557, 686
HpaII	CCGG	2 cut(s)	110, 434
HphI	GGTGA	2 cut(s)	148, 232
Hpy166II	GTNNAC	1 cut(s)	837
Hpy188I	TCNGA	2 cut(s)	54, 883
Hpy188III	TCNNGA	4 cut(s)	189, 330, 791, 844
Hpy8I	GTNNAC	1 cut(s)	837
HpyAV	CCTTC	2 cut(s)	667, 793
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	5 cut(s)	251, 320, 734, 868, 922
HpyF3I	CTNAG	2 cut(s)	8, 121
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	5 cut(s)	137, 412, 712, 854, 943
HspAI	GCGC	3 cut(s)	450, 563, 602
Kzo9I	GATC	7 cut(s)	185, 196, 214, 272, 489, 700, 840
LmnI	GCTCC	2 cut(s)	301, 437
Lsp1109I	GCAGC	4 cut(s)	332, 335, 352, 464
LweI	GCATC	3 cut(s)	30, 335, 909
MaeI	CTAG	4 cut(s)	179, 218, 267, 584
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	140, 238
MalI	GATC	7 cut(s)	187, 198, 216, 274, 491, 702, 842
MbiI	CCGCTC	1 cut(s)	417
MboI	GATC	7 cut(s)	185, 196, 214, 272, 489, 700, 840
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	3 cut(s)	196, 214, 700
MhlI	GDGCHC	3 cut(s)	390, 442, 636
MluCI	AATT	7 cut(s)	261, 277, 333, 472, 514, 719, 736
MlyI	GAGTC	2 cut(s)	551, 695
MslI	CAYNNNNRTG	1 cut(s)	445
MspA1I	CMGCKG	2 cut(s)	125, 375
MspI	CCGG	2 cut(s)	110, 434
MspR9I	CCNGG	1 cut(s)	435
MunI	CAATTG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	729
NciI	CCSGG	1 cut(s)	435
NdeII	GATC	7 cut(s)	185, 196, 214, 272, 489, 700, 840
NheI	GCTAGC	1 cut(s)	583
NlaIII	CATG	5 cut(s)	137, 412, 712, 854, 943
NlaIV	GGNNCC	1 cut(s)	634
NmeAIII	GCCGAG	2 cut(s)	438, 539
NmuCI	GTSAC	1 cut(s)	238
NsbI	TGCGCA	1 cut(s)	451
NspV	TTCGAA	1 cut(s)	761
PaqCI	CACCTGC	1 cut(s)	892
PfeI	GAWTC	1 cut(s)	80
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	7 cut(s)	322, 325, 367, 377, 380, 454, 665
PleI	GAGTC	2 cut(s)	551, 694
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
PpsI	GAGTC	2 cut(s)	551, 694
Ppu21I	YACGTR	1 cut(s)	385
PspCI	CACGTG	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	592
PspN4I	GGNNCC	1 cut(s)	634
PspOMI	GGGCCC	1 cut(s)	632
PspPI	GGNCC	2 cut(s)	632, 633
PsuI	RGATCY	3 cut(s)	196, 214, 700
RseI	CAYNNNNRTG	1 cut(s)	445
SatI	GCNGC	7 cut(s)	321, 324, 366, 376, 379, 453, 664
Sau3AI	GATC	7 cut(s)	185, 196, 214, 272, 489, 700, 840
Sau96I	GGNCC	2 cut(s)	632, 633
SchI	GAGTC	2 cut(s)	551, 695
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	3 cut(s)	390, 442, 636
SfaNI	GCATC	3 cut(s)	30, 335, 909
SfuI	TTCGAA	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	445
Sse9I	AATT	7 cut(s)	261, 277, 333, 472, 514, 719, 736
SspMI	CTAG	4 cut(s)	179, 218, 267, 584
StyD4I	CCNGG	1 cut(s)	433
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	4 cut(s)	390, 492, 692, 761
TasI	AATT	7 cut(s)	261, 277, 333, 472, 514, 719, 736
TauI	GCSGC	3 cut(s)	378, 381, 666
TfiI	GAWTC	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	4 cut(s)	320, 323, 365, 452
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	4 cut(s)	397, 438, 725, 956
TspGWI	ACGGA	1 cut(s)	827
XapI	RAATTY	2 cut(s)	277, 472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XspI	CTAG	4 cut(s)	179, 218, 267, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.