Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014638

Physical Location & Seq

Genomic Coordinates Reverse (-)

13195184 .. 13195948

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG154300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCCGTCACCGCTCAAACTAGAAGACCCGCCCATACACCTTATTCCGCTCCCCCCTCTCGCCAAGCCCCAACCGTTAATAAATCGCCTCGTTGGCTCGACTTCCTCATTCTCTCTGCCGTCTTGCTCTTTTTCCTTGAGCTGATCGTCGTTGTTGGGCGCATAGCTATTGACAATAGGGTCGAGAAGGCGATTCAGAAGCACGCGGCGGACGGGCTCGCAAGGGCGGACTACGCCGCGGCTAGCTGGGGCGCTACCGTTGTGGACCATTCTGAGCCTCGTTATGAGAGGGACTGGCCATGGCTTGGCTGGTGGAGTACGTGGTGGAATGGGGTTCACCATAAAGCCATTCATATGTTGAGCCCTAGTTTCGGAGAGCCAGGCCGGTGTTTTCCCTTAAAAGGGCGGAGTGGCTTTGTTGTGGTCAAGCTAAGGGAGCCTATTGTGCCGGAGGCTATTACTATTGAACATGTTTTGGATAGTGTTGTTGATGACCGGTCCGATGCTCCCAAGGATTGCCGTGTCACTGCTTGGTTGCAGCATGATCGGTATGATGGCAAGAAGAATGAGTTTGTTTTGGCCGAGTTCAGTTACGACGTTCGGAAGAGCAATGTTCAGACATTTGGTGTGTCGGGATCGGTGGCGAAGGCCCGCGATGAGGCCATTGTTAACATGGTGGAGTTGCAATTTGGATCCAACAATGGAAGCCCCGTGTCTACTTGCATATATCGGCTCAGAGTTCATGGCCATAAACCTCGATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0005819 GO:0005856 GO:0006996 GO:0006997 GO:0007049 GO:0007059 GO:0007127 GO:0008104 GO:0008150 GO:0008360 GO:0009524 GO:0009987 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031967 GO:0031975 GO:0031984 GO:0032878 GO:0033036 GO:0033365 GO:0034397 GO:0034398 GO:0034504 GO:0034613 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043495 GO:0043621 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044821 GO:0045132 GO:0045141 GO:0045143 GO:0048285 GO:0050000 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051276 GO:0051291 GO:0051303 GO:0051321 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065007 GO:0065008 GO:0070192 GO:0070197 GO:0070727 GO:0071840 GO:0090220 GO:0090435 GO:0097240 GO:0098813 GO:0098827 GO:0140013 GO:1903046 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

254

Amino Acids

28.55

Weight (kDa)

