Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010518

Physical Location & Seq

Genomic Coordinates Reverse (-)

12084535 .. 12085497

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1146300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAACAGAGAGGGCGAGATAATAAGGTCATAGGGAGGATGCCAAGCACCCTGACCTATACTCCTCCTCCTCCCCATAGGGATTCTTCTTCCTCCAAGCTTTCTTCTTCTCCGGCTTTCTCCTCAGCGGGACATCATGGTAATAACACCATACTCTTCACCCACCCACCTCATCAAACCCTAGATAGATCAAGAAGAGATCCTGACCCAAACCCAGATCTAGTTCCATCTCCACTTGTTGTCACCCCAAGTGCAACAACAACAATTGCTAGTGGAACAAATTTCAAAGCACCAGCAGCTCCACCGCCACCGCCGCCAAGTGCAGCAGCATCAAGAATTAGGTATAGGGAGTGTTTGAAAAACTACGCTGCCAACAGCGGCGGCCACGTGCTCGATGGGTGCGGAGAGTTCATGCCGAGCGGAGATGAAGACACTCCGGGAGCACTAAAATGCGCAGCTTGCGAGTGTCATAGAAATTTTCACAGAAAAGAGATCGATGGCGAATATGTGTCAAATAATTACTATGTCATAAACCACCAACAACACAACAGCCGAAGAGACTCGGCGCTTACAAGATTGCCGGTGCTAGCCTCCTCACCACGGGGGCTTCCTGTTTATCATTCTATGGCTGGAGGGCCCAGTCCACCGATGATGATGACCTTTGGCGGCGGTGGTGGGGTGGTTGCGGAGTCATCGAGTGAGGATCTCAACATGAACAATAAATTGTTTCGCGGTGCAAATTATGCGGAGGAGGCACAAGGTTCGAAGAAGCGGTTTAGGACGAAGTTCAGTCAAGAGCAGAAGGAGAAGATGACGGAGGTGGCGGAGAAGTTGGGGTGGAGGATCCAGAAGCATGATGAGCAAGAAGTGCAGAAGTTGTGTTCTGAAGTGGGTATAAAGAGGCAGGTGTTCAAGGTATGGATGCACAATAACAAAAAAGCCATGAAGAAGAAGCAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

321

Amino Acids

35.28

Weight (kDa)

9.44

Isoelectric Point (pI)

