RLG00000017074

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010518
Physical Location & Seq
Reverse (-)
12586504 .. 12588487
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017074

Sequence Viewer

Length: 1149 bp
ATGCCAACCACTTTGGGGTTCAATCCCCAAAATAGAGACTCTTCTTCTTCCAAGCTCTCTTCTCCATCTCTTCATCATCATGTTAACAACACATTAATCTTCAACCACCCCCAAACCCTAGACCCTTTTTATCAGGCTCCACCTCATCATCATCATCATCATCATCATCAGCCTCAGCAATCGAATCCATACAAACCCAGTAGAGATCCTGACCCAATCTCTATCCCAAACCCAGATCCAAACCTATCACCAGCTGCTGTCTGCACCAGCCCAAGGGCAACAAGCGGCACACCAATTGCAAGCCGAGCAAACCACAGCTTCAAAGCAGCACCATCGGCACCGGCACCTGAGCCAGTTACAGCTTCGAAAGCGGTTAGATATCGAGAATGCTTGAAGAATCACGCAGCGAGCACTGGAGGGCATGTACTGGATGGCTGCGGAGAGTTCATGCCGAGCGGAGAGGAAGACAGCCCGGGAGGACTAAAATGTGCAGCGTGTGAGTGCCACAGGAATTTCCACAGGCAAGAGATTGAGGGTGAAACCCAACTAGTACATGTACCCAATAATTACCATGTCCTTAACCACCACAACAAAAACAGCCACAGCAGCCGGAATGCATCATCAGCACCTGTTCTATCCTCGCTCCCTCCACCACCTCCTGTTCAACATCATCATCAGTACCATCATTTCCCAGTCACTAGTCCTTCCGTGGCGGGATCATTTCCTCCTGGGATGATGACTTTTGGAGGTGGCGGAGGGGCGGCCGAGTCATCTAGTGAAGATCTCAACCACATCCACATGTTCGAGCAGTCAAATCAGGCCGGGGGTTCGAAGAAGCGGTTTCGGACAAAGTTCAGTCAAGAGCAGAAGGACAAGATGATGGAGGTGGCAGAAAAGTTGGGATGGAGGATCCAGAAGCACGATGAGCAAGAGGTGCAGCAGTTGTGTTCTGAATTGGGTATAAGGAGACAGGTTTTCAAGGTATGGATGCACAATAATAAACAAGCCATGAAGAAGAAGCAACTTAGGGGTAAACACGAAGAGAAAGATGGCGCACATAAGCGAGGAAGGGAAAGTTCAGAAGTTTTTCTAGAACAGCGCGCCATTCCTGTGTATACTTCCGGGGTAACAAAGAAAAGGGTACCCTAA

Protein Analysis

383

Amino Acids

42.37

Weight (kDa)

9.17

Isoelectric Point (pI)

