Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006128.1

Orthogroup ID

OG0010518

Physical Location & Seq

Genomic Coordinates Forward (+)

29253 .. 30308

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006128.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atggaggtgagaggccaagataaggttttagggatgccaaccactttggggttcaatccccaacatagagactcttcttcttccaagctctcttctccatctcttcaccatcatgttaacaacacattaatctttaaccacccccaaaccctagaccctttttatcaggctccacctcatcatcatcatcatcatcagcctcagcaatcgaatccatacaaacccagtagagatcctgacccaatccctatcccaaacccagatccaaacctatcaccagctgctgtctgcaccagcccaagagcaacaagcggcacaccaattgcaagccgagcaaaccacagcttcaaagcagcaccatcggcactggcacctgagccaattacagcttcgaaagcagttagatatcgagaatgcttgaagaatcacgcagcgagcactggagggtatgtactggatggctgcggagagttcatgccgagcggagaggaagacagcccgggaggactaaaatgtgcagcgtgtgagtgccacaggagtttccacaggaaagagatcgagggtgaaacccaactagtacatgtacccaataattaccatgtccttaaccaccacaacaaaaacagccacagcagccggaatgcatcatcagcacctgttctatcctcactccctccaccacctcctgttcatcatcatcatcagtaccatcatttcccagccactagtccttccgtggcgggatcatttcctcctgggatgatgacttttggaggtggcggaggggcggccgagtcatctagtgaggatctcaaccacatccacatgtacgagcagtcaaatcaggccgggggttcaaagaagcggtttcggacaaagttcagtcaagagcagaaggacaagatgatggaggtggcagaaaagttgggatggaggatccagaagcacgatgagcaagaggtgcagcagttgtgttctgaattgggtataaggagacaggttttcaaggtatggatgcacaataataaacaagccatgaagaagaagcaactgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

351

Amino Acids

38.82

Weight (kDa)

8.89

Isoelectric Point (pI)