9.15

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sad1_UNC	PF07738	113 - 250	6.9e-31	Sad1 / UNC-like C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13360
rosa_chinensis	RchiOBHm_Chr2g0101131 RchiOBHm_Chr2g0101681
rosa_laevigata	RLG00000017096
rosa_multiflora	Rmu_sc0011183.1_g000009
rosa_roxburghii	Rroxscaffold_2G00141100
rosa_rugosa	Rorug02G0100700 Rorug02G0101400 Rorug02G0101400
rosa_samantha	Rh2AG143900 Rh2BG148900 Rh2BG154300 Rh2CG150000 Rh2CG150100 Rh2CG154600 Rh2DG149400
rosa_wichuraiana	Rw2G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccBSI	CCGCTC	2 cut(s)	14, 50
AccI	GTMKAC	1 cut(s)	716
AccII	CGCG	3 cut(s)	206, 239, 654
AclWI	GGATC	3 cut(s)	643, 687, 700
AcoI	YGGCCR	4 cut(s)	3, 296, 579, 745
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	5 cut(s)	305, 371, 401, 402, 658
AflIII	ACRYGT	1 cut(s)	469
AgeI	ACCGGT	1 cut(s)	495
AgsI	TTSAA	1 cut(s)	467
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	4 cut(s)	142, 167, 246, 430
AluI	AGCT	4 cut(s)	142, 167, 246, 430
AlwI	GGATC	3 cut(s)	643, 687, 700
AoxI	GGCC	7 cut(s)	3, 296, 382, 579, 648, 660, 745
ApeKI	GCWGC	1 cut(s)	538
AsiGI	ACCGGT	1 cut(s)	495
AspLEI	GCGC	2 cut(s)	162, 254
AspS9I	GGNCC	3 cut(s)	265, 498, 649
AsuHPI	GGTGA	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	242
AvaII	GGWCC	2 cut(s)	265, 498
BalI	TGGCCA	2 cut(s)	298, 747
BamHI	GGATCC	1 cut(s)	692
BanII	GRGCYC	2 cut(s)	219, 365
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	2 cut(s)	104, 504
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BciT130I	CCWGG	1 cut(s)	381
BfaI	CTAG	3 cut(s)	21, 243, 366
BfoI	RGCGCY	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	94
BisI	GCNGC	4 cut(s)	207, 237, 240, 539
BlsI	GCNGC	4 cut(s)	208, 238, 241, 540
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	2 cut(s)	265, 498
BmgT120I	GGNCC	3 cut(s)	265, 498, 649
BmiI	GGNNCC	2 cut(s)	438, 694
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	493
BmtI	GCTAGC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	237, 299, 510
BsaWI	WCCGGW	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	5 cut(s)	305, 371, 401, 402, 658
Bse118I	RCCGGY	2 cut(s)	384, 495
Bse1I	ACTGG	1 cut(s)	299
Bse3DI	GCAATG	1 cut(s)	616
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	237, 299, 510
BseLI	CCNNNNNNNGG	5 cut(s)	305, 371, 401, 402, 658
BseMI	GCAATG	1 cut(s)	616
BseMII	CTCAG	2 cut(s)	264, 748
BseNI	ACTGG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	550
BseYI	CCCAGC	1 cut(s)	246
Bsh1236I	CGCG	3 cut(s)	206, 239, 654
Bsh1285I	CGRYCG	1 cut(s)	761
BshFI	GGCC	7 cut(s)	5, 298, 384, 581, 650, 662, 747
BshTI	ACCGGT	1 cut(s)	495
BsiEI	CGRYCG	1 cut(s)	761
BsiSI	CCGG	3 cut(s)	385, 449, 496
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	5 cut(s)	305, 371, 401, 402, 658
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	7 cut(s)	5, 298, 384, 581, 650, 662, 747
Bsp1286I	GDGCHC	2 cut(s)	219, 365
Bsp143I	GATC	5 cut(s)	144, 544, 635, 692, 758
Bsp19I	CCATGG	1 cut(s)	299
BspANI	GGCC	7 cut(s)	5, 298, 384, 581, 650, 662, 747
BspCNI	CTCAG	2 cut(s)	265, 747
BspFNI	CGCG	3 cut(s)	206, 239, 654
BspLI	GGNNCC	2 cut(s)	438, 694
BspOI	GCTAGC	1 cut(s)	246
BspPI	GGATC	3 cut(s)	643, 687, 700
BspQI	GCTCTTC	1 cut(s)	599
BsrBI	CCGCTC	2 cut(s)	14, 50
BsrDI	GCAATG	1 cut(s)	616
BsrFI	RCCGGY	2 cut(s)	384, 495