67.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZF-HD_dimer	PF04770	113 - 165	2.4e-29	ZF-HD protein dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010518)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13170 FvH4_1g13170 FvH4_1g13170 FvH4_1g13170
malus_domestica	MD02G1146300.v1.1 MD15G1260600.v1.1
prunus_persica	Prupe.7G155700_v2.0.a1 Prupe.7G155700_v2.0.a1 Prupe.7G155700_v2.0.a1
pyrus_communis	pycom02g11590
rosa_chinensis	RchiOBHm_Chr2g0101391
rosa_laevigata	RLG00000017074
rosa_multiflora	Rmu_sc0006128.1_g000009
rosa_roxburghii	Rroxscaffold_2G00141340
rosa_rugosa	Rorug02G0098600 Rorug02G0098700
rosa_samantha	Rh2AG146500 Rh2BG151800 Rh2CG152500 Rh2DG151900
rosa_wichuraiana	Rw2G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	895
Acc16I	TGCGCA	1 cut(s)	454
Acc36I	ACCTGC	1 cut(s)	895
AccBSI	CCGCTC	1 cut(s)	420
AccII	CGCG	1 cut(s)	732
AclWI	GGATC	4 cut(s)	194, 711, 838, 851
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	2 cut(s)	280, 475
AcuI	CTGAAG	1 cut(s)	906
AcvI	CACGTG	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	600
AgsI	TTSAA	3 cut(s)	286, 358, 913
AluBI	AGCT	3 cut(s)	100, 299, 458
AluI	AGCT	3 cut(s)	100, 299, 458
Alw21I	GWGCWC	2 cut(s)	393, 445
Alw26I	GTCTC	1 cut(s)	552
AlwI	GGATC	4 cut(s)	194, 711, 838, 851
AoxI	GGCC	2 cut(s)	382, 635
ApaI	GGGCCC	1 cut(s)	639
ApeKI	GCWGC	5 cut(s)	296, 323, 326, 368, 455
ApoI	RAATTY	2 cut(s)	280, 475
AspLEI	GCGC	2 cut(s)	455, 568
AspS9I	GGNCC	2 cut(s)	635, 636
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	3 cut(s)	151, 235, 588
AsuII	TTCGAA	1 cut(s)	764
AsuNHI	GCTAGC	1 cut(s)	586
BaeGI	GKGCMC	1 cut(s)	639
BamHI	GGATCC	1 cut(s)	843
BanII	GRGCYC	1 cut(s)	639
BbrPI	CACGTG	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	2 cut(s)	393, 445
BbvCI	CCTCAGC	1 cut(s)	124
BbvI	GCAGC	5 cut(s)	308, 335, 338, 355, 467
BccI	CCATC	3 cut(s)	235, 389, 491
BcgI	CGANNNNNNTGC	2 cut(s)	744, 778
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	552
BfaI	CTAG	4 cut(s)	182, 221, 270, 587
BfoI	RGCGCY	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	895
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	9 cut(s)	297, 314, 324, 327, 369, 379, 382, 456, 667
BlsI	GCNGC	9 cut(s)	298, 315, 325, 328, 370, 380, 383, 457, 668
Bme1390I	CCNGG	1 cut(s)	438
BmgT120I	GGNCC	2 cut(s)	635, 636
BmiI	GGNNCC	2 cut(s)	637, 845
BmrFI	CCNGG	1 cut(s)	438
BmrI	ACTGGG	1 cut(s)	633
BmsI	GCATC	3 cut(s)	30, 338, 912
BmtI	GCTAGC	1 cut(s)	590
BmuI	ACTGGG	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	124
Bpu14I	TTCGAA	1 cut(s)	764
BpuMI	CCSGG	1 cut(s)	438
Bsa29I	ATCGAT	1 cut(s)	495
BsaAI	YACGTR	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	599
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 52, 76, 82
Bsc4I	CCNNNNNNNGG	1 cut(s)	600
Bse118I	RCCGGY	1 cut(s)	580
Bse1I	ACTGG	1 cut(s)	639
BseCI	ATCGAT	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	599
BseGI	GGATG	2 cut(s)	45, 927
BseLI	CCNNNNNNNGG	1 cut(s)	600
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	639
BseRI	GAGGAG	6 cut(s)	54, 57, 60, 112, 583, 764
BseSI	GKGCMC	1 cut(s)	639
BseXI	GCAGC	5 cut(s)	308, 335, 338, 355, 467
BsgI	GTGCAG	2 cut(s)	342, 890
Bsh1236I	CGCG	1 cut(s)	732
BshFI	GGCC	2 cut(s)	384, 637