72.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 125 - 177 2.9e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1141
AccB1I GGYRCC 3 cut(s) 337, 343, 1141
AccBSI CCGCTC 1 cut(s) 456
AccI GTMKAC 1 cut(s) 1115
AccII CGCG 1 cut(s) 1101
AciI CCGC 8 cut(s) 285, 371, 438, 456, 713, 753, 761, 838
AclWI GGATC 5 cut(s) 200, 230, 724, 904, 917
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 1 cut(s) 511
AfaI GTAC 5 cut(s) 426, 552, 558, 680, 1143
AfiI CCNNNNNNNGG 2 cut(s) 15, 273
AflIII ACRYGT 2 cut(s) 553, 798
AgsI TTSAA 6 cut(s) 22, 103, 322, 394, 665, 979
AhlI ACTAGT 2 cut(s) 547, 698
AjnI CCWGG 1 cut(s) 727
AluBI AGCT 4 cut(s) 55, 254, 318, 362
AluI AGCT 4 cut(s) 55, 254, 318, 362
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 2 cut(s) 30, 961
AlwI GGATC 5 cut(s) 200, 230, 724, 904, 917
AlwNI CAGNNNCTG 2 cut(s) 257, 629
Ama87I CYCGRG 1 cut(s) 472
AoxI GGCC 2 cut(s) 762, 819
ApeKI GCWGC 7 cut(s) 254, 326, 404, 435, 491, 606, 937
ApoI RAATTY 1 cut(s) 511
AseI ATTAAT 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 1086
Asp718I GGTACC 1 cut(s) 1141
AspLEI GCGC 3 cut(s) 1055, 1101, 1103
AsuC2I CCSGG 4 cut(s) 473, 474, 823, 1123
AsuHPI GGTGA 2 cut(s) 240, 548
AsuII TTCGAA 2 cut(s) 365, 830
AvaI CYCGRG 1 cut(s) 472
BamHI GGATCC 1 cut(s) 909
BanI GGYRCC 3 cut(s) 337, 343, 1141
BbsI GAAGAC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 413
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 7 cut(s) 241, 338, 416, 422, 503, 618, 949
BccI CCATC 7 cut(s) 73, 340, 425, 690, 874, 897, 1043
BcgI CGANNNNNNTGC 2 cut(s) 315, 349
BciT130I CCWGG 1 cut(s) 729
BcnI CCSGG 4 cut(s) 473, 474, 823, 1123
BcoDI GTCTC 2 cut(s) 30, 961
BcuI ACTAGT 2 cut(s) 547, 698
BfaI CTAG 5 cut(s) 119, 548, 699, 774, 1091
BglII AGATCT 1 cut(s) 781
BisI GCNGC 9 cut(s) 255, 286, 327, 405, 436, 492, 607, 762, 938
BlsI GCNGC 9 cut(s) 256, 287, 328, 406, 437, 493, 608, 763, 939
Bme1390I CCNGG 5 cut(s) 473, 474, 729, 823, 1123
BmeT110I CYCGRG 1 cut(s) 472
BmiI GGNNCC 5 cut(s) 138, 339, 345, 911, 1143
BmrFI CCNGG 5 cut(s) 473, 474, 729, 823, 1123
BmrI ACTGGG 2 cut(s) 192, 686
BmsI GCATC 2 cut(s) 626, 978
BmuI ACTGGG 2 cut(s) 192, 686
BpiI GAAGAC 1 cut(s) 471
BpmI CTGGAG 1 cut(s) 435
Bpu10I CCTNAGC 2 cut(s) 174, 348
Bpu14I TTCGAA 2 cut(s) 365, 830
BpuMI CCSGG 4 cut(s) 473, 474, 823, 1123
BsaJI CCNNGG 6 cut(s) 272, 472, 708, 728, 822, 1122
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 273
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 5 cut(s) 198, 353, 418, 432, 692
BseBI CCWGG 1 cut(s) 729
BseDI CCNNGG 6 cut(s) 272, 472, 708, 728, 822, 1122
BseGI GGATG 5 cut(s) 436, 738, 792, 908, 993
BseLI CCNNNNNNNGG 2 cut(s) 15, 273
BseMII CTCAG 2 cut(s) 188, 339
