Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014638

Physical Location & Seq

Genomic Coordinates Reverse (-)

7320105 .. 7321304

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCGGTCGTCTGTAGTCATTGCATCGCTCAAACCAGAAGAAACGCAGTTATGCCTCCCCCATCATGCCAAGCCCCAAGCGTTAACAAAGCGTTAACAAATGGCCTCACTACTGAGAAGCACGCAAGGCCGGATTACGCGGCGGCTAGTTGGGGCGCCACCGTAGTTGACCATTCGGAGCCTCTTCTCATGAAGGGCCGCTATCAATCAAGCACCAAACTAATGAATGAGGTATGCAAAAGCTGGCAGGGGTCTGAACCCTCCCAGACCCAAACACAATTCCGCCACTGGTTGAGCCCTAGTTTCGGAGAGCCGGGGCGGTGTTTTGCATTGAAAGGGAGTCGTGGTTTTGTTGTGGTCAAGCTAATGGAGCCGATTATGCCGGATGCTATTACTATTGAACATGTTTTGGGTAGCGTTGTTGATGATGCTCCTAAGGATTGCCGTGTTACAGCTTGGATGCAACATGGGATGTATGAACCGTATAGGAATGAGTTTGTTTTGGCCGAGTTTAGTTACGATGTTGGGAAGAGAAATCTTCGTGGGAAGATAAATGTTAGGACGTTTGGTGTGTCCAAATCGGTGGTGGCAGCCGACGATGAGGCCGTCGCTAACATGGTGAAGTTAGAGTTTGGATCCAACCATGGAAGGCTGAACTCTACCTGCATATATAGACTCCGAGTTCATGGTCATAAACCTCGTTTGTATAGTCCCTTAATCAAAGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0005819 GO:0005856 GO:0006996 GO:0006997 GO:0007049 GO:0007059 GO:0007127 GO:0008104 GO:0008150 GO:0008360 GO:0009524 GO:0009987 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031967 GO:0031975 GO:0031984 GO:0032878 GO:0033036 GO:0033365 GO:0034397 GO:0034398 GO:0034504 GO:0034613 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043495 GO:0043621 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044821 GO:0045132 GO:0045141 GO:0045143 GO:0048285 GO:0050000 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051276 GO:0051291 GO:0051303 GO:0051321 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065007 GO:0065008 GO:0070192 GO:0070197 GO:0070727 GO:0071840 GO:0090220 GO:0090435 GO:0097240 GO:0098813 GO:0098827 GO:0140013 GO:1903046 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

244

Amino Acids

27.02

Weight (kDa)

