Rh2AG143900

SUN domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014638
Physical Location & Seq
Forward (+)
13177430 .. 13181755
4326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG143900.1

Sequence Viewer

Length: 987 bp
ATGCTCTTGGACGGCATTCTGATGACGGGTTTGGAGATTTTGGTTGACGGTCCTGGAGATACATCTTCTCGGGTTATCTTGTACTCATGTTACTATATGGTATTCTATACCTGGACTTTCTTGTTGAGGAAGAATCTGAAGAAACTACCTGCTAGGATGGAGTGGATGGCTGGGCTGTGCAGATTGATCTTGCTAGGAGTGCTTATGGCGCTGAATTCATTGGGAATTTCGATGGCAACTGAGAATGTGCTATATCTATTTGTGTATCTTTTTTTTCGTTTTGCAATGGGCATTGTGATCAAGTTTTACTCGGCACGGATCATTCTTGGATTTGCTGAAGAGCGACTTTGCTTGGGAAAAGATCATTTGGATAGGCTGGAAGAGCTGATGGATCAAACACAAGGGTCGAGAAGGCGATTCAGAAGCACGGCAGACGGGCTCGCAAGGGCGGACTACGCCGCGGCTAGCTGGGGTGCTACCGTTGTGGACCATTCTGAGCCTCGTTATGAGAGGGACTGGCCATGGCTTGGTTGGTGGAGTACGTGGTGGAATGGGGTTCACCATAAAGCCATTCATATGTTGAGCCCTAGTTTCGGAGAGCCAGGCCGGTGTTTTCCCTTGAAAGGGAGGAGTGGCTTTGTTGTGGTCAAGCTAAGGGAGCCTATTGTGCCGGAGGCTATTACTATTGAACATGTTTTGGATAGTGTTGTTGATGACAGGTCCGATGCTCCCAAGGATTGCCGTGTCACTGCTTGGTTGCAACATGATCGGTATGATGGCAAGAAGAATGAGTTTGTTTTGGCCGAGTTCAGTTACGACGTTCGGAAGAGCAATGCTCAGACATTTGGTGTGTCGGGATCGGTGGCGAAGGCCCGCGATGAGGCCGTTGTTAACATGGTGGAGTTGCAGTTTGGATCCAACAATGGAAGCCCCGTGTCTACTTGCATATATCGGCTCAGAGTTCATGGCCATAAACCTCGATCGTAG

Protein Analysis

328

Amino Acids

37.36

Weight (kDa)