BshVI	ATCGAT	1 cut(s)	495
BsiHKAI	GWGCWC	2 cut(s)	393, 445
BsiSI	CCGG	3 cut(s)	113, 437, 581
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	600
BsmAI	GTCTC	1 cut(s)	552
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	384, 637
Bsp119I	TTCGAA	1 cut(s)	764
Bsp120I	GGGCCC	1 cut(s)	635
Bsp1286I	GDGCHC	3 cut(s)	393, 445, 639
Bsp143I	GATC	6 cut(s)	188, 199, 217, 492, 703, 843
BspANI	GGCC	2 cut(s)	384, 637
BspCNI	CTCAG	1 cut(s)	137
BspDI	ATCGAT	1 cut(s)	495
BspFNI	CGCG	1 cut(s)	732
BspLI	GGNNCC	2 cut(s)	637, 845
BspMI	ACCTGC	1 cut(s)	895
BspOI	GCTAGC	1 cut(s)	590
BspPI	GGATC	4 cut(s)	194, 711, 838, 851
BspT104I	TTCGAA	1 cut(s)	764
BsrBI	CCGCTC	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	639
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	1 cut(s)	599
BssMI	GATC	6 cut(s)	188, 199, 217, 492, 703, 843
Bst6I	CTCTTC	3 cut(s)	161, 190, 550
BstAPI	GCANNNNNTGC	2 cut(s)	743, 868
BstBAI	YACGTR	1 cut(s)	388
BstBI	TTCGAA	1 cut(s)	764
BstC8I	GCNNGC	2 cut(s)	460, 588
BstDEI	CTNAG	1 cut(s)	124
BstDSI	CCRYGG	1 cut(s)	599
BstF5I	GGATG	2 cut(s)	45, 927
BstFNI	CGCG	1 cut(s)	732
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	2 cut(s)	455, 568
BstKTI	GATC	6 cut(s)	191, 202, 220, 495, 706, 846
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	6 cut(s)	188, 199, 217, 492, 703, 843
BstMWI	GCNNNNNNNGC	7 cut(s)	296, 313, 459, 743, 752, 859, 868
BstSCI	CCNGG	1 cut(s)	436
BstSLI	GKGCMC	1 cut(s)	639
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	5 cut(s)	308, 335, 338, 355, 467
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	4 cut(s)	199, 217, 703, 843
BstYI	RGATCY	4 cut(s)	199, 217, 703, 843
Bsu15I	ATCGAT	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	384, 637
BsuTUI	ATCGAT	1 cut(s)	495
BtgI	CCRYGG	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	45, 927
BveI	ACCTGC	1 cut(s)	895
Cac8I	GCNNGC	2 cut(s)	460, 588
CfoI	GCGC	2 cut(s)	455, 568
Cfr10I	RCCGGY	1 cut(s)	580
Cfr13I	GGNCC	2 cut(s)	635, 636
ClaI	ATCGAT	1 cut(s)	495
CviAII	CATG	5 cut(s)	137, 412, 712, 854, 943
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	6 cut(s)	190, 201, 219, 494, 705, 845
DpnII	GATC	6 cut(s)	188, 199, 217, 492, 703, 843
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	3 cut(s)	161, 190, 550
EarI	CTCTTC	3 cut(s)	161, 190, 550
EciI	GGCGGA	1 cut(s)	839
Eco24I	GRGCYC	1 cut(s)	639
Eco57I	CTGAAG	1 cut(s)	906
Eco72I	CACGTG	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	635
EcoT38I	GRGCYC	1 cut(s)	639
FaeI	CATG	5 cut(s)	140, 415, 715, 857, 946
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	5 cut(s)	136, 411, 711, 853, 942
FauI	CCCGC	1 cut(s)	121
Fnu4HI	GCNGC	9 cut(s)	297, 314, 324, 327, 369, 379, 382, 456, 667
FokI	GGATG	2 cut(s)	52, 934
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	9 cut(s)	297, 314, 324, 327, 369, 379, 382, 456, 667
FspBI	CTAG	4 cut(s)	182, 221, 270, 587
FspI	TGCGCA	1 cut(s)	454
GlaI	GCGC	2 cut(s)	454, 567
GluI	GCNGC	9 cut(s)	297, 314, 324, 327, 369, 379, 382, 456, 667
GsuI	CTGGAG	1 cut(s)	651
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	2 cut(s)	384, 637
HapII	CCGG	3 cut(s)	113, 437, 581
HhaI	GCGC	2 cut(s)	455, 568
Hin1II	CATG	5 cut(s)	140, 415, 715, 857, 946
Hin6I	GCGC	2 cut(s)	453, 566