BseNI ACTGG 5 cut(s) 198, 353, 418, 432, 692
BsePI GCGCGC 1 cut(s) 1099
BseX3I CGGCCG 1 cut(s) 762
BseXI GCAGC 7 cut(s) 241, 338, 416, 422, 503, 618, 949
BsgI GTGCAG 3 cut(s) 247, 510, 956
Bsh1236I CGCG 1 cut(s) 1101
Bsh1285I CGRYCG 1 cut(s) 765
BshFI GGCC 2 cut(s) 764, 821
BshNI GGYRCC 3 cut(s) 337, 343, 1141
BsiEI CGRYCG 1 cut(s) 765
BsiHKAI GWGCWC 1 cut(s) 413
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 5 cut(s) 341, 473, 610, 822, 1122
BslI CCNNNNNNNGG 2 cut(s) 15, 273
BsmAI GTCTC 2 cut(s) 30, 961
BsmI GAATGC 2 cut(s) 392, 619
BsnI GGCC 2 cut(s) 764, 821
BsoBI CYCGRG 1 cut(s) 472
Bsp119I TTCGAA 2 cut(s) 365, 830
Bsp1286I GDGCHC 1 cut(s) 413
Bsp143I GATC 5 cut(s) 205, 235, 716, 781, 909
BspACI CCGC 8 cut(s) 285, 371, 438, 456, 713, 753, 761, 838
BspANI GGCC 2 cut(s) 764, 821
BspCNI CTCAG 2 cut(s) 187, 340
BspFNI CGCG 1 cut(s) 1101
BspLI GGNNCC 5 cut(s) 138, 339, 345, 911, 1143
BspPI GGATC 5 cut(s) 200, 230, 724, 904, 917
BspT104I TTCGAA 2 cut(s) 365, 830
BspT107I GGYRCC 3 cut(s) 337, 343, 1141
BsrBI CCGCTC 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 5 cut(s) 198, 353, 418, 432, 692
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 6 cut(s) 272, 472, 708, 728, 822, 1122
BssHII GCGCGC 1 cut(s) 1099
BssMI GATC 5 cut(s) 205, 235, 716, 781, 909
BssNAI GTATAC 1 cut(s) 1116
BssT1I CCWWGG 1 cut(s) 272
Bst1107I GTATAC 1 cut(s) 1116
Bst2UI CCWGG 1 cut(s) 729
Bst6I CTCTTC 4 cut(s) 46, 64, 75, 1035
BstAPI GCANNNNNTGC 1 cut(s) 934
BstBI TTCGAA 2 cut(s) 365, 830
BstC8I GCNNGC 3 cut(s) 301, 409, 1101
BstDEI CTNAG 3 cut(s) 174, 348, 1025
BstDSI CCRYGG 1 cut(s) 708
BstF5I GGATG 5 cut(s) 436, 738, 792, 908, 993
BstFNI CGCG 1 cut(s) 1101
BstHHI GCGC 3 cut(s) 1055, 1101, 1103
BstKTI GATC 5 cut(s) 208, 238, 719, 784, 912
BstMAI GTCTC 2 cut(s) 30, 961
BstMBI GATC 5 cut(s) 205, 235, 716, 781, 909
BstMCI CGRYCG 1 cut(s) 765
BstMWI GCNNNNNNNGC 7 cut(s) 305, 335, 368, 606, 623, 925, 934
BstNI CCWGG 1 cut(s) 729
BstNSI RCATGY 3 cut(s) 425, 557, 802
BstSCI CCNGG 5 cut(s) 471, 472, 727, 821, 1121
BstUI CGCG 1 cut(s) 1101
BstV1I GCAGC 7 cut(s) 241, 338, 416, 422, 503, 618, 949
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 4 cut(s) 205, 235, 781, 909
BstYI RGATCY 4 cut(s) 205, 235, 781, 909
BstZ17I GTATAC 1 cut(s) 1116
BstZI CGGCCG 1 cut(s) 762
BsuRI GGCC 2 cut(s) 764, 821
BtgI CCRYGG 1 cut(s) 708
BtsCI GGATG 5 cut(s) 436, 738, 792, 908, 993
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 3 cut(s) 301, 409, 1101
CaiI CAGNNNCTG 2 cut(s) 257, 629
CfoI GCGC 3 cut(s) 1055, 1101, 1103
Cfr10I RCCGGY 1 cut(s) 340
Cfr9I CCCGGG 1 cut(s) 472
Csp6I GTAC 5 cut(s) 425, 551, 557, 679, 1142
CviAII CATG 7 cut(s) 80, 422, 448, 554, 572, 799, 1009
CviQI GTAC 5 cut(s) 425, 551, 557, 679, 1142