8.66

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sad1_UNC PF07738 187 - 324 9.8e-31 Sad1 / UNC-like C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 157
AccB7I CCANNNNNTGG 1 cut(s) 527
AccI GTMKAC 1 cut(s) 938
AccII CGCG 2 cut(s) 461, 876
AciI CCGC 4 cut(s) 449, 459, 461, 874
AclWI GGATC 5 cut(s) 326, 399, 865, 909, 922
AcoI YGGCCR 3 cut(s) 518, 801, 967
AcsI RAATTY 2 cut(s) 214, 225
AcuI CTGAAG 2 cut(s) 158, 357
AfaI GTAC 2 cut(s) 83, 541
AfiI CCNNNNNNNGG 5 cut(s) 527, 593, 623, 624, 880
AflIII ACRYGT 1 cut(s) 691
AgsI TTSAA 2 cut(s) 622, 689
AjnI CCWGG 3 cut(s) 52, 110, 601
AluBI AGCT 3 cut(s) 385, 468, 652
AluI AGCT 3 cut(s) 385, 468, 652
AlwI GGATC 5 cut(s) 326, 399, 865, 909, 922
Ama87I CYCGRG 1 cut(s) 69
AoxI GGCC 6 cut(s) 518, 604, 801, 870, 882, 967
ApoI RAATTY 2 cut(s) 214, 225
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 4 cut(s) 50, 487, 720, 871
AsuHPI GGTGA 1 cut(s) 551
AsuNHI GCTAGC 1 cut(s) 464
AvaI CYCGRG 1 cut(s) 69
AvaII GGWCC 3 cut(s) 50, 487, 720
BalI TGGCCA 2 cut(s) 520, 969
BamHI GGATCC 1 cut(s) 914
BanII GRGCYC 2 cut(s) 441, 587
BccI CCATC 5 cut(s) 151, 160, 226, 382, 770
BceAI ACGGC 4 cut(s) 28, 444, 726, 869
BcgI CGANNNNNNTGC 2 cut(s) 749, 783
BciT130I CCWGG 3 cut(s) 54, 112, 603
BclI TGATCA 1 cut(s) 297
BfaI CTAG 4 cut(s) 153, 194, 465, 588
BfoI RGCGCY 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 157
BisI GCNGC 2 cut(s) 459, 462
BlsI GCNGC 2 cut(s) 460, 463
Bme1390I CCNGG 3 cut(s) 54, 112, 603
Bme18I GGWCC 3 cut(s) 50, 487, 720
BmeT110I CYCGRG 1 cut(s) 69
BmgT120I GGNCC 4 cut(s) 50, 487, 720, 871
BmiI GGNNCC 2 cut(s) 660, 916
BmrFI CCNGG 3 cut(s) 54, 112, 603
BmsI GCATC 1 cut(s) 715
BmtI GCTAGC 1 cut(s) 468
BplI GAGNNNNNCTC 2 cut(s) 820, 852
BpmI CTGGAG 1 cut(s) 75
Bpu10I CCTNAGC 1 cut(s) 653
BsaAI YACGTR 1 cut(s) 543
BsaJI CCNNGG 3 cut(s) 459, 521, 732
BsaXI ACNNNNNCTCC 2 cut(s) 893, 923
Bsc4I CCNNNNNNNGG 5 cut(s) 527, 593, 623, 624, 880
Bse118I RCCGGY 1 cut(s) 606
Bse1I ACTGG 1 cut(s) 521
Bse3DI GCAATG 2 cut(s) 291, 838
BseBI CCWGG 3 cut(s) 54, 112, 603
BseDI CCNNGG 3 cut(s) 459, 521, 732
BseGI GGATG 2 cut(s) 162, 171
BseLI CCNNNNNNNGG 5 cut(s) 527, 593, 623, 624, 880
BseMI GCAATG 2 cut(s) 291, 838
BseMII CTCAG 4 cut(s) 231, 486, 851, 970
BseNI ACTGG 1 cut(s) 521
BseRI GAGGAG 1 cut(s) 643
BseYI CCCAGC 2 cut(s) 170, 468
BsgI GTGCAG 1 cut(s) 199
Bsh1236I CGCG 2 cut(s) 461, 876
Bsh1285I CGRYCG 1 cut(s) 983
BshFI GGCC 6 cut(s) 520, 606, 803, 872, 884, 969
BsiEI CGRYCG 1 cut(s) 983
BsiHKCI CYCGRG 1 cut(s) 69
BsiSI CCGG 2 cut(s) 607, 671
