Rorug02G0100700

SUN domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
8563216 .. 8565450
2235 bp
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UTR
Exon/CDS
Intron
Rorug02G0100700.1

Sequence Viewer

Length: 1497 bp
ATGGAAGGTGAAGCTTCCAATTCGAAGAAGGATCCAGTTTGTGAGATTTGTGTAGAGGACAAGTCTGCAAACGAGTTGTTTGGGATTCAAAATTGCAGCCATTCTTATTGCACGGTCTGTGTGGTCAATTACGTGGTTTCCAAGCTTCAAGAGAACATTACAGGCATTAGCTGTCCTGTTCCTGATTGCAGAGGATCGCTAGAGCCAGAGCACTGTCAATCAATTCTCCCCTCAGAAGTGTTCGATAGGTGGTTATGTGCATTGTGTGAAGCTTTGGTTCTTGAGTCTGAAAAGTTTTACTGTCCTTTTAAGGATTGCTCAGCGATGTTAATTGATGATGGGAAAGAGGTTGTGAGAGAATCGGAGTGCCCGAATTGTAGGAGATTGTTCTGTGCGCAGTGTAAGGTTTCTTGGCATGCCGGGATTGACTGCACAGAGTTTCAGAACTTGAATAAAGATGAGAGGGAAAATGAAGATATTTTGTTGAGGAACCTCGCTGACAAGAAAAAATGGAGGAGGTGTACAAATTGCCAGTACTATGTTGAAAGATCTGATGGTTGCTCTTACATGAAATGCAGATGTGGATATGCCTTCTGTTACAACTGTGGCGTAACAGCTCCCTTAGATTCCCATACCGCTCGATGTCGAAGCTGGCTTTGGAGTGGAGTGACGAATGACAAGCAAGAAAGCCAAAGTGCTCACAAAGCTTCTGAGACTCATATTGAGATTGTGAACTATGAAGAGGATGCCCTTTTCTCCACAACAATTTATCGTAAGGGCTCAGATGACGGCATATCAACTCCTCGAACCACTCCTGTTAACTTCATTTATGACAATGAAGAATTTGATGAGTCTAGGAAAAAGCGAAGAAAAACTCAAGATAAAAAATCTTCAAATTTCGATACTTCCAATTCTAAGGAACCGGAAACTTTTGTTTGTGAAATTTGTGTTGATGACAAGTCTGCCAGCGAGTCGTTTGGCGTCCAAAATTGCAGCCATTCTTACTGTAGAGACTGCATAAAGAATTACGTGGCATCCAAGCTTCAAGAGAACATTACAAGCATTAATTGCCCTGTCCCTGATTGCAAAGGGTCACTAGACCCCGAGTATTGTCGTCCAATGCTGCCCTCTGAAGTGGTTGAGAGGTGGGAAAGCGCTCTACGTGAGACTATGATTGTTGGGTCTCAGAGATTTTACTGTCCCTTCAAGGACTGCTCGATAATGTTGATTGAGGATGGGACACAGGTTGTAGCAGAGTCGGAGTGCCCTAATTGTAAGAGAATGTTCTGTGCGCAGTGTAAGGTTCCTTGGCACACCGAGATTGAATGCGAAGAGTTTCAGAAGCTGAATGAGAATGAGCGGGAGAAGGAGGATATCATGCTGAGGAACCTTGCTCGGAAGCGGCATTGGAGTAGGTGTCCAAAGTGTAGGTTCTATGTGGAAAGAACGCATGGTTGCGATTCCATACGGTGCTGGTCAGTTTCTCATTTGATTTGA

Protein Analysis

498

Amino Acids

57.36

Weight (kDa)

5.4

Isoelectric Point (pI)

