Prupe.7G146300_v2.0.a1

STS14 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012124
Physical Location & Seq
Forward (+)
15937401 .. 15942787
5387 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G146300.1

Sequence Viewer

Length: 780 bp
ATGGGCGCTTGTGCTTCCACTCCGACGAGGACAAGAAATGGAAGCAGAGGAGGACCGGCAGGATCAGATATGATCAGACGGGCGCCAAGCAGCATAGTGATCCACGTGGACGGTCGGATGCAGGAGTTGAAGCTACCAACGCAAGCCAAGCACATAACTTCGCAGAATCCCAATCATTTCCTCTGCAACTCCGAGACCATGTCTGTCGGGACGTGCGTGCCTAACGTGCCTGAAGAGGAGGAGCTCCAACCGGGCCAAATTTACTTCCTGTTGCCACTCTGTGAAGCCCAGAAGCCGCTCTCTCTCCCGGACCTCTGCGCTCTGGCAATCAAGGCCGCCTCCGCATTAGGCAAAGATGCCACAGAATACCTCAAAGCTCACAACCAAGCCAGAGCTGCAGTCGGCGTTGAGCCTCTCAAGTGGAGTGAGTTTCTGGCCAATGCCACAAGCAGACTTGTGAGGTACCAAAGAGACAACAAAGCCTGCAACTTTGCTAACCTCACCAGTGGCAGCAAGTATGGAGGCAATCAGCTGTGGGCAAGTGGCCAGTCAGTCACACCAACCATGGTTGTGGACACGTGGCTCAAGGAGAAGGACTTCTACAACCACACTGGCAACTCTTGTGTTCCAAATCATAGTTGTGGTGTGTACACTCAGGTTGTGTGGAAGAAGTCTCTGGAGTTGGGCTGTGCACAGGCCACCTGTGTGAAGGATCAGAGCAGTTTGAGCATTTGTTTTTATAACCCTCCTGGGAATGTTATTGGGGAAAGCCCCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP DUF4228

Protein Analysis

260

Amino Acids

28.08

Weight (kDa)