BsrI	ACTGG	1 cut(s)	299
BssAI	RCCGGY	2 cut(s)	384, 495
BssECI	CCNNGG	3 cut(s)	237, 299, 510
BssMI	GATC	5 cut(s)	144, 544, 635, 692, 758
BssT1I	CCWWGG	2 cut(s)	299, 510
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	76, 259
Bst6I	CTCTTC	1 cut(s)	599
BstBAI	YACGTR	1 cut(s)	321
BstC8I	GCNNGC	4 cut(s)	204, 219, 244, 652
BstDEI	CTNAG	3 cut(s)	273, 431, 734
BstDSI	CCRYGG	2 cut(s)	237, 299
BstFNI	CGCG	3 cut(s)	206, 239, 654
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	2 cut(s)	162, 254
BstKTI	GATC	5 cut(s)	147, 547, 638, 695, 761
BstMBI	GATC	5 cut(s)	144, 544, 635, 692, 758
BstMCI	CGRYCG	1 cut(s)	761
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 94, 233, 436, 445
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	379
BstUI	CGCG	3 cut(s)	206, 239, 654
BstV1I	GCAGC	1 cut(s)	550
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	692
BsuRI	GGCC	7 cut(s)	5, 298, 384, 581, 650, 662, 747
BtgI	CCRYGG	2 cut(s)	237, 299
BtgZI	GCGATG	1 cut(s)	669
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	4 cut(s)	204, 219, 244, 652
CfoI	GCGC	2 cut(s)	162, 254
Cfr10I	RCCGGY	2 cut(s)	384, 495
Cfr13I	GGNCC	3 cut(s)	265, 498, 649
Cfr42I	CCGCGG	1 cut(s)	240
CpoI	CGGWCCG	1 cut(s)	498
Csp6I	GTAC	1 cut(s)	318
CspAI	ACCGGT	1 cut(s)	495
CspI	CGGWCCG	1 cut(s)	498
CviAII	CATG	5 cut(s)	300, 470, 542, 673, 743
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	3 cut(s)	273, 431, 734
DpnI	GATC	5 cut(s)	146, 546, 637, 694, 760
DpnII	GATC	5 cut(s)	144, 544, 635, 692, 758
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	4 cut(s)	3, 296, 579, 745
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
EciI	GGCGGA	3 cut(s)	224, 242, 421
Eco130I	CCWWGG	2 cut(s)	299, 510
Eco24I	GRGCYC	2 cut(s)	219, 365
Eco47I	GGWCC	2 cut(s)	265, 498
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	299, 510
EcoT38I	GRGCYC	2 cut(s)	219, 365
ErhI	CCWWGG	2 cut(s)	299, 510
FaeI	CATG	5 cut(s)	303, 473, 545, 676, 746
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	5 cut(s)	299, 469, 541, 672, 742
FauI	CCCGC	2 cut(s)	37, 659
FauNDI	CATATG	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	716
Fnu4HI	GCNGC	4 cut(s)	207, 237, 240, 539
FriOI	GRGCYC	2 cut(s)	219, 365
Fsp4HI	GCNGC	4 cut(s)	207, 237, 240, 539
FspBI	CTAG	3 cut(s)	21, 243, 366
GlaI	GCGC	2 cut(s)	161, 253
GluI	GCNGC	4 cut(s)	207, 237, 240, 539
GsaI	CCCAGC	1 cut(s)	250
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	7 cut(s)	5, 298, 384, 581, 650, 662, 747
HapII	CCGG	3 cut(s)	385, 449, 496
HhaI	GCGC	2 cut(s)	162, 254
Hin1II	CATG	5 cut(s)	303, 473, 545, 676, 746
Hin6I	GCGC	2 cut(s)	160, 252
HinP1I	GCGC	2 cut(s)	160, 252
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	1 cut(s)	193
HpaI	GTTAAC	1 cut(s)	670
HpaII	CCGG	3 cut(s)	385, 449, 496
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	4 cut(s)	265, 337, 670, 717
Hpy188I	TCNGA	7 cut(s)	198, 274, 374, 502, 603, 618, 737
Hpy188III	TCNNGA	2 cut(s)	184, 633
Hpy8I	GTNNAC	4 cut(s)	265, 337, 670, 717
Hpy99I	CGWCG	2 cut(s)	152, 599
HpyAV	CCTTC	2 cut(s)	181, 640
HpyCH4III	ACNGT	2 cut(s)	76, 259
HpyCH4IV	ACGT	2 cut(s)	320, 597
HpyCH4V	TGCA	3 cut(s)	538, 685, 723
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 94, 233, 436, 445
HpyF3I	CTNAG	3 cut(s)	273, 431, 734
HpySE526I	ACGT	2 cut(s)	320, 597
Hsp92II	CATG	5 cut(s)	303, 473, 545, 676, 746
