FvH4_1g14370

STS14 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012124
Physical Location & Seq
Reverse (-)
8019844 .. 8021340
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14370.t1

Sequence Viewer

Length: 519 bp
ATGGCCCAAACCAGCTTGTCTGTACTAGCAGTGACGCTAGCCATATACTACACCCTCATCTCAGCCTCCGCCGCAGCCGCAGCTCCTCTCTCCGCCGCAGCCACCGAGTACCTTCGAGCACACAACCAAGCCAGAGCCGCCGTCGGCGTCCCACCTCTGCAATGGAGCGAGTCACTCGCCAACGCGACGAGTCGGCTCGTTCGTTACCAGAGGGACAAGATGGGGTGCAACTTCGCCAACCTGACGAGCGGCAAGTACGGCGGGAACCAGCTCTGGGCGAGCGGACAGGTCGTGACGCCGACCATGGTGGTGGACACGTGGGTCAAGGAGAAGGAGTTCTACAACCACACAGATAACACGTGCGTCCCCAACCACCACTGCGGCGTCTACACGCAGGTGGTGTGGCGGAAGTCGCTCGAGCTCGGCTGCGCGCAGGCCACGTGTCCCAAGGACCAGAGCACCTTGTGCGTTTGCTTCTACAATCCTCCTGGGAATTATGTAGGGGAGAGTCCGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP DUF4228

Protein Analysis

173

Amino Acids

18.69

Weight (kDa)

8.15

Isoelectric Point (pI)