DdeI CTNAG 3 cut(s) 174, 348, 1025
DpnI GATC 5 cut(s) 207, 237, 718, 783, 911
DpnII GATC 5 cut(s) 205, 235, 716, 781, 909
EaeI YGGCCR 1 cut(s) 762
EagI CGGCCG 1 cut(s) 762
Eam1104I CTCTTC 4 cut(s) 46, 64, 75, 1035
EarI CTCTTC 4 cut(s) 46, 64, 75, 1035
EciI GGCGGA 1 cut(s) 768
EclXI CGGCCG 1 cut(s) 762
Eco130I CCWWGG 1 cut(s) 272
Eco32I GATATC 1 cut(s) 380
Eco52I CGGCCG 1 cut(s) 762
Eco88I CYCGRG 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 727
EcoRV GATATC 1 cut(s) 380
EcoT14I CCWWGG 1 cut(s) 272
EcoT22I ATGCAT 1 cut(s) 619
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 7 cut(s) 83, 425, 451, 557, 575, 802, 1012
FatI CATG 7 cut(s) 79, 421, 447, 553, 571, 798, 1008
FauI CCCGC 1 cut(s) 706
FblI GTMKAC 1 cut(s) 1115
Fnu4HI GCNGC 9 cut(s) 255, 286, 327, 405, 436, 492, 607, 762, 938
FokI GGATG 5 cut(s) 443, 745, 779, 915, 1000
Fsp4HI GCNGC 9 cut(s) 255, 286, 327, 405, 436, 492, 607, 762, 938
FspBI CTAG 5 cut(s) 119, 548, 699, 774, 1091
GlaI GCGC 3 cut(s) 1054, 1100, 1102
GluI GCNGC 9 cut(s) 255, 286, 327, 405, 436, 492, 607, 762, 938
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 2 cut(s) 764, 821
HapII CCGG 5 cut(s) 341, 473, 610, 822, 1122
HhaI GCGC 3 cut(s) 1055, 1101, 1103
Hin1II CATG 7 cut(s) 83, 425, 451, 557, 575, 802, 1012
Hin6I GCGC 3 cut(s) 1053, 1099, 1101
HinP1I GCGC 3 cut(s) 1053, 1099, 1101
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 4 cut(s) 38, 184, 397, 767
HpaI GTTAAC 1 cut(s) 85
HpaII CCGG 5 cut(s) 341, 473, 610, 822, 1122
HphI GGTGA 2 cut(s) 240, 548
Hpy166II GTNNAC 3 cut(s) 85, 1034, 1116
Hpy188I TCNGA 3 cut(s) 846, 952, 1081
Hpy188III TCNNGA 5 cut(s) 209, 383, 860, 913, 1091
Hpy8I GTNNAC 3 cut(s) 85, 1034, 1116
HpyAV CCTTC 3 cut(s) 714, 862, 1062
HpyCH4V TGCA 6 cut(s) 264, 299, 491, 617, 937, 991
HpyF10VI GCNNNNNNNGC 7 cut(s) 305, 335, 368, 606, 623, 925, 934
HpyF3I CTNAG 3 cut(s) 174, 348, 1025
Hsp92II CATG 7 cut(s) 83, 425, 451, 557, 575, 802, 1012
HspAI GCGC 3 cut(s) 1053, 1099, 1101
KpnI GGTACC 1 cut(s) 1145
KspAI GTTAAC 1 cut(s) 85
Kzo9I GATC 5 cut(s) 205, 235, 716, 781, 909
LmnI GCTCC 2 cut(s) 142, 648
Lsp1109I GCAGC 7 cut(s) 241, 338, 416, 422, 503, 618, 949
LweI GCATC 2 cut(s) 626, 978
MaeI CTAG 5 cut(s) 119, 548, 699, 774, 1091
MaeIII GTNAC 3 cut(s) 355, 694, 1126
MalI GATC 5 cut(s) 207, 237, 718, 783, 911
MbiI CCGCTC 1 cut(s) 456
MboI GATC 5 cut(s) 205, 235, 716, 781, 909
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 4 cut(s) 205, 235, 781, 909
MhlI GDGCHC 1 cut(s) 413
MluCI AATT 4 cut(s) 294, 511, 565, 953
MlyI GAGTC 2 cut(s) 32, 776
Mph1103I ATGCAT 1 cut(s) 619
MroXI GAANNNNTTC 1 cut(s) 1086
MseI TTAA 3 cut(s) 84, 95, 579
MslI CAYNNNNRTG 3 cut(s) 78, 797, 1109
