Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014638

Physical Location & Seq

Genomic Coordinates Reverse (-)

11703405 .. 11704169

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCCGTCACCGCTCAAACTAGAAGACCCGCCCATACACCTTATTCCGCTCCCCCCTCTCGCCAAGCCCCAACCGTTAACAAATCGCCTCATTGGCTCGACTTCCTCATTCTCTCTGCCGTCTTTCTCTTTTTCCTTGAGCTGATCGTCGTTGTTGGGCGCATAGCTATTGACAATAGGGTCGAGAAGGCGATTCAGTTGCACGCCGCGGACGGGCTGGCAAGGGTGGACTACGCCGCGGCTAGCTGGGGCGCTACCGTTGTGGACCATTCTGAGCCTCGTTATGAGAGGGACTGGCCATGGCTTGGCTGGTGGAGTACGTGGTGGAATGGGGTTCACCATAAAGCCATTCATATGTTGAGCCCTAGTTTCGGAGAGCCAGGCCGGTGTTTTCCCTTGAAAGGGAGGAGTGGCTTTGTTGTGGTCAAGCTAAGGGAGCCTATTGTGCCGGAGGCTATTACTATTGAACATGTTTTGGATAGTGATTGCCGTGTCACTGCTTGGTTGCAGCATGATCGGTATGATGGCAAGAAGAATGAGTTTGTTTTGGCCGAGTTCAGTTACGACGTTCGGAAGAGCAATGTTCAGACATTTGGTGTGTCGGGATCGGTGGCGAAGGCCCGCGATGAGGCCATTGTTAACATGGTGGAGTTGCAATTTGGATCCAACAATGGAAGCCCCGTGTCTACTTGCATATATCGGCTCAGAGTTCATGGCCATAAACCTCGATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0005819 GO:0005856 GO:0006996 GO:0006997 GO:0007049 GO:0007059 GO:0007127 GO:0008104 GO:0008150 GO:0008360 GO:0009524 GO:0009987 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031967 GO:0031975 GO:0031984 GO:0032878 GO:0033036 GO:0033365 GO:0034397 GO:0034398 GO:0034504 GO:0034613 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043495 GO:0043621 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044821 GO:0045132 GO:0045141 GO:0045143 GO:0048285 GO:0050000 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051276 GO:0051291 GO:0051303 GO:0051321 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065007 GO:0065008 GO:0070192 GO:0070197 GO:0070727 GO:0071840 GO:0090220 GO:0090435 GO:0097240 GO:0098813 GO:0098827 GO:0140013 GO:1903046 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

244

Amino Acids

27.5

Weight (kDa)