24.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 38 - 159 1.1e-17 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66590
fragaria_vesca FvH4_1g14370
malus_domestica MD02G1157200.v1.1 MD02G1157300.v1.1 MD15G1271900.v1.1
prunus_persica Prupe.7G146300_v2.0.a1
pyrus_communis pycom02g12430 pycom02g12440 pycom15g23580
rosa_chinensis RchiOBHm_Chr2g0103071
rosa_laevigata RLG00000017203
rosa_multiflora Rmu_co8460475.1_g000001 Rmu_sc0000388.1_g000013
rosa_rugosa Rorug02G0111900
rosa_samantha Rh2AG160000 Rh2BG166600 Rh2CG166800 Rh2DG165600
rosa_wichuraiana Rw2G012520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
AasI GACNNNNNNGTC 1 cut(s) 320
Acc36I ACCTGC 1 cut(s) 385
AccBSI CCGCTC 2 cut(s) 249, 282
AccI GTMKAC 1 cut(s) 387
AccII CGCG 2 cut(s) 185, 431
AcvI CACGTG 3 cut(s) 318, 360, 441
AcyI GRCGYC 3 cut(s) 147, 296, 384
AdeI CACNNNGTG 1 cut(s) 465
AfaI GTAC 4 cut(s) 24, 110, 257, 515
AfiI CCNNNNNNNGG 1 cut(s) 274
AflIII ACRYGT 3 cut(s) 315, 357, 440
AjnI CCWGG 1 cut(s) 487
AleI CACNNNNGTG 1 cut(s) 395
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 4 cut(s) 15, 83, 271, 421
AluI AGCT 4 cut(s) 15, 83, 271, 421
Alw21I GWGCWC 3 cut(s) 121, 423, 461
Ama87I CYCGRG 1 cut(s) 416
AoxI GGCC 2 cut(s) 3, 435
ApeKI GCWGC 4 cut(s) 74, 80, 98, 426
Asp700I GAANNNNTTC 1 cut(s) 335
AspLEI GCGC 2 cut(s) 431, 433
AspS9I GGNCC 2 cut(s) 4, 451
AsuNHI GCTAGC 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 416
AvaII GGWCC 1 cut(s) 451
BanII GRGCYC 1 cut(s) 423
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
BbrPI CACGTG 3 cut(s) 318, 360, 441
Bbv12I GWGCWC 3 cut(s) 121, 423, 461
BbvI GCAGC 4 cut(s) 86, 92, 110, 413
BccI CCATC 1 cut(s) 214
BceAI ACGGC 2 cut(s) 125, 274
BciT130I CCWGG 1 cut(s) 489
BfaI CTAG 3 cut(s) 26, 38, 517
BfuAI ACCTGC 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 489
Bme18I GGWCC 1 cut(s) 451
BmeT110I CYCGRG 1 cut(s) 416
BmgT120I GGNCC 2 cut(s) 4, 451
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 489
BmtI GCTAGC 1 cut(s) 41
BsaAI YACGTR 3 cut(s) 318, 360, 441
BsaHI GRCGYC 3 cut(s) 147, 296, 384
BsaJI CCNNGG 3 cut(s) 303, 447, 488
BsaXI ACNNNNNCTCC 3 cut(s) 320, 350, 497
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 3 cut(s) 303, 447, 488
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 75
BsePI GCGCGC 1 cut(s) 429
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 4 cut(s) 86, 92, 110, 413
Bsh1236I CGCG 2 cut(s) 185, 431
BshFI GGCC 2 cut(s) 5, 437
BsiHKAI GWGCWC 3 cut(s) 121, 423, 461
BsiHKCI CYCGRG 1 cut(s) 416
BslFI GGGAC 4 cut(s) 134, 227, 350, 429
BslI CCNNNNNNNGG 1 cut(s) 274
BsmFI GGGAC 4 cut(s) 134, 227, 350, 429
BsnI GGCC 2 cut(s) 5, 437
BsoBI CYCGRG 1 cut(s) 416
Bsp1286I GDGCHC 3 cut(s) 121, 423, 461
Bsp19I CCATGG 1 cut(s) 303
BspANI GGCC 2 cut(s) 5, 437
BspCNI CTCAG 1 cut(s) 74
BspFNI CGCG 2 cut(s) 185, 431
BspLI GGNNCC 1 cut(s) 266
BspMI ACCTGC 1 cut(s) 385
BspOI GCTAGC 1 cut(s) 41
BsrBI CCGCTC 2 cut(s) 249, 282
BsrDI GCAATG 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 303, 447, 488
BssHII GCGCGC 1 cut(s) 429
BssNI GRCGYC 3 cut(s) 147, 296, 384
BssT1I CCWWGG 2 cut(s) 303, 447
Bst2UI CCWGG 1 cut(s) 489
BstACI GRCGYC 3 cut(s) 147, 296, 384
BstAPI GCANNNNNTGC 1 cut(s) 465
BstBAI YACGTR 3 cut(s) 318, 360, 441
BstC8I GCNNGC 4 cut(s) 39, 280, 431, 435
BstDEI CTNAG 1 cut(s) 61
BstDSI CCRYGG 1 cut(s) 303
BstFNI CGCG 2 cut(s) 185, 431
BstHHI GCGC 2 cut(s) 431, 433
BstMWI GCNNNNNNNGC 7 cut(s) 71, 77, 80, 137, 258, 412, 465
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 487
BstUI CGCG 2 cut(s) 185, 431
BstV1I GCAGC 4 cut(s) 86, 92, 110, 413
BstXI CCANNNNNNTGG 1 cut(s) 310
BsuRI GGCC 2 cut(s) 5, 437
BtgI CCRYGG 1 cut(s) 303
BtsI GCAGTG 2 cut(s) 36, 376
BtsIMutI CAGTG 2 cut(s) 36, 376
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 4 cut(s) 39, 280, 431, 435
CfoI GCGC 2 cut(s) 431, 433
Cfr13I GGNCC 2 cut(s) 4, 451
CseI GACGC 5 cut(s) 43, 136, 304, 352, 373
Csp6I GTAC 4 cut(s) 23, 109, 256, 514
CviAII CATG 1 cut(s) 304