72.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13170 FvH4_1g13170 FvH4_1g13170 FvH4_1g13170
malus_domestica	MD02G1146300.v1.1 MD15G1260600.v1.1
prunus_persica	Prupe.7G155700_v2.0.a1 Prupe.7G155700_v2.0.a1 Prupe.7G155700_v2.0.a1
pyrus_communis	pycom02g11590
rosa_chinensis	RchiOBHm_Chr2g0101391
rosa_laevigata	RLG00000017074
rosa_multiflora	Rmu_sc0006128.1_g000009
rosa_roxburghii	Rroxscaffold_2G00141340
rosa_rugosa	Rorug02G0098600 Rorug02G0098700
rosa_samantha	Rh2AG146500 Rh2BG151800 Rh2CG152500 Rh2DG151900
rosa_wichuraiana	Rw2G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	370
AccBSI	CCGCTC	1 cut(s)	483
AciI	CCGC	7 cut(s)	312, 465, 483, 740, 780, 788, 865
AclWI	GGATC	6 cut(s)	227, 257, 751, 816, 931, 944
AcoI	YGGCCR	1 cut(s)	789
AfaI	GTAC	5 cut(s)	453, 579, 585, 707, 830
AfiI	CCNNNNNNNGG	2 cut(s)	22, 48
AflIII	ACRYGT	2 cut(s)	580, 825
AgsI	TTSAA	5 cut(s)	55, 349, 421, 858, 1006
AhlI	ACTAGT	2 cut(s)	574, 725
AjnI	CCWGG	1 cut(s)	754
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AluBI	AGCT	4 cut(s)	88, 281, 345, 389
AluI	AGCT	4 cut(s)	88, 281, 345, 389
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	2 cut(s)	63, 988
AlwI	GGATC	6 cut(s)	227, 257, 751, 816, 931, 944
AlwNI	CAGNNNCTG	2 cut(s)	284, 656
Ama87I	CYCGRG	1 cut(s)	499
AoxI	GGCC	3 cut(s)	13, 789, 846
ApeKI	GCWGC	7 cut(s)	281, 353, 431, 462, 518, 633, 964
AseI	ATTAAT	1 cut(s)	128
AsuC2I	CCSGG	3 cut(s)	500, 501, 850
AsuHPI	GGTGA	4 cut(s)	19, 98, 267, 575
AsuII	TTCGAA	1 cut(s)	392
AvaI	CYCGRG	1 cut(s)	499
BamHI	GGATCC	1 cut(s)	936
BanI	GGYRCC	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	7 cut(s)	268, 365, 443, 449, 530, 645, 976
BccI	CCATC	7 cut(s)	106, 117, 367, 452, 717, 901, 924
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BciT130I	CCWGG	1 cut(s)	756
BcnI	CCSGG	3 cut(s)	500, 501, 850
BcoDI	GTCTC	2 cut(s)	63, 988
BcuI	ACTAGT	2 cut(s)	574, 725
BfaI	CTAG	4 cut(s)	152, 575, 726, 801
BisI	GCNGC	9 cut(s)	282, 313, 354, 432, 463, 519, 634, 789, 965
BlsI	GCNGC	9 cut(s)	283, 314, 355, 433, 464, 520, 635, 790, 966
Bme1390I	CCNGG	4 cut(s)	500, 501, 756, 850
BmeT110I	CYCGRG	1 cut(s)	499
BmiI	GGNNCC	3 cut(s)	171, 372, 938
BmrFI	CCNGG	4 cut(s)	500, 501, 756, 850
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	3 cut(s)	24, 653, 1005
BmuI	ACTGGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	498
BpmI	CTGGAG	1 cut(s)	462
Bpu10I	CCTNAGC	2 cut(s)	201, 375
Bpu14I	TTCGAA	1 cut(s)	392
BpuMI	CCSGG	3 cut(s)	500, 501, 850
BsaJI	CCNNGG	4 cut(s)	499, 735, 755, 849
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 48
Bse1I	ACTGG	4 cut(s)	225, 372, 445, 459
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	4 cut(s)	499, 735, 755, 849
BseGI	GGATG	6 cut(s)	39, 463, 765, 819, 935, 1020
BseLI	CCNNNNNNNGG	2 cut(s)	22, 48
BseMII	CTCAG	2 cut(s)	215, 366
BseNI	ACTGG	4 cut(s)	225, 372, 445, 459
BseX3I	CGGCCG	1 cut(s)	789
BseXI	GCAGC	7 cut(s)	268, 365, 443, 449, 530, 645, 976
BseYI	CCCAGC	1 cut(s)	718
BsgI	GTGCAG	3 cut(s)	274, 537, 983
Bsh1285I	CGRYCG	1 cut(s)	792
BshFI	GGCC	3 cut(s)	15, 791, 848
BshNI	GGYRCC	1 cut(s)	370
BsiEI	CGRYCG	1 cut(s)	792
BsiHKAI	GWGCWC	1 cut(s)	440
BsiHKCI	CYCGRG	1 cut(s)	499
BsiSI	CCGG	3 cut(s)	500, 637, 849
BslI	CCNNNNNNNGG	2 cut(s)	22, 48
BsmAI	GTCTC	2 cut(s)	63, 988
BsmI	GAATGC	2 cut(s)	419, 646
BsnI	GGCC	3 cut(s)	15, 791, 848