59.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 88 - 144 5.1e-09 IBR domain, a half RING-finger domain
IBR PF01485 159 - 206 1.6e-08 IBR domain, a half RING-finger domain
IBR PF01485 384 - 443 6.6e-10 IBR domain, a half RING-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 396, 1293
AccBSI CCGCTC 2 cut(s) 638, 1360
AciI CCGC 3 cut(s) 636, 1360, 1402
AclWI GGATC 3 cut(s) 26, 39, 202
AcsI RAATTY 3 cut(s) 842, 895, 942
AcuI CTGAAG 1 cut(s) 1152
AcyI GRCGYC 1 cut(s) 981
AfaI GTAC 2 cut(s) 523, 536
AfeI AGCGCT 1 cut(s) 1156
AgsI TTSAA 8 cut(s) 89, 149, 451, 545, 894, 1046, 1207, 1325
AjuI GAANNNNNNNTTGG 2 cut(s) 640, 672
AluBI AGCT 9 cut(s) 14, 145, 171, 272, 617, 651, 707, 1042, 1345
AluI AGCT 9 cut(s) 14, 145, 171, 272, 617, 651, 707, 1042, 1345
Alw21I GWGCWC 2 cut(s) 213, 700
Alw26I GTCTC 4 cut(s) 707, 1005, 1160, 1188
AlwI GGATC 3 cut(s) 26, 39, 202
AlwNI CAGNNNCTG 1 cut(s) 1345
Ama87I CYCGRG 1 cut(s) 1103
Aor51HI AGCGCT 1 cut(s) 1156
ApeKI GCWGC 3 cut(s) 96, 993, 1123
ApoI RAATTY 3 cut(s) 842, 895, 942
AseI ATTAAT 1 cut(s) 1065
Asp700I GAANNNNTTC 1 cut(s) 1335
AspLEI GCGC 3 cut(s) 397, 1157, 1294
AsuC2I CCSGG 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 20
AsuII TTCGAA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 1103
BaeGI GKGCMC 2 cut(s) 371, 1268
BamHI GGATCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 782
Bbv12I GWGCWC 2 cut(s) 213, 700
BbvCI CCTCAGC 1 cut(s) 1382
BbvI GCAGC 3 cut(s) 108, 1005, 1110
BccI CCATC 3 cut(s) 332, 548, 1229
BceAI ACGGC 1 cut(s) 805
BcnI CCSGG 1 cut(s) 421
BcoDI GTCTC 4 cut(s) 707, 1005, 1160, 1188
BfaI CTAG 3 cut(s) 200, 855, 1097
BfmI CTRYAG 1 cut(s) 1006
BfoI RGCGCY 1 cut(s) 1158
BglII AGATCT 1 cut(s) 548
BisI GCNGC 4 cut(s) 97, 994, 1124, 1403
BlpI GCTNAGC 1 cut(s) 319
BlsI GCNGC 4 cut(s) 98, 995, 1125, 1404
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 1103
BmiI GGNNCC 5 cut(s) 33, 491, 921, 1305, 1388
BmrFI CCNGG 1 cut(s) 421
BmsI GCATC 2 cut(s) 736, 1043
Bpu10I CCTNAGC 1 cut(s) 1382
Bpu1102I GCTNAGC 1 cut(s) 319
Bpu14I TTCGAA 1 cut(s) 23
BpuEI CTTGAG 2 cut(s) 302, 861
BpuMI CCSGG 1 cut(s) 421
BsaAI YACGTR 3 cut(s) 133, 1030, 1163
BsaHI GRCGYC 1 cut(s) 981
BsaI GGTCTC 1 cut(s) 1188
BsaJI CCNNGG 1 cut(s) 1307
BsaWI WCCGGW 1 cut(s) 922
BsaXI ACNNNNNCTCC 4 cut(s) 505, 535, 1402, 1432
Bse1I ACTGG 2 cut(s) 35, 532
BseDI CCNNGG 1 cut(s) 1307
