Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014638

Physical Location & Seq

Genomic Coordinates Forward (+)

79437267 .. 79438030

Gene Structure 764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCCGTCACCGCTCAAACTAGAAGACCCGCCTATACACCTTATTCCGCTCCCCCTCTCGCCAAGCCCCAACCGGTCGAGAAGGCGATTCAGAAGCACGCGGCGGACGGGCTCGCAAGGGCGGACTACGCCGCGGCTAGCTGGGGCGCCACCGTTGTGGACCATTCTGAGCCTCGTTATGAGAGGGACTGGCCATGGCTTGGCTGGTGGAGTACGTGGTGGAATGGGGTTCACCATAAAGCCATTCATATGCTGAGCCCTAGTTTCGGAGAGCCAGGCCGGTGTTTTCCCTTGAAAGGGAGGAGTGGCTTTGTTGTGGTCAAGCTAAGGGAGCCTATTGTGCCGGATGCTATTACTATTGAACATGTTTTGGATAGCGTTGTTGATGACCGGTCCGATGCTCCCAAGGATTGCCGTGTTACTGCTTGGTTGCAGCATGATCGGTATGATAGCAAGAACAATGAGTTTGTTTTGGCCGAGTTCAGTTACGACGTTGGGAAGAGCAATGTTCAGACATTTGGTGTGTCGGGACAGGTGGCGAAGGCCGGCGATGAGGCCGTTGTTAACATGGTGGAGTTGCAGTTTGGATCCAACCATGGAAGCCCCGTGTCTACTTGCATATATCGGCTCAGAGTTCATGGCCATAAACCTCCATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0005819 GO:0005856 GO:0006996 GO:0006997 GO:0007049 GO:0007059 GO:0007127 GO:0008104 GO:0008150 GO:0008360 GO:0009524 GO:0009987 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031967 GO:0031975 GO:0031984 GO:0032878 GO:0033036 GO:0033365 GO:0034397 GO:0034398 GO:0034504 GO:0034613 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043495 GO:0043621 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044821 GO:0045132 GO:0045141 GO:0045143 GO:0048285 GO:0050000 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051276 GO:0051291 GO:0051303 GO:0051321 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065007 GO:0065008 GO:0070192 GO:0070197 GO:0070727 GO:0071840 GO:0090220 GO:0090435 GO:0097240 GO:0098813 GO:0098827 GO:0140013 GO:1903046 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

219

Amino Acids

24.34

Weight (kDa)