BsoBI	CYCGRG	1 cut(s)	499
Bsp119I	TTCGAA	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	6 cut(s)	232, 262, 555, 743, 808, 936
BspACI	CCGC	7 cut(s)	312, 465, 483, 740, 780, 788, 865
BspANI	GGCC	3 cut(s)	15, 791, 848
BspCNI	CTCAG	2 cut(s)	214, 367
BspLI	GGNNCC	3 cut(s)	171, 372, 938
BspPI	GGATC	6 cut(s)	227, 257, 751, 816, 931, 944
BspT104I	TTCGAA	1 cut(s)	392
BspT107I	GGYRCC	1 cut(s)	370
BsrBI	CCGCTC	1 cut(s)	483
BsrI	ACTGG	4 cut(s)	225, 372, 445, 459
BssECI	CCNNGG	4 cut(s)	499, 735, 755, 849
BssMI	GATC	6 cut(s)	232, 262, 555, 743, 808, 936
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	1 cut(s)	1053
Bst6I	CTCTTC	3 cut(s)	79, 97, 108
BstAPI	GCANNNNNTGC	1 cut(s)	961
BstBI	TTCGAA	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	328, 436
BstDEI	CTNAG	2 cut(s)	201, 375
BstDSI	CCRYGG	1 cut(s)	735
BstF5I	GGATG	6 cut(s)	39, 463, 765, 819, 935, 1020
BstKTI	GATC	6 cut(s)	235, 265, 558, 746, 811, 939
BstMAI	GTCTC	2 cut(s)	63, 988
BstMBI	GATC	6 cut(s)	232, 262, 555, 743, 808, 936
BstMCI	CGRYCG	1 cut(s)	792
BstMWI	GCNNNNNNNGC	7 cut(s)	332, 362, 395, 633, 650, 952, 961
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	2 cut(s)	584, 829
BstSCI	CCNGG	4 cut(s)	498, 499, 754, 848
BstV1I	GCAGC	7 cut(s)	268, 365, 443, 449, 530, 645, 976
BstV2I	GAAGAC	1 cut(s)	498
BstX2I	RGATCY	4 cut(s)	232, 262, 808, 936
BstYI	RGATCY	4 cut(s)	232, 262, 808, 936
BstZI	CGGCCG	1 cut(s)	789
BsuRI	GGCC	3 cut(s)	15, 791, 848
BtgI	CCRYGG	1 cut(s)	735
BtsCI	GGATG	6 cut(s)	39, 463, 765, 819, 935, 1020
BtsIMutI	CAGTG	2 cut(s)	365, 438
Cac8I	GCNNGC	2 cut(s)	328, 436
CaiI	CAGNNNCTG	2 cut(s)	284, 656
Cfr9I	CCCGGG	1 cut(s)	499
Csp6I	GTAC	5 cut(s)	452, 578, 584, 706, 829
CviAII	CATG	6 cut(s)	113, 475, 581, 599, 826, 1036
CviQI	GTAC	5 cut(s)	452, 578, 584, 706, 829
DdeI	CTNAG	2 cut(s)	201, 375
DpnI	GATC	6 cut(s)	234, 264, 557, 745, 810, 938
DpnII	GATC	6 cut(s)	232, 262, 555, 743, 808, 936
EaeI	YGGCCR	1 cut(s)	789
EagI	CGGCCG	1 cut(s)	789
Eam1104I	CTCTTC	3 cut(s)	79, 97, 108
EarI	CTCTTC	3 cut(s)	79, 97, 108
EciI	GGCGGA	1 cut(s)	795
EclXI	CGGCCG	1 cut(s)	789
Eco32I	GATATC	1 cut(s)	407
Eco52I	CGGCCG	1 cut(s)	789
Eco88I	CYCGRG	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	754
EcoRV	GATATC	1 cut(s)	407
EcoT22I	ATGCAT	1 cut(s)	646
FaeI	CATG	6 cut(s)	116, 478, 584, 602, 829, 1039
FatI	CATG	6 cut(s)	112, 474, 580, 598, 825, 1035
FauI	CCCGC	1 cut(s)	733
Fnu4HI	GCNGC	9 cut(s)	282, 313, 354, 432, 463, 519, 634, 789, 965
FokI	GGATG	6 cut(s)	46, 470, 772, 806, 942, 1027
Fsp4HI	GCNGC	9 cut(s)	282, 313, 354, 432, 463, 519, 634, 789, 965
FspBI	CTAG	4 cut(s)	152, 575, 726, 801
GluI	GCNGC	9 cut(s)	282, 313, 354, 432, 463, 519, 634, 789, 965
GsaI	CCCAGC	1 cut(s)	722
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	3 cut(s)	15, 791, 848
HapII	CCGG	3 cut(s)	500, 637, 849
Hin1II	CATG	6 cut(s)	116, 478, 584, 602, 829, 1039
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	4 cut(s)	71, 211, 424, 794
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	3 cut(s)	500, 637, 849
HphI	GGTGA	4 cut(s)	19, 98, 267, 575
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	873, 979
Hpy188III	TCNNGA	4 cut(s)	236, 410, 887, 940
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	741, 889
HpyCH4III	ACNGT	1 cut(s)	1053
HpyCH4V	TGCA	6 cut(s)	291, 326, 518, 644, 964, 1018