8.26

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66590
fragaria_vesca FvH4_1g14370
malus_domestica MD02G1157200.v1.1 MD02G1157300.v1.1 MD15G1271900.v1.1
prunus_persica Prupe.7G146300_v2.0.a1
pyrus_communis pycom02g12430 pycom02g12440 pycom15g23580
rosa_chinensis RchiOBHm_Chr2g0103071
rosa_laevigata RLG00000017203
rosa_multiflora Rmu_co8460475.1_g000001 Rmu_sc0000388.1_g000013
rosa_rugosa Rorug02G0111900
rosa_samantha Rh2AG160000 Rh2BG166600 Rh2CG166800 Rh2DG165600
rosa_wichuraiana Rw2G012520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 741
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 2 cut(s) 82, 462
AccBSI CCGCTC 1 cut(s) 298
AciI CCGC 3 cut(s) 296, 336, 342
AclWI GGATC 3 cut(s) 70, 94, 720
AcoI YGGCCR 2 cut(s) 435, 544
AcsI RAATTY 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 252
AcvI CACGTG 2 cut(s) 106, 579
AcyI GRCGYC 1 cut(s) 83
AdeI CACNNNGTG 1 cut(s) 281
AfaI GTAC 2 cut(s) 464, 650
AflIII ACRYGT 1 cut(s) 576
AgsI TTSAA 1 cut(s) 130
AjiI CACGTC 1 cut(s) 213
AjnI CCWGG 1 cut(s) 748
AleI CACNNNNGTG 1 cut(s) 704
AluBI AGCT 5 cut(s) 133, 244, 377, 395, 532
AluI AGCT 5 cut(s) 133, 244, 377, 395, 532
Alw21I GWGCWC 2 cut(s) 246, 694
Alw26I GTCTC 3 cut(s) 188, 465, 678
Alw44I GTGCAC 1 cut(s) 690
AlwI GGATC 3 cut(s) 70, 94, 720
AoxI GGCC 5 cut(s) 253, 333, 435, 544, 696
ApaLI GTGCAC 1 cut(s) 690
ApeKI GCWGC 3 cut(s) 90, 395, 510
ApoI RAATTY 1 cut(s) 258
Asp700I GAANNNNTTC 1 cut(s) 596
Asp718I GGTACC 1 cut(s) 462
AspLEI GCGC 3 cut(s) 8, 85, 320
AspS9I GGNCC 3 cut(s) 53, 253, 310
AsuC2I CCSGG 2 cut(s) 252, 308
AsuHPI GGTGA 1 cut(s) 493
AvaII GGWCC 2 cut(s) 53, 310
BaeGI GKGCMC 1 cut(s) 694
BalI TGGCCA 2 cut(s) 437, 546
BanI GGYRCC 2 cut(s) 82, 462
BanII GRGCYC 1 cut(s) 246
BarI GAAGNNNNNNTAC 2 cut(s) 584, 616
BbrPI CACGTG 2 cut(s) 106, 579
Bbv12I GWGCWC 2 cut(s) 246, 694
BbvI GCAGC 3 cut(s) 102, 382, 522
BciT130I CCWGG 1 cut(s) 750
BclI TGATCA 1 cut(s) 72
BcnI CCSGG 2 cut(s) 252, 308
BcoDI GTCTC 3 cut(s) 188, 465, 678
BfaI CTAG 1 cut(s) 778
BfmI CTRYAG 1 cut(s) 396
BfoI RGCGCY 2 cut(s) 9, 86
BisI GCNGC 5 cut(s) 91, 296, 336, 396, 511
BlsI GCNGC 5 cut(s) 92, 297, 337, 397, 512
Bme1390I CCNGG 3 cut(s) 252, 308, 750
Bme18I GGWCC 2 cut(s) 53, 310
BmgBI CACGTC 1 cut(s) 213
BmgT120I GGNCC 3 cut(s) 53, 253, 310
BmiI GGNNCC 2 cut(s) 84, 464
BmrFI CCNGG 3 cut(s) 252, 308, 750
BmsI GCATC 2 cut(s) 108, 346
BpmI CTGGAG 1 cut(s) 698
BpuEI CTTGAG 2 cut(s) 401, 569
BpuMI CCSGG 2 cut(s) 252, 308
BsaAI YACGTR 2 cut(s) 106, 579
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 564, 749
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 3 cut(s) 504, 547, 616
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 2 cut(s) 564, 749
BseGI GGATG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 668
BseNI ACTGG 3 cut(s) 504, 547, 616
BseRI GAGGAG 3 cut(s) 63, 251, 254
BseSI GKGCMC 1 cut(s) 694
BseXI GCAGC 3 cut(s) 102, 382, 522
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 5 cut(s) 255, 335, 437, 546, 698
BshNI GGYRCC 2 cut(s) 82, 462
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 2 cut(s) 246, 694
BsiSI CCGG 3 cut(s) 56, 251, 308
BslFI GGGAC 1 cut(s) 223
BsmAI GTCTC 3 cut(s) 188, 465, 678
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 5 cut(s) 255, 335, 437, 546, 698
Bso31I GGTCTC 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 246, 694
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 4 cut(s) 62, 72, 99, 712
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 3 cut(s) 296, 336, 342
BspANI GGCC 5 cut(s) 255, 335, 437, 546, 698
BspCNI CTCAG 1 cut(s) 667
BspLI GGNNCC 2 cut(s) 84, 464
BspMAI CTGCAG 1 cut(s) 400
BspPI GGATC 3 cut(s) 70, 94, 720
BspT107I GGYRCC 2 cut(s) 82, 462
BspTNI GGTCTC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 55
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 3 cut(s) 504, 547, 616
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 564, 749
BssMI GATC 4 cut(s) 62, 72, 99, 712
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 564
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 83
BstAUI TGTACA 1 cut(s) 648
BstBAI YACGTR 2 cut(s) 106, 579
BstC8I GCNNGC 3 cut(s) 144, 218, 484
BstDEI CTNAG 1 cut(s) 654
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 1 cut(s) 123
BstH2I RGCGCY 2 cut(s) 9, 86
BstHHI GCGC 3 cut(s) 8, 85, 320