7.16

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sad1_UNC	PF07738	78 - 215	3.4e-32	Sad1 / UNC-like C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13360
rosa_chinensis	RchiOBHm_Chr2g0101131 RchiOBHm_Chr2g0101681
rosa_laevigata	RLG00000017096
rosa_multiflora	Rmu_sc0011183.1_g000009
rosa_roxburghii	Rroxscaffold_2G00141100
rosa_rugosa	Rorug02G0100700 Rorug02G0101400 Rorug02G0101400
rosa_samantha	Rh2AG143900 Rh2BG148900 Rh2BG154300 Rh2CG150000 Rh2CG150100 Rh2CG154600 Rh2DG149400
rosa_wichuraiana	Rw2G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccBSI	CCGCTC	2 cut(s)	14, 50
AccI	GTMKAC	1 cut(s)	611
AccII	CGCG	2 cut(s)	101, 134
AciI	CCGC	8 cut(s)	12, 30, 48, 101, 104, 122, 132, 134
AclWI	GGATC	2 cut(s)	582, 595
AcoI	YGGCCR	4 cut(s)	3, 191, 474, 640
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	4 cut(s)	200, 266, 296, 297
AflIII	ACRYGT	1 cut(s)	364
AgeI	ACCGGT	2 cut(s)	73, 390
AgsI	TTSAA	2 cut(s)	295, 362
AjnI	CCWGG	1 cut(s)	274
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	2 cut(s)	141, 325
AluI	AGCT	2 cut(s)	141, 325
AlwI	GGATC	2 cut(s)	582, 595
AoxI	GGCC	7 cut(s)	3, 191, 277, 474, 543, 555, 640
ApeKI	GCWGC	1 cut(s)	433
AsiGI	ACCGGT	2 cut(s)	73, 390
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	160, 393
AsuHPI	GGTGA	1 cut(s)	224
AsuNHI	GCTAGC	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	160, 393
BalI	TGGCCA	2 cut(s)	193, 642
BamHI	GGATCC	1 cut(s)	587
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	2 cut(s)	114, 260
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	445
BceAI	ACGGC	2 cut(s)	399, 542
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	1 cut(s)	276
BfaI	CTAG	3 cut(s)	21, 138, 261
BfoI	RGCGCY	1 cut(s)	150
BisI	GCNGC	4 cut(s)	102, 132, 135, 434
BlpI	GCTNAGC	1 cut(s)	254
BlsI	GCNGC	4 cut(s)	103, 133, 136, 435
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	2 cut(s)	160, 393
BmgT120I	GGNCC	2 cut(s)	160, 393
BmiI	GGNNCC	3 cut(s)	148, 333, 589
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	337, 388
BmtI	GCTAGC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	326
Bpu1102I	GCTNAGC	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	4 cut(s)	132, 194, 405, 595
BsaWI	WCCGGW	2 cut(s)	73, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 266, 296, 297
Bse118I	RCCGGY	4 cut(s)	73, 279, 390, 545
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	4 cut(s)	132, 194, 405, 595
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	4 cut(s)	200, 266, 296, 297
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	3 cut(s)	159, 245, 643
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	445
BseYI	CCCAGC	1 cut(s)	141
Bsh1236I	CGCG	2 cut(s)	101, 134
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	7 cut(s)	5, 193, 279, 476, 545, 557, 642
BshNI	GGYRCC	1 cut(s)	146
BshTI	ACCGGT	2 cut(s)	73, 390
BsiEI	CGRYCG	1 cut(s)	78
BsiSI	CCGG	5 cut(s)	74, 280, 344, 391, 546
BslFI	GGGAC	2 cut(s)	200, 543
BslI	CCNNNNNNNGG	4 cut(s)	200, 266, 296, 297
BsmFI	GGGAC	2 cut(s)	200, 543
BsnI	GGCC	7 cut(s)	5, 193, 279, 476, 545, 557, 642
Bsp1286I	GDGCHC	2 cut(s)	114, 260
Bsp143I	GATC	2 cut(s)	439, 587
Bsp1720I	GCTNAGC	1 cut(s)	254
Bsp19I	CCATGG	2 cut(s)	194, 595
BspACI	CCGC	8 cut(s)	12, 30, 48, 101, 104, 122, 132, 134
BspANI	GGCC	7 cut(s)	5, 193, 279, 476, 545, 557, 642
BspCNI	CTCAG	3 cut(s)	160, 246, 642
BspFNI	CGCG	2 cut(s)	101, 134
BspLI	GGNNCC	3 cut(s)	148, 333, 589
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	2 cut(s)	582, 595