BseGI GGATG 3 cut(s) 751, 1034, 1240
BseMII CTCAG 6 cut(s) 246, 333, 702, 795, 1199, 1373
BseNI ACTGG 2 cut(s) 35, 532
BseRI GAGGAG 2 cut(s) 529, 792
BseSI GKGCMC 2 cut(s) 371, 1268
BseXI GCAGC 3 cut(s) 108, 1005, 1110
BsgI GTGCAG 1 cut(s) 415
BsiHKAI GWGCWC 2 cut(s) 213, 700
BsiHKCI CYCGRG 1 cut(s) 1103
BsiSI CCGG 2 cut(s) 420, 923
BslFI GGGAC 3 cut(s) 1061, 1185, 1252
BsmAI GTCTC 4 cut(s) 707, 1005, 1160, 1188
BsmFI GGGAC 3 cut(s) 1061, 1185, 1252
BsmI GAATGC 1 cut(s) 1331
Bso31I GGTCTC 1 cut(s) 1188
BsoBI CYCGRG 1 cut(s) 1103
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 5 cut(s) 213, 371, 700, 782, 1268
Bsp1407I TGTACA 1 cut(s) 521
Bsp143I GATC 3 cut(s) 31, 194, 548
Bsp1720I GCTNAGC 1 cut(s) 319
BspACI CCGC 3 cut(s) 636, 1360, 1402
BspCNI CTCAG 6 cut(s) 245, 332, 703, 794, 1198, 1374
BspLI GGNNCC 5 cut(s) 33, 491, 921, 1305, 1388
BspPI GGATC 3 cut(s) 26, 39, 202
BspT104I TTCGAA 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 1188
BsrBI CCGCTC 2 cut(s) 638, 1360
BsrGI TGTACA 1 cut(s) 521
BsrI ACTGG 2 cut(s) 35, 532
BssECI CCNNGG 1 cut(s) 1307
BssMI GATC 3 cut(s) 31, 194, 548
BssNI GRCGYC 1 cut(s) 981
BssT1I CCWWGG 1 cut(s) 1307
Bst4CI ACNGT 7 cut(s) 115, 215, 302, 605, 1007, 1199, 1470
Bst6I CTCTTC 2 cut(s) 735, 1326
BstACI GRCGYC 1 cut(s) 981
BstAPI GCANNNNNTGC 1 cut(s) 1068
BstAUI TGTACA 1 cut(s) 521
BstBAI YACGTR 3 cut(s) 133, 1030, 1163
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 3 cut(s) 417, 653, 967
BstDEI CTNAG 8 cut(s) 232, 319, 622, 711, 781, 915, 1185, 1382
BstF5I GGATG 3 cut(s) 751, 1034, 1240
BstH2I RGCGCY 1 cut(s) 1158
BstHHI GCGC 3 cut(s) 397, 1157, 1294
BstKTI GATC 3 cut(s) 34, 197, 551
BstMAI GTCTC 4 cut(s) 707, 1005, 1160, 1188
BstMBI GATC 3 cut(s) 31, 194, 548
BstMWI GCNNNNNNNGC 2 cut(s) 704, 1068
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 1006
BstSLI GKGCMC 2 cut(s) 371, 1268
BstV1I GCAGC 3 cut(s) 108, 1005, 1110
BstX2I RGATCY 2 cut(s) 31, 548
BstYI RGATCY 2 cut(s) 31, 548
BtgZI GCGATG 1 cut(s) 338
BtsCI GGATG 3 cut(s) 751, 1034, 1240
BtsI GCAGTG 2 cut(s) 404, 1301
BtsIMutI CAGTG 3 cut(s) 211, 404, 1301
Cac8I GCNNGC 3 cut(s) 417, 653, 967
CaiI CAGNNNCTG 1 cut(s) 1345
CfoI GCGC 3 cut(s) 397, 1157, 1294
CseI GACGC 1 cut(s) 970
Csp6I GTAC 2 cut(s) 522, 535
CviAII CATG 4 cut(s) 416, 568, 1378, 1451
CviQI GTAC 2 cut(s) 522, 535
DdeI CTNAG 8 cut(s) 232, 319, 622, 711, 781, 915, 1185, 1382
