MD02G1157300.v1.1

STS14 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012124
Physical Location & Seq
Reverse (-)
13151185 .. 13151403
219 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1157300.v1.1.491

Sequence Viewer

Length: 219 bp
ATGCTGCGCATGGCGTTGGAAAACTGGGTGGAGGAGAAGCAGTACTACGACCACGACAATAATTCTTGTGCACCAAATAATCGTTCGTACACGCAGGTTGTGTGGAGAAAGTCCTTGGAGTTGGGGTGTGTTGAAGCCACGTCTGTCAAGGAGCAGAGGAGTCTTACTGTTTGTTTTTATAATCCTCCGGGAAACTTTGAAGGGGAGAGTCCCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

73

Amino Acids

8.42

Weight (kDa)

4.97

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66590
fragaria_vesca FvH4_1g14370
malus_domestica MD02G1157200.v1.1 MD02G1157300.v1.1 MD15G1271900.v1.1
prunus_persica Prupe.7G146300_v2.0.a1
pyrus_communis pycom02g12430 pycom02g12440 pycom15g23580
rosa_chinensis RchiOBHm_Chr2g0103071
rosa_laevigata RLG00000017203
rosa_multiflora Rmu_co8460475.1_g000001 Rmu_sc0000388.1_g000013
rosa_rugosa Rorug02G0111900
rosa_samantha Rh2AG160000 Rh2BG166600 Rh2CG166800 Rh2DG165600
rosa_wichuraiana Rw2G012520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
Acc16I TGCGCA 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 85
AfaI GTAC 2 cut(s) 44, 89
AgsI TTSAA 2 cut(s) 134, 200
AjiI CACGTC 1 cut(s) 141
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
Alw21I GWGCWC 1 cut(s) 73
Alw44I GTGCAC 1 cut(s) 69
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 73
BarI GAAGNNNNNNTAC 2 cut(s) 29, 61
Bbv12I GWGCWC 1 cut(s) 73
BcnI CCSGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 217
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 189
BmgBI CACGTC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 189
BmrI ACTGGG 1 cut(s) 34
BmuI ACTGGG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 114
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 110, 140
Bse1I ACTGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 2 cut(s) 47, 172
BseSI GKGCMC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 73
BspMI ACCTGC 1 cut(s) 85
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 169
BstHHI GCGC 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 73
BtrI CACGTC 1 cut(s) 141
BveI ACCTGC 1 cut(s) 85
CfoI GCGC 1 cut(s) 9
Csp6I GTAC 2 cut(s) 43, 88
CviAII CATG 1 cut(s) 10
CviJI RGCY 1 cut(s) 137
CviKI_1 RGCY 1 cut(s) 137
CviQI GTAC 2 cut(s) 43, 88
Eco130I CCWWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 13
FaiI YATR 2 cut(s) 11, 180
FaqI GGGAC 1 cut(s) 195
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 217
FspI TGCGCA 1 cut(s) 8
GlaI GCGC 1 cut(s) 8
GluI GCNGC 1 cut(s) 5
HapII CCGG 1 cut(s) 188
HhaI GCGC 1 cut(s) 9
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 2 cut(s) 160, 208
HpaII CCGG 1 cut(s) 188
Hpy166II GTNNAC 2 cut(s) 71, 90
Hpy8I GTNNAC 2 cut(s) 71, 90
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 3 cut(s) 10, 80, 201
MaeI CTAG 1 cut(s) 217
MaeII ACGT 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 1 cut(s) 61
MlyI GAGTC 2 cut(s) 169, 217
MnlI CCTC 3 cut(s) 25, 150, 195
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 189
NciI CCSGG 1 cut(s) 189
NlaIII CATG 1 cut(s) 13
NsbI TGCGCA 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 2 cut(s) 168, 216
PpsI GAGTC 2 cut(s) 168, 216
PsiI TTATAA 1 cut(s) 180
RsaI GTAC 2 cut(s) 44, 89
RsaNI GTAC 2 cut(s) 43, 88
SatI GCNGC 1 cut(s) 5
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 2 cut(s) 169, 217
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 73
SetI ASST 2 cut(s) 99, 143
Sse9I AATT 1 cut(s) 61
SspMI CTAG 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 143
TasI AATT 1 cut(s) 61
TatI WGTACW 1 cut(s) 42
TseI GCWGC 1 cut(s) 4
VneI GTGCAC 1 cut(s) 69
XspI CTAG 1 cut(s) 217
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.