BspQI	GCTCTTC	1 cut(s)	494
BspT107I	GGYRCC	1 cut(s)	146
BsrBI	CCGCTC	2 cut(s)	14, 50
BsrDI	GCAATG	1 cut(s)	511
BsrFI	RCCGGY	4 cut(s)	73, 279, 390, 545
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	4 cut(s)	73, 279, 390, 545
BssECI	CCNNGG	4 cut(s)	132, 194, 405, 595
BssMI	GATC	2 cut(s)	439, 587
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	3 cut(s)	194, 405, 595
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	494
BstACI	GRCGYC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	216
BstC8I	GCNNGC	4 cut(s)	99, 114, 139, 547
BstDEI	CTNAG	4 cut(s)	168, 254, 326, 629
BstDSI	CCRYGG	3 cut(s)	132, 194, 595
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	2 cut(s)	101, 134
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	442, 590
BstMBI	GATC	2 cut(s)	439, 587
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 128, 331, 340
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	274
BstUI	CGCG	2 cut(s)	101, 134
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	587
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	587
BsuRI	GGCC	7 cut(s)	5, 193, 279, 476, 545, 557, 642
BtgI	CCRYGG	3 cut(s)	132, 194, 595
BtgZI	GCGATG	1 cut(s)	564
BtsCI	GGATG	1 cut(s)	352
Cac8I	GCNNGC	4 cut(s)	99, 114, 139, 547
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	4 cut(s)	73, 279, 390, 545
Cfr13I	GGNCC	2 cut(s)	160, 393
Cfr42I	CCGCGG	1 cut(s)	135
CpoI	CGGWCCG	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	213
CspAI	ACCGGT	2 cut(s)	73, 390
CspI	CGGWCCG	1 cut(s)	393
CviAII	CATG	6 cut(s)	195, 365, 437, 568, 596, 638
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	4 cut(s)	168, 254, 326, 629
DinI	GGCGCC	1 cut(s)	148
DpnI	GATC	2 cut(s)	441, 589
DpnII	GATC	2 cut(s)	439, 587
EaeI	YGGCCR	4 cut(s)	3, 191, 474, 640
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
EciI	GGCGGA	2 cut(s)	119, 137
Eco130I	CCWWGG	3 cut(s)	194, 405, 595
Eco24I	GRGCYC	2 cut(s)	114, 260
Eco47I	GGWCC	2 cut(s)	160, 393
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	3 cut(s)	194, 405, 595
EcoT38I	GRGCYC	2 cut(s)	114, 260
EgeI	GGCGCC	1 cut(s)	148
EheI	GGCGCC	1 cut(s)	148
ErhI	CCWWGG	3 cut(s)	194, 405, 595
FaeI	CATG	6 cut(s)	198, 368, 440, 571, 599, 641
FaqI	GGGAC	2 cut(s)	200, 543
FatI	CATG	6 cut(s)	194, 364, 436, 567, 595, 637
FauI	CCCGC	1 cut(s)	37
FauNDI	CATATG	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	611
Fnu4HI	GCNGC	4 cut(s)	102, 132, 135, 434
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	2 cut(s)	114, 260
Fsp4HI	GCNGC	4 cut(s)	102, 132, 135, 434
FspBI	CTAG	3 cut(s)	21, 138, 261
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	4 cut(s)	102, 132, 135, 434
GsaI	CCCAGC	1 cut(s)	145
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	7 cut(s)	5, 193, 279, 476, 545, 557, 642
HapII	CCGG	5 cut(s)	74, 280, 344, 391, 546
HhaI	GCGC	1 cut(s)	149
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	6 cut(s)	198, 368, 440, 571, 599, 641
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	1 cut(s)	88
HpaI	GTTAAC	1 cut(s)	565
HpaII	CCGG	5 cut(s)	74, 280, 344, 391, 546
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	4 cut(s)	160, 232, 565, 612
Hpy188I	TCNGA	6 cut(s)	93, 169, 269, 397, 513, 632
Hpy188III	TCNNGA	2 cut(s)	79, 528
Hpy8I	GTNNAC	4 cut(s)	160, 232, 565, 612
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	2 cut(s)	76, 535
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	2 cut(s)	215, 492
HpyCH4V	TGCA	3 cut(s)	433, 580, 618