DpnI GATC 3 cut(s) 33, 196, 550
DpnII GATC 3 cut(s) 31, 194, 548
Eam1104I CTCTTC 2 cut(s) 735, 1326
EarI CTCTTC 2 cut(s) 735, 1326
Eco130I CCWWGG 1 cut(s) 1307
Eco24I GRGCYC 1 cut(s) 782
Eco31I GGTCTC 1 cut(s) 1188
Eco32I GATATC 1 cut(s) 1375
Eco47III AGCGCT 1 cut(s) 1156
Eco57I CTGAAG 1 cut(s) 1152
Eco88I CYCGRG 1 cut(s) 1103
EcoRV GATATC 1 cut(s) 1375
EcoT14I CCWWGG 1 cut(s) 1307
EcoT38I GRGCYC 1 cut(s) 782
ErhI CCWWGG 1 cut(s) 1307
FaeI CATG 4 cut(s) 419, 571, 1381, 1454
FaqI GGGAC 3 cut(s) 1061, 1185, 1252
FatI CATG 4 cut(s) 415, 567, 1377, 1450
FauI CCCGC 1 cut(s) 1353
Fnu4HI GCNGC 4 cut(s) 97, 994, 1124, 1403
FokI GGATG 3 cut(s) 758, 1021, 1247
FriOI GRGCYC 1 cut(s) 782
Fsp4HI GCNGC 4 cut(s) 97, 994, 1124, 1403
FspBI CTAG 3 cut(s) 200, 855, 1097
FspI TGCGCA 2 cut(s) 396, 1293
GlaI GCGC 3 cut(s) 396, 1156, 1293
GluI GCNGC 4 cut(s) 97, 994, 1124, 1403
HaeII RGCGCY 1 cut(s) 1158
HapII CCGG 2 cut(s) 420, 923
HgaI GACGC 1 cut(s) 970
HhaI GCGC 3 cut(s) 397, 1157, 1294
Hin1I GRCGYC 1 cut(s) 981
Hin1II CATG 4 cut(s) 419, 571, 1381, 1454
Hin6I GCGC 3 cut(s) 395, 1155, 1292
HinP1I GCGC 3 cut(s) 395, 1155, 1292
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HindIII AAGCTT 5 cut(s) 12, 143, 270, 705, 1040
HinfI GANTC 9 cut(s) 85, 284, 359, 626, 715, 851, 971, 1256, 1460
HpaI GTTAAC 1 cut(s) 820
HpaII CCGG 2 cut(s) 420, 923
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 3 cut(s) 522, 733, 820
Hpy188III TCNNGA 5 cut(s) 149, 182, 281, 878, 1046
Hpy8I GTNNAC 3 cut(s) 522, 733, 820
HpyAV CCTTC 4 cut(s) 22, 601, 1213, 1360
HpyCH4III ACNGT 7 cut(s) 115, 215, 302, 605, 1007, 1199, 1470
HpyCH4IV ACGT 3 cut(s) 132, 1029, 1162
HpyF10VI GCNNNNNNNGC 2 cut(s) 704, 1068
HpyF3I CTNAG 8 cut(s) 232, 319, 622, 711, 781, 915, 1185, 1382
HpySE526I ACGT 3 cut(s) 132, 1029, 1162
Hsp92I GRCGYC 1 cut(s) 981
Hsp92II CATG 4 cut(s) 419, 571, 1381, 1454
HspAI GCGC 3 cut(s) 395, 1155, 1292
KspAI GTTAAC 1 cut(s) 820
Kzo9I GATC 3 cut(s) 31, 194, 548
LmnI GCTCC 1 cut(s) 622
Lsp1109I GCAGC 3 cut(s) 108, 1005, 1110
LweI GCATC 2 cut(s) 736, 1043
MaeI CTAG 3 cut(s) 200, 855, 1097
MaeII ACGT 3 cut(s) 132, 1029, 1162
MaeIII GTNAC 4 cut(s) 596, 610, 667, 1092
MalI GATC 3 cut(s) 33, 196, 550
MbiI CCGCTC 2 cut(s) 638, 1360
MboI GATC 3 cut(s) 31, 194, 548
MboII GAAGA 7 cut(s) 37, 485, 752, 851, 879, 882, 1343
MflI RGATCY 2 cut(s) 31, 548
MhlI GDGCHC 5 cut(s) 213, 371, 700, 782, 1268