HspAI	GCGC	2 cut(s)	160, 252
KspAI	GTTAAC	1 cut(s)	670
KspI	CCGCGG	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	144, 544, 635, 692, 758
LguI	GCTCTTC	1 cut(s)	599
LmnI	GCTCC	3 cut(s)	55, 436, 511
LpnPI	CCDG	8 cut(s)	232, 280, 295, 366, 393, 398, 462, 509
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	3 cut(s)	21, 243, 366
MaeII	ACGT	2 cut(s)	320, 597
MaeIII	GTNAC	3 cut(s)	7, 523, 590
MalI	GATC	5 cut(s)	146, 546, 637, 694, 760
MbiI	CCGCTC	2 cut(s)	14, 50
MboI	GATC	5 cut(s)	144, 544, 635, 692, 758
MboII	GAAGA	3 cut(s)	36, 574, 616
MflI	RGATCY	1 cut(s)	692
MhlI	GDGCHC	2 cut(s)	219, 365
MlsI	TGGCCA	2 cut(s)	298, 747
MluCI	AATT	1 cut(s)	686
MluNI	TGGCCA	2 cut(s)	298, 747
MmeI	TCCRAC	1 cut(s)	720
MnlI	CCTC	8 cut(s)	67, 99, 116, 282, 288, 445, 652, 765
Mox20I	TGGCCA	2 cut(s)	298, 747
MscI	TGGCCA	2 cut(s)	298, 747
MseI	TTAA	3 cut(s)	78, 398, 669
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	2 cut(s)	298, 747
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	3 cut(s)	385, 449, 496
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	3 cut(s)	206, 239, 654
MwoI	GCNNNNNNNGC	5 cut(s)	11, 94, 233, 436, 445
NcoI	CCATGG	1 cut(s)	299
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	5 cut(s)	144, 544, 635, 692, 758
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	5 cut(s)	303, 473, 545, 676, 746
NlaIV	GGNNCC	2 cut(s)	438, 694
NmeAIII	GCCGAG	1 cut(s)	607
NmuCI	GTSAC	2 cut(s)	7, 523
NspI	RCATGY	1 cut(s)	473
PciI	ACATGT	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	193
PflMI	CCANNNNNTGG	1 cut(s)	305
PinAI	ACCGGT	1 cut(s)	495
PkrI	GCNGC	4 cut(s)	208, 238, 241, 540
Ple19I	CGATCG	1 cut(s)	761
Ppu21I	YACGTR	1 cut(s)	321
PscI	ACATGT	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	438, 694
PspPI	GGNCC	3 cut(s)	265, 498, 649
PsuI	RGATCY	1 cut(s)	692
PvuI	CGATCG	1 cut(s)	761
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	353
Rsr2I	CGGWCCG	1 cut(s)	498
RsrII	CGGWCCG	1 cut(s)	498
SacII	CCGCGG	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	599
SaqAI	TTAA	3 cut(s)	78, 398, 669
SatI	GCNGC	4 cut(s)	207, 237, 240, 539
Sau3AI	GATC	5 cut(s)	144, 544, 635, 692, 758
Sau96I	GGNCC	3 cut(s)	265, 498, 649
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	2 cut(s)	219, 365
SetI	ASST	8 cut(s)	43, 144, 169, 248, 323, 432, 600, 757
SfaNI	GCATC	1 cut(s)	493
Sfr303I	CCGCGG	1 cut(s)	240
SgrBI	CCGCGG	1 cut(s)	240
SinI	GGWCC	2 cut(s)	265, 498
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	686
SspMI	CTAG	3 cut(s)	21, 243, 366
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	2 cut(s)	299, 510
TaaI	ACNGT	2 cut(s)	76, 259
TaiI	ACGT	2 cut(s)	323, 600
TaqI	TCGA	3 cut(s)	99, 183, 757
TasI	AATT	1 cut(s)	686
TauI	GCSGC	3 cut(s)	209, 239, 242
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	3 cut(s)	78, 398, 669
Tru9I	TTAA	3 cut(s)	78, 398, 669
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	2 cut(s)	7, 523
TseI	GCWGC	1 cut(s)	538
Tsp45I	GTSAC	2 cut(s)	7, 523
TspDTI	ATGAA	2 cut(s)	341, 731
TspRI	CASTG	1 cut(s)	532
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	2 cut(s)	265, 498
XceI	RCATGY	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	2 cut(s)	306, 670
XmiI	GTMKAC	1 cut(s)	716
XspI	CTAG	3 cut(s)	21, 243, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.