HpyF10VI	GCNNNNNNNGC	7 cut(s)	332, 362, 395, 633, 650, 952, 961
HpyF3I	CTNAG	2 cut(s)	201, 375
Hsp92II	CATG	6 cut(s)	116, 478, 584, 602, 829, 1039
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	6 cut(s)	232, 262, 555, 743, 808, 936
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	7 cut(s)	268, 365, 443, 449, 530, 645, 976
LweI	GCATC	3 cut(s)	24, 653, 1005
MaeI	CTAG	4 cut(s)	152, 575, 726, 801
MalI	GATC	6 cut(s)	234, 264, 557, 745, 810, 938
MbiI	CCGCTC	1 cut(s)	483
MboI	GATC	6 cut(s)	232, 262, 555, 743, 808, 936
MboII	GAAGA	9 cut(s)	66, 69, 72, 84, 95, 433, 503, 1051, 1054
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	4 cut(s)	232, 262, 808, 936
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	4 cut(s)	321, 381, 592, 980
MlyI	GAGTC	2 cut(s)	65, 803
Mph1103I	ATGCAT	1 cut(s)	646
MseI	TTAA	4 cut(s)	117, 128, 135, 606
MslI	CAYNNNNRTG	2 cut(s)	111, 824
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	3 cut(s)	500, 637, 849
MspR9I	CCNGG	4 cut(s)	500, 501, 756, 850
MunI	CAATTG	1 cut(s)	321
Mva1269I	GAATGC	2 cut(s)	419, 646
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	7 cut(s)	332, 362, 395, 633, 650, 952, 961
NciI	CCSGG	3 cut(s)	500, 501, 850
NdeII	GATC	6 cut(s)	232, 262, 555, 743, 808, 936
NlaIII	CATG	6 cut(s)	116, 478, 584, 602, 829, 1039
NlaIV	GGNNCC	3 cut(s)	171, 372, 938
NmeAIII	GCCGAG	3 cut(s)	356, 504, 817
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	2 cut(s)	584, 829
NspV	TTCGAA	1 cut(s)	392
PciI	ACATGT	2 cut(s)	580, 825
PctI	GAATGC	2 cut(s)	419, 646
PfeI	GAWTC	2 cut(s)	211, 424
PkrI	GCNGC	9 cut(s)	283, 314, 355, 433, 464, 520, 635, 790, 966
PleI	GAGTC	2 cut(s)	65, 802
PpsI	GAGTC	2 cut(s)	65, 802
PscI	ACATGT	2 cut(s)	580, 825
PshBI	ATTAAT	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	754
PspFI	CCCAGC	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	3 cut(s)	171, 372, 938
PstNI	CAGNNNCTG	2 cut(s)	284, 656
PsuI	RGATCY	4 cut(s)	232, 262, 808, 936
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	5 cut(s)	453, 579, 585, 707, 830
RsaNI	GTAC	5 cut(s)	452, 578, 584, 706, 829
RseI	CAYNNNNRTG	2 cut(s)	111, 824
SaqAI	TTAA	4 cut(s)	117, 128, 135, 606
SatI	GCNGC	9 cut(s)	282, 313, 354, 432, 463, 519, 634, 789, 965
Sau3AI	GATC	6 cut(s)	232, 262, 555, 743, 808, 936
SchI	GAGTC	2 cut(s)	65, 803
ScrFI	CCNGG	4 cut(s)	500, 501, 756, 850
SduI	GDGCHC	1 cut(s)	440
SfaNI	GCATC	3 cut(s)	24, 653, 1005
SfuI	TTCGAA	1 cut(s)	392
SmaI	CCCGGG	1 cut(s)	501
SmiMI	CAYNNNNRTG	2 cut(s)	111, 824
SpeI	ACTAGT	2 cut(s)	574, 725
Sse9I	AATT	4 cut(s)	321, 381, 592, 980
SsiI	CCGC	7 cut(s)	312, 465, 483, 740, 780, 788, 865
SspMI	CTAG	4 cut(s)	152, 575, 726, 801
StyD4I	CCNGG	4 cut(s)	498, 499, 754, 848
TaaI	ACNGT	1 cut(s)	1053
TaqI	TCGA	4 cut(s)	209, 392, 409, 558
TasI	AATT	4 cut(s)	321, 381, 592, 980
TatI	WGTACW	2 cut(s)	451, 577
TauI	GCSGC	2 cut(s)	315, 791
TfiI	GAWTC	2 cut(s)	211, 424
Tru1I	TTAA	4 cut(s)	117, 128, 135, 606
Tru9I	TTAA	4 cut(s)	117, 128, 135, 606
TscAI	CASTG	2 cut(s)	372, 445
TseI	GCWGC	7 cut(s)	281, 353, 431, 462, 518, 633, 964
TspDTI	ATGAA	3 cut(s)	463, 680, 1052
TspGWI	ACGGA	1 cut(s)	724
TspMI	CCCGGG	1 cut(s)	499
TspRI	CASTG	2 cut(s)	372, 445
VspI	ATTAAT	1 cut(s)	128
XceI	RCATGY	2 cut(s)	584, 829
XmaI	CCCGGG	1 cut(s)	499
XspI	CTAG	4 cut(s)	152, 575, 726, 801
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.