MlyI GAGTC 5 cut(s) 293, 709, 860, 980, 1265
MmeI TCCRAC 1 cut(s) 1239
MroXI GAANNNNTTC 1 cut(s) 1335
MseI TTAA 4 cut(s) 309, 329, 819, 1065
MspI CCGG 2 cut(s) 420, 923
MspR9I CCNGG 1 cut(s) 421
Mva1269I GAATGC 1 cut(s) 1331
MwoI GCNNNNNNNGC 2 cut(s) 704, 1068
NciI CCSGG 1 cut(s) 421
NdeII GATC 3 cut(s) 31, 194, 548
NlaIII CATG 4 cut(s) 419, 571, 1381, 1454
NlaIV GGNNCC 5 cut(s) 33, 491, 921, 1305, 1388
NmuCI GTSAC 2 cut(s) 667, 1092
NsbI TGCGCA 2 cut(s) 396, 1293
NspI RCATGY 1 cut(s) 419
NspV TTCGAA 1 cut(s) 23
PaeI GCATGC 1 cut(s) 419
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PctI GAATGC 1 cut(s) 1331
PdmI GAANNNNTTC 1 cut(s) 1335
PfeI GAWTC 4 cut(s) 85, 359, 626, 1460
PkrI GCNGC 4 cut(s) 98, 995, 1125, 1404
PleI GAGTC 5 cut(s) 292, 709, 859, 979, 1264
PpsI GAGTC 5 cut(s) 292, 709, 859, 979, 1264
Ppu21I YACGTR 3 cut(s) 133, 1030, 1163
PshBI ATTAAT 1 cut(s) 1065
PspN4I GGNNCC 5 cut(s) 33, 491, 921, 1305, 1388
PstNI CAGNNNCTG 1 cut(s) 1345
PsuI RGATCY 2 cut(s) 31, 548
RsaI GTAC 2 cut(s) 523, 536
RsaNI GTAC 2 cut(s) 522, 535
SaqAI TTAA 4 cut(s) 309, 329, 819, 1065
SatI GCNGC 4 cut(s) 97, 994, 1124, 1403
Sau3AI GATC 3 cut(s) 31, 194, 548
ScaI AGTACT 1 cut(s) 536
SchI GAGTC 5 cut(s) 293, 709, 860, 980, 1265
ScrFI CCNGG 1 cut(s) 421
SduI GDGCHC 5 cut(s) 213, 371, 700, 782, 1268
SfaNI GCATC 2 cut(s) 736, 1043
SfcI CTRYAG 1 cut(s) 1006
SfuI TTCGAA 1 cut(s) 23
SmlI CTYRAG 2 cut(s) 281, 876
SmoI CTYRAG 2 cut(s) 281, 876
SphI GCATGC 1 cut(s) 419
SsiI CCGC 3 cut(s) 636, 1360, 1402
SspMI CTAG 3 cut(s) 200, 855, 1097
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 1 cut(s) 1307
TaaI ACNGT 7 cut(s) 115, 215, 302, 605, 1007, 1199, 1470
TaiI ACGT 3 cut(s) 135, 1032, 1165
TaqI TCGA 7 cut(s) 23, 243, 640, 646, 805, 900, 1217
TatI WGTACW 2 cut(s) 521, 534
TauI GCSGC 1 cut(s) 1405
TfiI GAWTC 4 cut(s) 85, 359, 626, 1460
Tru1I TTAA 4 cut(s) 309, 329, 819, 1065
Tru9I TTAA 4 cut(s) 309, 329, 819, 1065
TscAI CASTG 3 cut(s) 218, 404, 1301
TseFI GTSAC 2 cut(s) 667, 1092
TseI GCWGC 3 cut(s) 96, 993, 1123
Tsp45I GTSAC 2 cut(s) 667, 1092
TspDTI ATGAA 5 cut(s) 486, 584, 753, 814, 852
TspRI CASTG 3 cut(s) 218, 404, 1301
VspI ATTAAT 1 cut(s) 1065
XapI RAATTY 3 cut(s) 842, 895, 942
XceI RCATGY 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 1335
XspI CTAG 3 cut(s) 200, 855, 1097
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.