HinP1I	GCGC	2 cut(s)	453, 566
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	3 cut(s)	83, 560, 689
HpaII	CCGG	3 cut(s)	113, 437, 581
HphI	GGTGA	3 cut(s)	151, 235, 588
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	1 cut(s)	886
Hpy188III	TCNNGA	5 cut(s)	192, 203, 333, 794, 847
Hpy8I	GTNNAC	1 cut(s)	644
HpyAV	CCTTC	1 cut(s)	796
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	5 cut(s)	254, 323, 737, 871, 925
HpyF10VI	GCNNNNNNNGC	7 cut(s)	296, 313, 459, 743, 752, 859, 868
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	5 cut(s)	140, 415, 715, 857, 946
HspAI	GCGC	2 cut(s)	453, 566
Kzo9I	GATC	6 cut(s)	188, 199, 217, 492, 703, 843
LmnI	GCTCC	2 cut(s)	304, 440
Lsp1109I	GCAGC	5 cut(s)	308, 335, 338, 355, 467
LweI	GCATC	3 cut(s)	30, 338, 912
MaeI	CTAG	4 cut(s)	182, 221, 270, 587
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	6 cut(s)	190, 201, 219, 494, 705, 845
MbiI	CCGCTC	1 cut(s)	420
MboI	GATC	6 cut(s)	188, 199, 217, 492, 703, 843
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	4 cut(s)	199, 217, 703, 843
MhlI	GDGCHC	3 cut(s)	393, 445, 639
MluCI	AATT	7 cut(s)	264, 280, 336, 475, 517, 722, 739
MlyI	GAGTC	2 cut(s)	554, 698
MslI	CAYNNNNRTG	1 cut(s)	448
MspA1I	CMGCKG	2 cut(s)	128, 378
MspI	CCGG	3 cut(s)	113, 437, 581
MspR9I	CCNGG	1 cut(s)	438
MunI	CAATTG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	7 cut(s)	296, 313, 459, 743, 752, 859, 868
NciI	CCSGG	1 cut(s)	438
NdeII	GATC	6 cut(s)	188, 199, 217, 492, 703, 843
NheI	GCTAGC	1 cut(s)	586
NlaIII	CATG	5 cut(s)	140, 415, 715, 857, 946
NlaIV	GGNNCC	2 cut(s)	637, 845
NmeAIII	GCCGAG	2 cut(s)	441, 542
NmuCI	GTSAC	1 cut(s)	241
NsbI	TGCGCA	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	764
PaqCI	CACCTGC	1 cut(s)	895
PfeI	GAWTC	1 cut(s)	83
PfoI	TCCNGGA	1 cut(s)	436
PkrI	GCNGC	9 cut(s)	298, 315, 325, 328, 370, 380, 383, 457, 668
PleI	GAGTC	2 cut(s)	554, 697
PmaCI	CACGTG	1 cut(s)	388
PmlI	CACGTG	1 cut(s)	388
PpsI	GAGTC	2 cut(s)	554, 697
Ppu21I	YACGTR	1 cut(s)	388
PspCI	CACGTG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	637, 845
PspOMI	GGGCCC	1 cut(s)	635
PspPI	GGNCC	2 cut(s)	635, 636
PsuI	RGATCY	4 cut(s)	199, 217, 703, 843
RseI	CAYNNNNRTG	1 cut(s)	448
SatI	GCNGC	9 cut(s)	297, 314, 324, 327, 369, 379, 382, 456, 667
Sau3AI	GATC	6 cut(s)	188, 199, 217, 492, 703, 843
Sau96I	GGNCC	2 cut(s)	635, 636
SchI	GAGTC	2 cut(s)	554, 698
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	3 cut(s)	393, 445, 639
SfaNI	GCATC	3 cut(s)	30, 338, 912
SfuI	TTCGAA	1 cut(s)	764
SmiMI	CAYNNNNRTG	1 cut(s)	448
Sse9I	AATT	7 cut(s)	264, 280, 336, 475, 517, 722, 739
SspMI	CTAG	4 cut(s)	182, 221, 270, 587
StyD4I	CCNGG	1 cut(s)	436
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	4 cut(s)	393, 495, 695, 764
TasI	AATT	7 cut(s)	264, 280, 336, 475, 517, 722, 739
TauI	GCSGC	4 cut(s)	316, 381, 384, 669
TfiI	GAWTC	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	5 cut(s)	296, 323, 326, 368, 455
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	4 cut(s)	400, 441, 728, 959
TspGWI	ACGGA	1 cut(s)	830
XapI	RAATTY	2 cut(s)	280, 475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XspI	CTAG	4 cut(s)	182, 221, 270, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.