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 128, 331, 340
HpyF3I	CTNAG	4 cut(s)	168, 254, 326, 629
HpySE526I	ACGT	2 cut(s)	215, 492
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	6 cut(s)	198, 368, 440, 571, 599, 641
HspAI	GCGC	1 cut(s)	147
KasI	GGCGCC	1 cut(s)	146
KroI	GCCGGC	1 cut(s)	545
KroNI	GCCGGC	1 cut(s)	547
KspAI	GTTAAC	1 cut(s)	565
KspI	CCGCGG	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	439, 587
LguI	GCTCTTC	1 cut(s)	494
LmnI	GCTCC	3 cut(s)	55, 331, 406
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	2 cut(s)	337, 388
MaeI	CTAG	3 cut(s)	21, 138, 261
MaeII	ACGT	2 cut(s)	215, 492
MaeIII	GTNAC	3 cut(s)	7, 418, 485
MalI	GATC	2 cut(s)	441, 589
MbiI	CCGCTC	2 cut(s)	14, 50
MboI	GATC	2 cut(s)	439, 587
MboII	GAAGA	2 cut(s)	36, 511
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	2 cut(s)	114, 260
MlsI	TGGCCA	2 cut(s)	193, 642
MluNI	TGGCCA	2 cut(s)	193, 642
Mly113I	GGCGCC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	615
MnlI	CCTC	6 cut(s)	66, 177, 183, 294, 547, 660
Mox20I	TGGCCA	2 cut(s)	193, 642
MroNI	GCCGGC	1 cut(s)	545
MscI	TGGCCA	2 cut(s)	193, 642
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	2 cut(s)	155, 248
Msp20I	TGGCCA	2 cut(s)	193, 642
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	5 cut(s)	74, 280, 344, 391, 546
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	2 cut(s)	101, 134
MwoI	GCNNNNNNNGC	4 cut(s)	11, 128, 331, 340
NaeI	GCCGGC	1 cut(s)	547
NarI	GGCGCC	1 cut(s)	147
NcoI	CCATGG	2 cut(s)	194, 595
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	2 cut(s)	439, 587
NgoMIV	GCCGGC	1 cut(s)	545
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	6 cut(s)	198, 368, 440, 571, 599, 641
NlaIV	GGNNCC	3 cut(s)	148, 333, 589
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	1 cut(s)	7
NspI	RCATGY	1 cut(s)	368
OliI	CACNNNNGTG	1 cut(s)	155
PciI	ACATGT	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	494
PdiI	GCCGGC	1 cut(s)	547
PfeI	GAWTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	200
PinAI	ACCGGT	2 cut(s)	73, 390
PkrI	GCNGC	4 cut(s)	103, 133, 136, 435
PluTI	GGCGCC	1 cut(s)	150
Ppu21I	YACGTR	1 cut(s)	216
PscI	ACATGT	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	148, 333, 589
PspPI	GGNCC	2 cut(s)	160, 393
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
RseI	CAYNNNNRTG	2 cut(s)	155, 248
Rsr2I	CGGWCCG	1 cut(s)	393
RsrII	CGGWCCG	1 cut(s)	393
SacII	CCGCGG	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	4 cut(s)	102, 132, 135, 434
Sau3AI	GATC	2 cut(s)	439, 587
Sau96I	GGNCC	2 cut(s)	160, 393
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	2 cut(s)	114, 260
SetI	ASST	7 cut(s)	43, 143, 218, 327, 495, 537, 652
SfaNI	GCATC	2 cut(s)	337, 388
SfoI	GGCGCC	1 cut(s)	148
Sfr303I	CCGCGG	1 cut(s)	135
SgrBI	CCGCGG	1 cut(s)	135
SinI	GGWCC	2 cut(s)	160, 393
SmiMI	CAYNNNNRTG	2 cut(s)	155, 248
SsiI	CCGC	8 cut(s)	12, 30, 48, 101, 104, 122, 132, 134
SspDI	GGCGCC	1 cut(s)	146
SspMI	CTAG	3 cut(s)	21, 138, 261
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	3 cut(s)	194, 405, 595
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	2 cut(s)	218, 495
TaqI	TCGA	1 cut(s)	78
TauI	GCSGC	3 cut(s)	104, 134, 137
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	236, 626
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	160, 393
XceI	RCATGY	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	611
XspI	CTAG	3 cut(s)	21, 138, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.