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 5 cut(s) 527, 593, 623, 624, 880
BsmFI GGGAC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 6 cut(s) 520, 606, 803, 872, 884, 969
BsoBI CYCGRG 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 441, 587
Bsp143I GATC 9 cut(s) 186, 297, 318, 361, 391, 766, 857, 914, 980
Bsp19I CCATGG 1 cut(s) 521
BspACI CCGC 4 cut(s) 449, 459, 461, 874
BspANI GGCC 6 cut(s) 520, 606, 803, 872, 884, 969
BspCNI CTCAG 4 cut(s) 232, 487, 850, 969
BspFNI CGCG 2 cut(s) 461, 876
BspLI GGNNCC 2 cut(s) 660, 916
BspMI ACCTGC 1 cut(s) 157
BspOI GCTAGC 1 cut(s) 468
BspPI GGATC 5 cut(s) 326, 399, 865, 909, 922
BspQI GCTCTTC 3 cut(s) 333, 375, 821
BsrDI GCAATG 2 cut(s) 291, 838
BsrFI RCCGGY 1 cut(s) 606
BsrI ACTGG 1 cut(s) 521
BssAI RCCGGY 1 cut(s) 606
BssECI CCNNGG 3 cut(s) 459, 521, 732
BssMI GATC 9 cut(s) 186, 297, 318, 361, 391, 766, 857, 914, 980
BssT1I CCWWGG 2 cut(s) 521, 732
Bst2UI CCWGG 3 cut(s) 54, 112, 603
Bst4CI ACNGT 2 cut(s) 50, 481
Bst6I CTCTTC 3 cut(s) 333, 375, 821
BstBAI YACGTR 1 cut(s) 543
BstC8I GCNNGC 3 cut(s) 441, 466, 874
BstDEI CTNAG 5 cut(s) 240, 495, 653, 837, 956
BstDSI CCRYGG 2 cut(s) 459, 521
BstF5I GGATG 2 cut(s) 162, 171
BstFNI CGCG 2 cut(s) 461, 876
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 9 cut(s) 189, 300, 321, 364, 394, 769, 860, 917, 983
BstMBI GATC 9 cut(s) 186, 297, 318, 361, 391, 766, 857, 914, 980
BstMCI CGRYCG 1 cut(s) 983
BstMWI GCNNNNNNNGC 6 cut(s) 199, 208, 382, 455, 658, 667
BstNI CCWGG 3 cut(s) 54, 112, 603
BstNSI RCATGY 1 cut(s) 695
BstSCI CCNGG 3 cut(s) 52, 110, 601
BstUI CGCG 2 cut(s) 461, 876
BstX2I RGATCY 1 cut(s) 914
BstYI RGATCY 1 cut(s) 914
BsuRI GGCC 6 cut(s) 520, 606, 803, 872, 884, 969
BtgI CCRYGG 2 cut(s) 459, 521
BtgZI GCGATG 1 cut(s) 891
BtsCI GGATG 2 cut(s) 162, 171
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 1 cut(s) 747
BveI ACCTGC 1 cut(s) 157
Cac8I GCNNGC 3 cut(s) 441, 466, 874
CfoI GCGC 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 606
Cfr13I GGNCC 4 cut(s) 50, 487, 720, 871
Cfr42I CCGCGG 1 cut(s) 462
Csp6I GTAC 2 cut(s) 82, 540
CviAII CATG 6 cut(s) 87, 522, 692, 764, 895, 965
CviQI GTAC 2 cut(s) 82, 540
DdeI CTNAG 5 cut(s) 240, 495, 653, 837, 956
DpnI GATC 9 cut(s) 188, 299, 320, 363, 393, 768, 859, 916, 982
DpnII GATC 9 cut(s) 186, 297, 318, 361, 391, 766, 857, 914, 980
EaeI YGGCCR 3 cut(s) 518, 801, 967
Eam1104I CTCTTC 3 cut(s) 333, 375, 821
EarI CTCTTC 3 cut(s) 333, 375, 821
EciI GGCGGA 1 cut(s) 464
Eco130I CCWWGG 2 cut(s) 521, 732
Eco24I GRGCYC 2 cut(s) 441, 587
Eco47I GGWCC 3 cut(s) 50, 487, 720
Eco57I CTGAAG 2 cut(s) 158, 357