CviQI GTAC 4 cut(s) 23, 109, 256, 514
DdeI CTNAG 1 cut(s) 61
DraIII CACNNNGTG 1 cut(s) 465
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EciI GGCGGA 3 cut(s) 58, 82, 421
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 2 cut(s) 303, 447
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 451
Eco53kI GAGCTC 1 cut(s) 421
Eco72I CACGTG 3 cut(s) 318, 360, 441
Eco88I CYCGRG 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 2 cut(s) 303, 447
EcoT38I GRGCYC 1 cut(s) 423
ErhI CCWWGG 2 cut(s) 303, 447
FaeI CATG 1 cut(s) 307
FaiI YATR 4 cut(s) 44, 46, 305, 498
FaqI GGGAC 4 cut(s) 134, 227, 350, 429
FatI CATG 1 cut(s) 303
FauI CCCGC 1 cut(s) 254
FblI GTMKAC 1 cut(s) 387
FriOI GRGCYC 1 cut(s) 423
FspBI CTAG 3 cut(s) 26, 38, 517
GlaI GCGC 2 cut(s) 430, 432
HaeIII GGCC 2 cut(s) 5, 437
HgaI GACGC 5 cut(s) 43, 136, 304, 352, 373
HhaI GCGC 2 cut(s) 431, 433
Hin1I GRCGYC 3 cut(s) 147, 296, 384
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 2 cut(s) 429, 431
HinP1I GCGC 2 cut(s) 429, 431
HinfI GANTC 3 cut(s) 170, 190, 508
Hpy166II GTNNAC 2 cut(s) 313, 388
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 2 cut(s) 313, 388
Hpy99I CGWCG 2 cut(s) 146, 190
HpyAV CCTTC 2 cut(s) 122, 325
HpyCH4IV ACGT 3 cut(s) 317, 359, 440
HpyCH4V TGCA 2 cut(s) 160, 228
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 77, 80, 137, 258, 412, 465
HpyF3I CTNAG 1 cut(s) 61
HpySE526I ACGT 3 cut(s) 317, 359, 440
Hsp92I GRCGYC 3 cut(s) 147, 296, 384
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 2 cut(s) 429, 431
LmnI GCTCC 2 cut(s) 88, 165
Lsp1109I GCAGC 4 cut(s) 86, 92, 110, 413
MaeI CTAG 3 cut(s) 26, 38, 517
MaeII ACGT 3 cut(s) 317, 359, 440
MaeIII GTNAC 4 cut(s) 31, 171, 203, 292
MbiI CCGCTC 2 cut(s) 249, 282
MhlI GDGCHC 3 cut(s) 121, 423, 461
MluCI AATT 1 cut(s) 493
MlyI GAGTC 3 cut(s) 179, 199, 517
MnlI CCTC 6 cut(s) 65, 76, 96, 165, 204, 495
MroXI GAANNNNTTC 1 cut(s) 335
MslI CAYNNNNRTG 2 cut(s) 308, 395
MspR9I CCNGG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 489
MvnI CGCG 2 cut(s) 185, 431
MwoI GCNNNNNNNGC 7 cut(s) 71, 77, 80, 137, 258, 412, 465
NcoI CCATGG 1 cut(s) 303
NheI GCTAGC 1 cut(s) 37
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 1 cut(s) 266
NmeAIII GCCGAG 1 cut(s) 402
NmuCI GTSAC 3 cut(s) 31, 171, 292
OliI CACNNNNGTG 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 416
PaqCI CACCTGC 1 cut(s) 385
PauI GCGCGC 1 cut(s) 429
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 335
PleI GAGTC 3 cut(s) 178, 198, 516
PmaCI CACGTG 3 cut(s) 318, 360, 441
PmlI CACGTG 3 cut(s) 318, 360, 441
PpsI GAGTC 3 cut(s) 178, 198, 516
Ppu21I YACGTR 3 cut(s) 318, 360, 441
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 487
PspCI CACGTG 3 cut(s) 318, 360, 441
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 2 cut(s) 4, 451
PspXI VCTCGAGB 1 cut(s) 416
PteI GCGCGC 1 cut(s) 429
RsaI GTAC 4 cut(s) 24, 110, 257, 515
RsaNI GTAC 4 cut(s) 23, 109, 256, 514
RseI CAYNNNNRTG 2 cut(s) 308, 395
SacI GAGCTC 1 cut(s) 423
Sau96I GGNCC 2 cut(s) 4, 451
SchI GAGTC 3 cut(s) 179, 199, 517
ScrFI CCNGG 1 cut(s) 489
SduI GDGCHC 3 cut(s) 121, 423, 461
Sfr274I CTCGAG 1 cut(s) 416
SinI GGWCC 1 cut(s) 451
SlaI CTCGAG 1 cut(s) 416
SmiMI CAYNNNNRTG 2 cut(s) 308, 395
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 1 cut(s) 493
SspMI CTAG 3 cut(s) 26, 38, 517
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 487
StyI CCWWGG 2 cut(s) 303, 447
TaiI ACGT 3 cut(s) 320, 362, 443
TaqI TCGA 2 cut(s) 115, 417
TasI AATT 1 cut(s) 493
TatI WGTACW 1 cut(s) 22
TauI GCSGC 6 cut(s) 74, 80, 98, 140, 252, 384
TscAI CASTG 2 cut(s) 36, 383
TseFI GTSAC 3 cut(s) 31, 171, 292
TseI GCWGC 4 cut(s) 74, 80, 98, 426
Tsp45I GTSAC 3 cut(s) 31, 171, 292
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 2 cut(s) 36, 383
VpaK11BI GGWCC 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 159
XhoI CTCGAG 1 cut(s) 416
XmiI GTMKAC 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 3 cut(s) 26, 38, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.