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 5 cut(s) 341, 473, 610, 822, 1122
MspR9I CCNGG 5 cut(s) 473, 474, 729, 823, 1123
MunI CAATTG 1 cut(s) 294
Mva1269I GAATGC 2 cut(s) 392, 619
MvaI CCWGG 1 cut(s) 729
MvnI CGCG 1 cut(s) 1101
MwoI GCNNNNNNNGC 7 cut(s) 305, 335, 368, 606, 623, 925, 934
NciI CCSGG 4 cut(s) 473, 474, 823, 1123
NdeII GATC 5 cut(s) 205, 235, 716, 781, 909
NlaIII CATG 7 cut(s) 83, 425, 451, 557, 575, 802, 1012
NlaIV GGNNCC 5 cut(s) 138, 339, 345, 911, 1143
NmeAIII GCCGAG 3 cut(s) 329, 477, 790
NmuCI GTSAC 1 cut(s) 694
NsiI ATGCAT 1 cut(s) 619
NspI RCATGY 3 cut(s) 425, 557, 802
NspV TTCGAA 2 cut(s) 365, 830
PauI GCGCGC 1 cut(s) 1099
PciI ACATGT 2 cut(s) 553, 798
PctI GAATGC 2 cut(s) 392, 619
PdmI GAANNNNTTC 1 cut(s) 1086
PfeI GAWTC 2 cut(s) 184, 397
PkrI GCNGC 9 cut(s) 256, 287, 328, 406, 437, 493, 608, 763, 939
PleI GAGTC 2 cut(s) 32, 775
PpsI GAGTC 2 cut(s) 32, 775
PscI ACATGT 2 cut(s) 553, 798
PshBI ATTAAT 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 727
PspGI CCWGG 1 cut(s) 727
PspN4I GGNNCC 5 cut(s) 138, 339, 345, 911, 1143
PstNI CAGNNNCTG 2 cut(s) 257, 629
PsuI RGATCY 4 cut(s) 205, 235, 781, 909
PteI GCGCGC 1 cut(s) 1099
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 5 cut(s) 426, 552, 558, 680, 1143
RsaNI GTAC 5 cut(s) 425, 551, 557, 679, 1142
RseI CAYNNNNRTG 3 cut(s) 78, 797, 1109
SaqAI TTAA 3 cut(s) 84, 95, 579
SatI GCNGC 9 cut(s) 255, 286, 327, 405, 436, 492, 607, 762, 938
Sau3AI GATC 5 cut(s) 205, 235, 716, 781, 909
SchI GAGTC 2 cut(s) 32, 776
ScrFI CCNGG 5 cut(s) 473, 474, 729, 823, 1123
SduI GDGCHC 1 cut(s) 413
SfaNI GCATC 2 cut(s) 626, 978
SfuI TTCGAA 2 cut(s) 365, 830
SmaI CCCGGG 1 cut(s) 474
SmiMI CAYNNNNRTG 3 cut(s) 78, 797, 1109
SpeI ACTAGT 2 cut(s) 547, 698
Sse9I AATT 4 cut(s) 294, 511, 565, 953
SsiI CCGC 8 cut(s) 285, 371, 438, 456, 713, 753, 761, 838
SspMI CTAG 5 cut(s) 119, 548, 699, 774, 1091
StyD4I CCNGG 5 cut(s) 471, 472, 727, 821, 1121
StyI CCWWGG 1 cut(s) 272
TaqI TCGA 5 cut(s) 182, 365, 382, 804, 830
TasI AATT 4 cut(s) 294, 511, 565, 953
TatI WGTACW 2 cut(s) 424, 550
TauI GCSGC 2 cut(s) 288, 764
TfiI GAWTC 2 cut(s) 184, 397
Tru1I TTAA 3 cut(s) 84, 95, 579
Tru9I TTAA 3 cut(s) 84, 95, 579
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 694
TseI GCWGC 7 cut(s) 254, 326, 404, 435, 491, 606, 937
Tsp45I GTSAC 1 cut(s) 694
TspDTI ATGAA 3 cut(s) 62, 436, 1025
TspGWI ACGGA 1 cut(s) 697
TspMI CCCGGG 1 cut(s) 472
TspRI CASTG 1 cut(s) 418
VspI ATTAAT 1 cut(s) 95
XapI RAATTY 1 cut(s) 511
XbaI TCTAGA 1 cut(s) 1090
XceI RCATGY 3 cut(s) 425, 557, 802
XmaI CCCGGG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 1115
XmnI GAANNNNTTC 1 cut(s) 1086
XspI CTAG 5 cut(s) 119, 548, 699, 774, 1091
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.