Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014638

Physical Location & Seq

Genomic Coordinates Forward (+)

13086878 .. 13087778

Gene Structure 901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG150100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTTGAGCCCTAGTTTCGGAGAGCCAGGCCGGTGTTTTCCCTTGAAAGGGAGGAGTGGCTTTGTTGTGGTCAAGCTAAGGGAGCCTATTGTGCCGGAGGCTATTACTATTGAACATGTTTTGGATAGTGTTGTTGATGACAGGTCCGATGCTCCCAAGGATTGCCGTGTCACTGCTTGGTTGCAACATGATCGGTATGATGGCAAGAAGAATGAGTTTGTTTTGGCCGAGTTCAGTTACGACGTTCGGAAGAGCAATGTTCAGACATTTGGTGTGTCGGGATCGGTGGCGAAGGCCCGCGATGAGGCCGTTGTTAACATGGTGGAGTTGCAGTTTGGATCCAACAATGGAAGCCCCGTTTCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0005819 GO:0005856 GO:0006996 GO:0006997 GO:0007049 GO:0007059 GO:0007127 GO:0008104 GO:0008150 GO:0008360 GO:0009524 GO:0009987 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031967 GO:0031975 GO:0031984 GO:0032878 GO:0033036 GO:0033365 GO:0034397 GO:0034398 GO:0034504 GO:0034613 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043495 GO:0043621 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044821 GO:0045132 GO:0045141 GO:0045143 GO:0048285 GO:0050000 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051276 GO:0051291 GO:0051303 GO:0051321 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065007 GO:0065008 GO:0070192 GO:0070197 GO:0070727 GO:0071840 GO:0090220 GO:0090435 GO:0097240 GO:0098813 GO:0098827 GO:0140013 GO:1903046 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

122

Amino Acids

13.48

Weight (kDa)

5.66

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sad1_UNC	PF07738	5 - 119	1.1e-22	Sad1 / UNC-like C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0014638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13360
rosa_chinensis	RchiOBHm_Chr2g0101131 RchiOBHm_Chr2g0101681
rosa_laevigata	RLG00000017096
rosa_multiflora	Rmu_sc0011183.1_g000009
rosa_roxburghii	Rroxscaffold_2G00141100
rosa_rugosa	Rorug02G0100700 Rorug02G0101400 Rorug02G0101400
rosa_samantha	Rh2AG143900 Rh2BG148900 Rh2BG154300 Rh2CG150000 Rh2CG150100 Rh2CG154600 Rh2DG149400
rosa_wichuraiana	Rw2G011620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	300
AciI	CCGC	1 cut(s)	298
AclWI	GGATC	3 cut(s)	289, 333, 346
AcoI	YGGCCR	1 cut(s)	225
AfiI	CCNNNNNNNGG	4 cut(s)	17, 47, 48, 304
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	46, 113
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
AlwI	GGATC	3 cut(s)	289, 333, 346
AoxI	GGCC	4 cut(s)	28, 225, 294, 306
AspS9I	GGNCC	2 cut(s)	144, 295
AvaII	GGWCC	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	11
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	2 cut(s)	150, 293
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciT130I	CCWGG	1 cut(s)	27
BfaI	CTAG	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	2 cut(s)	144, 295
BmiI	GGNNCC	2 cut(s)	84, 340
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 47, 48, 304
Bse118I	RCCGGY	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	4 cut(s)	17, 47, 48, 304
BseMI	GCAATG	1 cut(s)	262
BseRI	GAGGAG	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	4 cut(s)	30, 227, 296, 308
BsiSI	CCGG	2 cut(s)	31, 95
BslI	CCNNNNNNNGG	4 cut(s)	17, 47, 48, 304
BsnI	GGCC	4 cut(s)	30, 227, 296, 308
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	190, 281, 338
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	4 cut(s)	30, 227, 296, 308
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	2 cut(s)	84, 340
BspPI	GGATC	3 cut(s)	289, 333, 346
BspQI	GCTCTTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	3 cut(s)	190, 281, 338
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	77
BstFNI	CGCG	1 cut(s)	300
BstKTI	GATC	3 cut(s)	193, 284, 341
BstMBI	GATC	3 cut(s)	190, 281, 338
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 91
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	25
BstUI	CGCG	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuRI	GGCC	4 cut(s)	30, 227, 296, 308
BtgZI	GCGATG	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	144, 295
CviAII	CATG	3 cut(s)	116, 188, 319
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	3 cut(s)	192, 283, 340
DpnII	GATC	3 cut(s)	190, 281, 338
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	3 cut(s)	119, 191, 322
FaiI	YATR	4 cut(s)	117, 189, 198, 320
FatI	CATG	3 cut(s)	115, 187, 318
FauI	CCCGC	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	12
HaeIII	GGCC	4 cut(s)	30, 227, 296, 308
HapII	CCGG	2 cut(s)	31, 95
Hin1II	CATG	3 cut(s)	119, 191, 322
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HpaI	GTTAAC	1 cut(s)	316
HpaII	CCGG	2 cut(s)	31, 95
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	4 cut(s)	20, 148, 249, 264
Hpy188III	TCNNGA	1 cut(s)	279
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	2 cut(s)	184, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 91
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	119, 191, 322
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	190, 281, 338
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	2 cut(s)	82, 157
LpnPI	CCDG	5 cut(s)	12, 39, 44, 108, 127
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	169, 236
MalI	GATC	3 cut(s)	192, 283, 340
MboI	GATC	3 cut(s)	190, 281, 338
MboII	GAAGA	2 cut(s)	220, 262
MflI	RGATCY	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	3 cut(s)	45, 91, 298
MseI	TTAA	2 cut(s)	315, 367
MspI	CCGG	2 cut(s)	31, 95
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	82, 91
NdeII	GATC	3 cut(s)	190, 281, 338
NlaIII	CATG	3 cut(s)	119, 191, 322
NlaIV	GGNNCC	2 cut(s)	84, 340
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	119
PciI	ACATGT	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	245
PscI	ACATGT	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	84, 340
PspPI	GGNCC	2 cut(s)	144, 295
PsuI	RGATCY	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	315, 367
Sau3AI	GATC	3 cut(s)	190, 281, 338
Sau96I	GGNCC	2 cut(s)	144, 295
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	3 cut(s)	78, 146, 246
SfaNI	GCATC	1 cut(s)	139
SinI	GGWCC	1 cut(s)	144
SsiI	CCGC	1 cut(s)	298
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	156
TaiI	ACGT	1 cut(s)	246
Tru1I	TTAA	2 cut(s)	315, 367
Tru9I	TTAA	2 cut(s)	315, 367
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	144
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.