Eco88I CYCGRG 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 214
EcoRII CCWGG 3 cut(s) 52, 110, 601
EcoT14I CCWWGG 2 cut(s) 521, 732
EcoT38I GRGCYC 2 cut(s) 441, 587
ErhI CCWWGG 2 cut(s) 521, 732
FaeI CATG 6 cut(s) 90, 525, 695, 767, 898, 968
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 1 cut(s) 527
FatI CATG 6 cut(s) 86, 521, 691, 763, 894, 964
FauI CCCGC 1 cut(s) 881
FauNDI CATATG 1 cut(s) 576
FbaI TGATCA 1 cut(s) 297
FblI GTMKAC 1 cut(s) 938
Fnu4HI GCNGC 2 cut(s) 459, 462
FokI GGATG 2 cut(s) 169, 178
FriOI GRGCYC 2 cut(s) 441, 587
Fsp4HI GCNGC 2 cut(s) 459, 462
FspBI CTAG 4 cut(s) 153, 194, 465, 588
GlaI GCGC 1 cut(s) 210
GluI GCNGC 2 cut(s) 459, 462
GsaI CCCAGC 2 cut(s) 174, 472
GsuI CTGGAG 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 6 cut(s) 520, 606, 803, 872, 884, 969
HapII CCGG 2 cut(s) 607, 671
HhaI GCGC 1 cut(s) 211
Hin1II CATG 6 cut(s) 90, 525, 695, 767, 898, 968
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HincII GTYRAC 2 cut(s) 46, 892
HindII GTYRAC 2 cut(s) 46, 892
HinfI GANTC 2 cut(s) 133, 417
HpaI GTTAAC 1 cut(s) 892
HpaII CCGG 2 cut(s) 607, 671
HphI GGTGA 1 cut(s) 551
Hpy166II GTNNAC 5 cut(s) 46, 487, 559, 892, 939
Hpy188I TCNGA 9 cut(s) 21, 138, 422, 496, 596, 724, 825, 840, 959
Hpy188III TCNNGA 2 cut(s) 408, 855
Hpy8I GTNNAC 5 cut(s) 46, 487, 559, 892, 939
Hpy99I CGWCG 1 cut(s) 821
HpyAV CCTTC 2 cut(s) 405, 862
HpyCH4III ACNGT 2 cut(s) 50, 481
HpyCH4IV ACGT 2 cut(s) 542, 819
HpyCH4V TGCA 5 cut(s) 180, 284, 760, 907, 945
HpyF10VI GCNNNNNNNGC 6 cut(s) 199, 208, 382, 455, 658, 667
HpyF3I CTNAG 5 cut(s) 240, 495, 653, 837, 956
HpySE526I ACGT 2 cut(s) 542, 819
Hsp92II CATG 6 cut(s) 90, 525, 695, 767, 898, 968
HspAI GCGC 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 297
KspAI GTTAAC 1 cut(s) 892
KspI CCGCGG 1 cut(s) 462
Kzo9I GATC 9 cut(s) 186, 297, 318, 361, 391, 766, 857, 914, 980
LguI GCTCTTC 3 cut(s) 333, 375, 821
LmnI GCTCC 2 cut(s) 658, 733
LweI GCATC 1 cut(s) 715
MaeI CTAG 4 cut(s) 153, 194, 465, 588
MaeII ACGT 2 cut(s) 542, 819
MaeIII GTNAC 3 cut(s) 89, 745, 812
MalI GATC 9 cut(s) 188, 299, 320, 363, 393, 768, 859, 916, 982
MboI GATC 9 cut(s) 186, 297, 318, 361, 391, 766, 857, 914, 980
MboII GAAGA 7 cut(s) 57, 142, 151, 350, 392, 796, 838
MflI RGATCY 1 cut(s) 914
MhlI GDGCHC 2 cut(s) 441, 587
MlsI TGGCCA 2 cut(s) 520, 969
MluCI AATT 2 cut(s) 214, 225
MluNI TGGCCA 2 cut(s) 520, 969
MmeI TCCRAC 1 cut(s) 942
MnlI CCTC 7 cut(s) 120, 504, 510, 621, 667, 874, 987
Mox20I TGGCCA 2 cut(s) 520, 969
MscI TGGCCA 2 cut(s) 520, 969
MseI TTAA 1 cut(s) 891