9.18

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sad1_UNC	PF07738	98 - 231	2.4e-25	Sad1 / UNC-like C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13360
rosa_chinensis	RchiOBHm_Chr2g0101131 RchiOBHm_Chr2g0101681
rosa_laevigata	RLG00000017096
rosa_multiflora	Rmu_sc0011183.1_g000009
rosa_roxburghii	Rroxscaffold_2G00141100
rosa_rugosa	Rorug02G0100700 Rorug02G0101400 Rorug02G0101400
rosa_samantha	Rh2AG143900 Rh2BG148900 Rh2BG154300 Rh2CG150000 Rh2CG150100 Rh2CG154600 Rh2DG149400
rosa_wichuraiana	Rw2G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	155
AccII	CGCG	1 cut(s)	140
AciI	CCGC	6 cut(s)	5, 140, 143, 199, 283, 319
AclWI	GGATC	2 cut(s)	630, 643
AcoI	YGGCCR	1 cut(s)	504
AcyI	GRCGYC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	2 cut(s)	334, 401
AluBI	AGCT	4 cut(s)	243, 364, 455, 728
AluI	AGCT	4 cut(s)	243, 364, 455, 728
AlwI	GGATC	2 cut(s)	630, 643
AoxI	GGCC	5 cut(s)	103, 128, 196, 504, 603
ApeKI	GCWGC	1 cut(s)	590
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	631
AxyI	CCTNAGG	1 cut(s)	435
BamHI	GGATCC	1 cut(s)	635
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	602
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	429, 590
BcnI	CCSGG	1 cut(s)	315
BfaI	CTAG	2 cut(s)	147, 300
BfmI	CTRYAG	1 cut(s)	13
BfoI	RGCGCY	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	671
BisI	GCNGC	4 cut(s)	141, 144, 199, 591
BlsI	GCNGC	4 cut(s)	142, 145, 200, 592
Bme1390I	CCNGG	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	4 cut(s)	157, 180, 372, 637
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	4 cut(s)	33, 376, 418, 450
BpuMI	CCSGG	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	314, 643
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	293
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	314, 643
BseGI	GGATG	3 cut(s)	391, 465, 477
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	602
Bsh1236I	CGCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	5 cut(s)	105, 130, 198, 506, 605
BshNI	GGYRCC	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	3 cut(s)	131, 314, 383
BslFI	GGGAC	1 cut(s)	696
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	696
BsnI	GGCC	5 cut(s)	105, 130, 198, 506, 605
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	635
Bsp19I	CCATGG	1 cut(s)	643
BspACI	CCGC	6 cut(s)	5, 140, 143, 199, 283, 319
BspANI	GGCC	5 cut(s)	105, 130, 198, 506, 605
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	157, 180, 372, 637
BspMI	ACCTGC	1 cut(s)	671
BspPI	GGATC	2 cut(s)	630, 643
BspT107I	GGYRCC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	2 cut(s)	314, 643
BssMI	GATC	1 cut(s)	635
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	643
Bst4CI	ACNGT	2 cut(s)	163, 483
Bst6I	CTCTTC	2 cut(s)	189, 524
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	123, 245
BstDEI	CTNAG	3 cut(s)	114, 435, 729
BstDSI	CCRYGG	1 cut(s)	643
BstF5I	GGATG	3 cut(s)	391, 465, 477
BstFNI	CGCG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	1 cut(s)	638
BstMBI	GATC	1 cut(s)	635
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 370, 379
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	13
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	602
BstX2I	RGATCY	1 cut(s)	635
BstXI	CCANNNNNNTGG	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	635
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	5 cut(s)	105, 130, 198, 506, 605
BtgI	CCRYGG	1 cut(s)	643
BtgZI	GCGATG	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	391, 465, 477
BtsIMutI	CAGTG	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	671
Cac8I	GCNNGC	2 cut(s)	123, 245
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	196
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	7 cut(s)	66, 190, 404, 467, 616, 644, 686
DdeI	CTNAG	3 cut(s)	114, 435, 729
DinI	GGCGCC	1 cut(s)	157
DpnI	GATC	1 cut(s)	637
DpnII	GATC	1 cut(s)	635
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	2 cut(s)	189, 524
EarI	CTCTTC	2 cut(s)	189, 524
EciI	GGCGGA	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	643
Eco24I	GRGCYC	1 cut(s)	299