9.01

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sad1_UNC	PF07738	113 - 240	3e-25	Sad1 / UNC-like C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13360
rosa_chinensis	RchiOBHm_Chr2g0101131 RchiOBHm_Chr2g0101681
rosa_laevigata	RLG00000017096
rosa_multiflora	Rmu_sc0011183.1_g000009
rosa_roxburghii	Rroxscaffold_2G00141100
rosa_rugosa	Rorug02G0100700 Rorug02G0101400 Rorug02G0101400
rosa_samantha	Rh2AG143900 Rh2BG148900 Rh2BG154300 Rh2CG150000 Rh2CG150100 Rh2CG154600 Rh2DG149400
rosa_wichuraiana	Rw2G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccBSI	CCGCTC	2 cut(s)	14, 50
AccI	GTMKAC	1 cut(s)	686
AccII	CGCG	3 cut(s)	209, 239, 624
AciI	CCGC	8 cut(s)	12, 30, 48, 207, 209, 237, 239, 622
AclWI	GGATC	3 cut(s)	613, 657, 670
AcoI	YGGCCR	4 cut(s)	3, 296, 549, 715
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	6 cut(s)	213, 305, 371, 401, 402, 628
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	2 cut(s)	400, 467
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	4 cut(s)	142, 167, 246, 430
AluI	AGCT	4 cut(s)	142, 167, 246, 430
AlwI	GGATC	3 cut(s)	613, 657, 670
AoxI	GGCC	7 cut(s)	3, 296, 382, 549, 618, 630, 715
ApeKI	GCWGC	1 cut(s)	508
AspLEI	GCGC	2 cut(s)	162, 254
AspS9I	GGNCC	2 cut(s)	265, 619
AsuHPI	GGTGA	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	265
BalI	TGGCCA	2 cut(s)	298, 717
BamHI	GGATCC	1 cut(s)	662
BanII	GRGCYC	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	2 cut(s)	104, 474
BcgI	CGANNNNNNTGC	4 cut(s)	181, 215, 497, 531
BciT130I	CCWGG	1 cut(s)	381
BfaI	CTAG	3 cut(s)	21, 243, 366
BfoI	RGCGCY	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	94
BisI	GCNGC	4 cut(s)	207, 237, 240, 509
BlsI	GCNGC	4 cut(s)	208, 238, 241, 510
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	265, 619
BmiI	GGNNCC	2 cut(s)	438, 664
BmrFI	CCNGG	1 cut(s)	381
BmtI	GCTAGC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	207, 237, 299
Bsc4I	CCNNNNNNNGG	6 cut(s)	213, 305, 371, 401, 402, 628
Bse118I	RCCGGY	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	586
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	207, 237, 299
BseLI	CCNNNNNNNGG	6 cut(s)	213, 305, 371, 401, 402, 628
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	2 cut(s)	264, 718
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	520
BseYI	CCCAGC	1 cut(s)	246
Bsh1236I	CGCG	3 cut(s)	209, 239, 624
Bsh1285I	CGRYCG	1 cut(s)	731
BshFI	GGCC	7 cut(s)	5, 298, 384, 551, 620, 632, 717
BsiEI	CGRYCG	1 cut(s)	731
BsiSI	CCGG	2 cut(s)	385, 449
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	6 cut(s)	213, 305, 371, 401, 402, 628
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	7 cut(s)	5, 298, 384, 551, 620, 632, 717
Bsp1286I	GDGCHC	1 cut(s)	365
Bsp143I	GATC	5 cut(s)	144, 514, 605, 662, 728
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	8 cut(s)	12, 30, 48, 207, 209, 237, 239, 622
BspANI	GGCC	7 cut(s)	5, 298, 384, 551, 620, 632, 717
BspCNI	CTCAG	2 cut(s)	265, 717
BspFNI	CGCG	3 cut(s)	209, 239, 624
BspLI	GGNNCC	2 cut(s)	438, 664
BspOI	GCTAGC	1 cut(s)	246
BspPI	GGATC	3 cut(s)	613, 657, 670
BspQI	GCTCTTC	1 cut(s)	569
BsrBI	CCGCTC	2 cut(s)	14, 50
BsrDI	GCAATG	1 cut(s)	586
BsrFI	RCCGGY	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	3 cut(s)	207, 237, 299
BssMI	GATC	5 cut(s)	144, 514, 605, 662, 728
BssT1I	CCWWGG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	76, 259
Bst6I	CTCTTC	1 cut(s)	569
BstBAI	YACGTR	1 cut(s)	321
BstC8I	GCNNGC	4 cut(s)	204, 219, 244, 622
BstDEI	CTNAG	3 cut(s)	273, 431, 704
BstDSI	CCRYGG	3 cut(s)	207, 237, 299
BstFNI	CGCG	3 cut(s)	209, 239, 624
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	2 cut(s)	162, 254
BstKTI	GATC	5 cut(s)	147, 517, 608, 665, 731
BstMBI	GATC	5 cut(s)	144, 514, 605, 662, 728
BstMCI	CGRYCG	1 cut(s)	731
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 94, 436, 445
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	379
BstUI	CGCG	3 cut(s)	209, 239, 624
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	662
BsuRI	GGCC	7 cut(s)	5, 298, 384, 551, 620, 632, 717
BtgI	CCRYGG	3 cut(s)	207, 237, 299
BtgZI	GCGATG	1 cut(s)	639
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	4 cut(s)	204, 219, 244, 622
CfoI	GCGC	2 cut(s)	162, 254
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	265, 619
Cfr42I	CCGCGG	2 cut(s)	210, 240
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	5 cut(s)	300, 470, 512, 643, 713
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	3 cut(s)	273, 431, 704
DpnI	GATC	5 cut(s)	146, 516, 607, 664, 730
DpnII	GATC	5 cut(s)	144, 514, 605, 662, 728
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	4 cut(s)	3, 296, 549, 715