MslI CAYNNNNRTG 2 cut(s) 20, 575
Msp20I TGGCCA 2 cut(s) 520, 969
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 2 cut(s) 607, 671
MspR9I CCNGG 3 cut(s) 54, 112, 603
Mva1269I GAATGC 1 cut(s) 15
MvaI CCWGG 3 cut(s) 54, 112, 603
MvnI CGCG 2 cut(s) 461, 876
MwoI GCNNNNNNNGC 6 cut(s) 199, 208, 382, 455, 658, 667
NcoI CCATGG 1 cut(s) 521
NdeI CATATG 1 cut(s) 576
NdeII GATC 9 cut(s) 186, 297, 318, 361, 391, 766, 857, 914, 980
NheI GCTAGC 1 cut(s) 464
NlaIII CATG 6 cut(s) 90, 525, 695, 767, 898, 968
NlaIV GGNNCC 2 cut(s) 660, 916
NmeAIII GCCGAG 2 cut(s) 290, 829
NmuCI GTSAC 1 cut(s) 745
NspI RCATGY 1 cut(s) 695
PciI ACATGT 1 cut(s) 691
PciSI GCTCTTC 3 cut(s) 333, 375, 821
PctI GAATGC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 133, 417
PflMI CCANNNNNTGG 1 cut(s) 527
PfoI TCCNGGA 1 cut(s) 52
PkrI GCNGC 2 cut(s) 460, 463
Ple19I CGATCG 1 cut(s) 983
Ppu21I YACGTR 1 cut(s) 543
PscI ACATGT 1 cut(s) 691
Psp6I CCWGG 3 cut(s) 52, 110, 601
PspFI CCCAGC 2 cut(s) 170, 468
PspGI CCWGG 3 cut(s) 52, 110, 601
PspN4I GGNNCC 2 cut(s) 660, 916
PspPI GGNCC 4 cut(s) 50, 487, 720, 871
PsuI RGATCY 1 cut(s) 914
PvuI CGATCG 1 cut(s) 983
RsaI GTAC 2 cut(s) 83, 541
RsaNI GTAC 2 cut(s) 82, 540
RseI CAYNNNNRTG 2 cut(s) 20, 575
SacII CCGCGG 1 cut(s) 462
SapI GCTCTTC 3 cut(s) 333, 375, 821
SaqAI TTAA 1 cut(s) 891
SatI GCNGC 2 cut(s) 459, 462
Sau3AI GATC 9 cut(s) 186, 297, 318, 361, 391, 766, 857, 914, 980
Sau96I GGNCC 4 cut(s) 50, 487, 720, 871
ScrFI CCNGG 3 cut(s) 54, 112, 603
SduI GDGCHC 2 cut(s) 441, 587
SetI ASST 9 cut(s) 113, 151, 387, 470, 545, 654, 722, 822, 979
SfaNI GCATC 1 cut(s) 715
Sfr303I CCGCGG 1 cut(s) 462
SgrBI CCGCGG 1 cut(s) 462
SinI GGWCC 3 cut(s) 50, 487, 720
SmiMI CAYNNNNRTG 2 cut(s) 20, 575
Sse9I AATT 2 cut(s) 214, 225
SsiI CCGC 4 cut(s) 449, 459, 461, 874
SspMI CTAG 4 cut(s) 153, 194, 465, 588
StyD4I CCNGG 3 cut(s) 52, 110, 601
StyI CCWWGG 2 cut(s) 521, 732
TaaI ACNGT 2 cut(s) 50, 481
TaiI ACGT 2 cut(s) 545, 822
TaqI TCGA 3 cut(s) 230, 407, 979
TasI AATT 2 cut(s) 214, 225
TatI WGTACW 1 cut(s) 81
TauI GCSGC 2 cut(s) 461, 464
TfiI GAWTC 2 cut(s) 133, 417
Tru1I TTAA 1 cut(s) 891
Tru9I TTAA 1 cut(s) 891
TscAI CASTG 1 cut(s) 754
TseFI GTSAC 1 cut(s) 745
Tsp45I GTSAC 1 cut(s) 745
TspDTI ATGAA 3 cut(s) 207, 563, 953
TspGWI ACGGA 1 cut(s) 331
TspRI CASTG 1 cut(s) 754
Van91I CCANNNNNTGG 1 cut(s) 527
VpaK11BI GGWCC 3 cut(s) 50, 487, 720
XapI RAATTY 2 cut(s) 214, 225
XceI RCATGY 1 cut(s) 695
XcmI CCANNNNNNNNNTGG 1 cut(s) 528
XmiI GTMKAC 1 cut(s) 938
XspI CTAG 4 cut(s) 153, 194, 465, 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.