Eco81I	CCTNAGG	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	299
EgeI	GGCGCC	1 cut(s)	157
EheI	GGCGCC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	7 cut(s)	69, 193, 407, 470, 619, 647, 689
FaqI	GGGAC	1 cut(s)	696
FatI	CATG	7 cut(s)	65, 189, 403, 466, 615, 643, 685
Fnu4HI	GCNGC	4 cut(s)	141, 144, 199, 591
FokI	GGATG	3 cut(s)	398, 472, 484
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	4 cut(s)	141, 144, 199, 591
FspBI	CTAG	2 cut(s)	147, 300
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	4 cut(s)	141, 144, 199, 591
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	5 cut(s)	105, 130, 198, 506, 605
HapII	CCGG	3 cut(s)	131, 314, 383
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	7 cut(s)	69, 193, 407, 470, 619, 647, 689
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	3 cut(s)	85, 96, 169
HindII	GTYRAC	3 cut(s)	85, 96, 169
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	2 cut(s)	340, 675
HpaI	GTTAAC	2 cut(s)	85, 96
HpaII	CCGG	3 cut(s)	131, 314, 383
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	3 cut(s)	85, 96, 169
Hpy188I	TCNGA	4 cut(s)	178, 256, 308, 680
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	3 cut(s)	85, 96, 169
Hpy99I	CGWCG	2 cut(s)	599, 611
HpyAV	CCTTC	2 cut(s)	187, 642
HpyCH4III	ACNGT	2 cut(s)	163, 483
HpyCH4IV	ACGT	1 cut(s)	563
HpyCH4V	TGCA	5 cut(s)	24, 237, 329, 463, 666
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 370, 379
HpyF3I	CTNAG	3 cut(s)	114, 435, 729
HpySE526I	ACGT	1 cut(s)	563
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	7 cut(s)	69, 193, 407, 470, 619, 647, 689
HspAI	GCGC	1 cut(s)	156
KasI	GGCGCC	1 cut(s)	155
KspAI	GTTAAC	2 cut(s)	85, 96
Kzo9I	GATC	1 cut(s)	635
LmnI	GCTCC	3 cut(s)	178, 370, 436
LpnPI	CCDG	9 cut(s)	49, 144, 229, 233, 274, 278, 327, 396, 676
Lsp1109I	GCAGC	1 cut(s)	602
LweI	GCATC	4 cut(s)	33, 376, 418, 450
MaeI	CTAG	2 cut(s)	147, 300
MaeII	ACGT	1 cut(s)	563
MaeIII	GTNAC	2 cut(s)	448, 515
MalI	GATC	1 cut(s)	637
MboI	GATC	1 cut(s)	635
MboII	GAAGA	5 cut(s)	51, 176, 530, 541, 559
MflI	RGATCY	1 cut(s)	635
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	1 cut(s)	278
Mly113I	GGCGCC	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	349, 669
MmeI	TCCRAC	1 cut(s)	663
MnlI	CCTC	7 cut(s)	66, 116, 192, 223, 271, 595, 708
MseI	TTAA	3 cut(s)	84, 95, 716
MspI	CCGG	3 cut(s)	131, 314, 383
MspR9I	CCNGG	1 cut(s)	315
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	3 cut(s)	127, 370, 379
NarI	GGCGCC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	643
NdeII	GATC	1 cut(s)	635
NlaIII	CATG	7 cut(s)	69, 193, 407, 470, 619, 647, 689
NlaIV	GGNNCC	4 cut(s)	157, 180, 372, 637
NmeAIII	GCCGAG	1 cut(s)	532
NspI	RCATGY	1 cut(s)	407
PagI	TCATGA	1 cut(s)	189
PciI	ACATGT	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	603
PkrI	GCNGC	4 cut(s)	142, 145, 200, 592
PleI	GAGTC	2 cut(s)	348, 669
PluTI	GGCGCC	1 cut(s)	159
PpsI	GAGTC	2 cut(s)	348, 669
PscI	ACATGT	1 cut(s)	403
PspN4I	GGNNCC	4 cut(s)	157, 180, 372, 637
PspPI	GGNCC	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	635
SaqAI	TTAA	3 cut(s)	84, 95, 716
SatI	GCNGC	4 cut(s)	141, 144, 199, 591
Sau3AI	GATC	1 cut(s)	635
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	2 cut(s)	349, 669
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	8 cut(s)	234, 245, 366, 457, 566, 665, 700, 730
SfaNI	GCATC	4 cut(s)	33, 376, 418, 450
SfcI	CTRYAG	1 cut(s)	13
SfoI	GGCGCC	1 cut(s)	157
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	6 cut(s)	5, 140, 143, 199, 283, 319
SspDI	GGCGCC	1 cut(s)	155
SspMI	CTAG	2 cut(s)	147, 300
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	2 cut(s)	163, 483
TaiI	ACGT	1 cut(s)	566
TasI	AATT	1 cut(s)	278
TauI	GCSGC	3 cut(s)	143, 146, 201
Tru1I	TTAA	3 cut(s)	84, 95, 716
Tru9I	TTAA	3 cut(s)	84, 95, 716
TscAI	CASTG	1 cut(s)	293
TseI	GCWGC	1 cut(s)	590
TspDTI	ATGAA	4 cut(s)	206, 239, 492, 674
TspRI	CASTG	1 cut(s)	293
XceI	RCATGY	1 cut(s)	407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XspI	CTAG	2 cut(s)	147, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.