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	5 cut(s)	303, 473, 515, 646, 716
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	5 cut(s)	299, 469, 511, 642, 712
FauI	CCCGC	2 cut(s)	37, 629
FauNDI	CATATG	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	686
Fnu4HI	GCNGC	4 cut(s)	207, 237, 240, 509
FriOI	GRGCYC	1 cut(s)	365
Fsp4HI	GCNGC	4 cut(s)	207, 237, 240, 509
FspBI	CTAG	3 cut(s)	21, 243, 366
GlaI	GCGC	2 cut(s)	161, 253
GluI	GCNGC	4 cut(s)	207, 237, 240, 509
GsaI	CCCAGC	1 cut(s)	250
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	7 cut(s)	5, 298, 384, 551, 620, 632, 717
HapII	CCGG	2 cut(s)	385, 449
HhaI	GCGC	2 cut(s)	162, 254
Hin1II	CATG	5 cut(s)	303, 473, 515, 646, 716
Hin6I	GCGC	2 cut(s)	160, 252
HinP1I	GCGC	2 cut(s)	160, 252
HincII	GTYRAC	2 cut(s)	79, 640
HindII	GTYRAC	2 cut(s)	79, 640
HinfI	GANTC	1 cut(s)	193
HpaI	GTTAAC	2 cut(s)	79, 640
HpaII	CCGG	2 cut(s)	385, 449
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	6 cut(s)	79, 229, 265, 337, 640, 687
Hpy188I	TCNGA	5 cut(s)	274, 374, 573, 588, 707
Hpy188III	TCNNGA	2 cut(s)	184, 603
Hpy8I	GTNNAC	6 cut(s)	79, 229, 265, 337, 640, 687
Hpy99I	CGWCG	2 cut(s)	152, 569
HpyAV	CCTTC	2 cut(s)	181, 610
HpyCH4III	ACNGT	2 cut(s)	76, 259
HpyCH4IV	ACGT	2 cut(s)	320, 567
HpyCH4V	TGCA	4 cut(s)	202, 508, 655, 693
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 94, 436, 445
HpyF3I	CTNAG	3 cut(s)	273, 431, 704
HpySE526I	ACGT	2 cut(s)	320, 567
Hsp92II	CATG	5 cut(s)	303, 473, 515, 646, 716
HspAI	GCGC	2 cut(s)	160, 252
KspAI	GTTAAC	2 cut(s)	79, 640
KspI	CCGCGG	2 cut(s)	210, 240
Kzo9I	GATC	5 cut(s)	144, 514, 605, 662, 728
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	2 cut(s)	55, 436
LpnPI	CCDG	8 cut(s)	203, 232, 280, 295, 366, 393, 398, 462
Lsp1109I	GCAGC	1 cut(s)	520
MaeI	CTAG	3 cut(s)	21, 243, 366
MaeII	ACGT	2 cut(s)	320, 567
MaeIII	GTNAC	3 cut(s)	7, 493, 560
MalI	GATC	5 cut(s)	146, 516, 607, 664, 730
MbiI	CCGCTC	2 cut(s)	14, 50
MboI	GATC	5 cut(s)	144, 514, 605, 662, 728
MboII	GAAGA	3 cut(s)	36, 544, 586
MflI	RGATCY	1 cut(s)	662
MhlI	GDGCHC	1 cut(s)	365
MlsI	TGGCCA	2 cut(s)	298, 717
MluCI	AATT	1 cut(s)	656
MluNI	TGGCCA	2 cut(s)	298, 717
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	9 cut(s)	67, 99, 116, 282, 288, 399, 445, 622, 735
Mox20I	TGGCCA	2 cut(s)	298, 717
MscI	TGGCCA	2 cut(s)	298, 717
MseI	TTAA	2 cut(s)	78, 639
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	2 cut(s)	298, 717
MspA1I	CMGCKG	2 cut(s)	209, 239
MspI	CCGG	2 cut(s)	385, 449
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	3 cut(s)	209, 239, 624
MwoI	GCNNNNNNNGC	4 cut(s)	11, 94, 436, 445
NcoI	CCATGG	1 cut(s)	299
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	5 cut(s)	144, 514, 605, 662, 728
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	5 cut(s)	303, 473, 515, 646, 716
NlaIV	GGNNCC	2 cut(s)	438, 664
NmeAIII	GCCGAG	1 cut(s)	577
NmuCI	GTSAC	2 cut(s)	7, 493
NspI	RCATGY	1 cut(s)	473
PciI	ACATGT	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	569
PfeI	GAWTC	1 cut(s)	193
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	208, 238, 241, 510
Ple19I	CGATCG	1 cut(s)	731
Ppu21I	YACGTR	1 cut(s)	321
PscI	ACATGT	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	438, 664
PspPI	GGNCC	2 cut(s)	265, 619
PsuI	RGATCY	1 cut(s)	662
PvuI	CGATCG	1 cut(s)	731
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	353
SacII	CCGCGG	2 cut(s)	210, 240
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	78, 639
SatI	GCNGC	4 cut(s)	207, 237, 240, 509
Sau3AI	GATC	5 cut(s)	144, 514, 605, 662, 728
Sau96I	GGNCC	2 cut(s)	265, 619
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	365
SetI	ASST	8 cut(s)	43, 144, 169, 248, 323, 432, 570, 727
Sfr303I	CCGCGG	2 cut(s)	210, 240
SgrBI	CCGCGG	2 cut(s)	210, 240
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	656
SsiI	CCGC	8 cut(s)	12, 30, 48, 207, 209, 237, 239, 622
SspMI	CTAG	3 cut(s)	21, 243, 366
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	2 cut(s)	76, 259
TaiI	ACGT	2 cut(s)	323, 570
TaqI	TCGA	3 cut(s)	99, 183, 727
TasI	AATT	1 cut(s)	656
TauI	GCSGC	3 cut(s)	209, 239, 242
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	2 cut(s)	78, 639
Tru9I	TTAA	2 cut(s)	78, 639
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	2 cut(s)	7, 493
TseI	GCWGC	1 cut(s)	508
Tsp45I	GTSAC	2 cut(s)	7, 493
TspDTI	ATGAA	2 cut(s)	341, 701
TspRI	CASTG	1 cut(s)	502
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	265
XceI	RCATGY	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	2 cut(s)	306, 640
XmiI	GTMKAC	1 cut(s)	686
XspI	CTAG	3 cut(s)	21, 243, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.