BstKTI GATC 4 cut(s) 65, 75, 102, 715
BstMAI GTCTC 3 cut(s) 188, 465, 678
BstMBI GATC 4 cut(s) 62, 72, 99, 712
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 7 cut(s) 139, 148, 226, 332, 341, 395, 726
BstNI CCWGG 1 cut(s) 750
BstSCI CCNGG 3 cut(s) 250, 306, 748
BstSFI CTRYAG 1 cut(s) 396
BstSLI GKGCMC 1 cut(s) 694
BstV1I GCAGC 3 cut(s) 102, 382, 522
BstXI CCANNNNNNTGG 1 cut(s) 571
BsuRI GGCC 5 cut(s) 255, 335, 437, 546, 698
BtgI CCRYGG 1 cut(s) 564
BtrI CACGTC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 511, 609
Cac8I GCNNGC 3 cut(s) 144, 218, 484
CfoI GCGC 3 cut(s) 8, 85, 320
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 53, 253, 310
Csp6I GTAC 2 cut(s) 463, 649
CviAII CATG 2 cut(s) 199, 565
CviQI GTAC 2 cut(s) 463, 649
DdeI CTNAG 1 cut(s) 654
DinI GGCGCC 1 cut(s) 84
DpnI GATC 4 cut(s) 64, 74, 101, 714
DpnII GATC 4 cut(s) 62, 72, 99, 712
DraIII CACNNNGTG 1 cut(s) 281
EaeI YGGCCR 2 cut(s) 435, 544
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Ecl136II GAGCTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 2 cut(s) 53, 310
Eco53kI GAGCTC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 252
Eco72I CACGTG 2 cut(s) 106, 579
EcoICRI GAGCTC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 748
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 246
EgeI GGCGCC 1 cut(s) 84
EheI GGCGCC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 2 cut(s) 202, 568
FaiI YATR 8 cut(s) 71, 95, 155, 200, 519, 566, 636, 741
FaqI GGGAC 1 cut(s) 223
FatI CATG 2 cut(s) 198, 564
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 5 cut(s) 91, 296, 336, 396, 511
FokI GGATG 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 5 cut(s) 91, 296, 336, 396, 511
FspBI CTAG 1 cut(s) 778
GlaI GCGC 3 cut(s) 7, 84, 319
GluI GCNGC 5 cut(s) 91, 296, 336, 396, 511
GsuI CTGGAG 1 cut(s) 698
HaeII RGCGCY 2 cut(s) 9, 86
HaeIII GGCC 5 cut(s) 255, 335, 437, 546, 698
HapII CCGG 3 cut(s) 56, 251, 308
HhaI GCGC 3 cut(s) 8, 85, 320
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 2 cut(s) 202, 568
Hin6I GCGC 3 cut(s) 6, 83, 318
HinP1I GCGC 3 cut(s) 6, 83, 318
HinfI GANTC 1 cut(s) 166
HpaII CCGG 3 cut(s) 56, 251, 308
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 5 cut(s) 109, 574, 649, 651, 692
Hpy188I TCNGA 6 cut(s) 24, 67, 77, 117, 193, 717
Hpy188III TCNNGA 2 cut(s) 208, 677
Hpy8I GTNNAC 5 cut(s) 109, 574, 649, 651, 692
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 586, 703
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 4 cut(s) 105, 212, 225, 578
HpyCH4V TGCA 5 cut(s) 121, 186, 398, 486, 692
HpyF10VI GCNNNNNNNGC 7 cut(s) 139, 148, 226, 332, 341, 395, 726
HpyF3I CTNAG 1 cut(s) 654
HpySE526I ACGT 4 cut(s) 105, 212, 225, 578
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 2 cut(s) 202, 568
HspAI GCGC 3 cut(s) 6, 83, 318
KasI GGCGCC 1 cut(s) 82
KpnI GGTACC 1 cut(s) 466
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 4 cut(s) 62, 72, 99, 712
LmnI GCTCC 2 cut(s) 241, 249
Lsp1109I GCAGC 3 cut(s) 102, 382, 522
LweI GCATC 2 cut(s) 108, 346
MaeI CTAG 1 cut(s) 778
MaeII ACGT 4 cut(s) 105, 212, 225, 578
MaeIII GTNAC 1 cut(s) 553
MalI GATC 4 cut(s) 64, 74, 101, 714
MbiI CCGCTC 1 cut(s) 298
MboI GATC 4 cut(s) 62, 72, 99, 712
MboII GAAGA 2 cut(s) 245, 679
MhlI GDGCHC 2 cut(s) 246, 694
MlsI TGGCCA 2 cut(s) 437, 546
MluCI AATT 1 cut(s) 258
MluNI TGGCCA 2 cut(s) 437, 546
Mly113I GGCGCC 1 cut(s) 83
MmeI TCCRAC 3 cut(s) 47, 95, 271
Mox20I TGGCCA 2 cut(s) 437, 546
MroXI GAANNNNTTC 1 cut(s) 596
MscI TGGCCA 2 cut(s) 437, 546
MslI CAYNNNNRTG 3 cut(s) 569, 639, 704
Msp20I TGGCCA 2 cut(s) 437, 546
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 3 cut(s) 56, 251, 308
MspR9I CCNGG 3 cut(s) 252, 308, 750
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 7 cut(s) 139, 148, 226, 332, 341, 395, 726
NarI GGCGCC 1 cut(s) 83
NciI CCSGG 2 cut(s) 252, 308
NcoI CCATGG 1 cut(s) 564
NdeII GATC 4 cut(s) 62, 72, 99, 712
NlaIII CATG 2 cut(s) 202, 568
NlaIV GGNNCC 2 cut(s) 84, 464
NmuCI GTSAC 1 cut(s) 553
OliI CACNNNNGTG 1 cut(s) 704
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 596
PfeI GAWTC 1 cut(s) 166
PflFI GACNNNGTC 1 cut(s) 199
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 5 cut(s) 92, 297, 337, 397, 512
PluTI GGCGCC 1 cut(s) 86
PmaCI CACGTG 2 cut(s) 106, 579
PmlI CACGTG 2 cut(s) 106, 579
Ppu21I YACGTR 2 cut(s) 106, 579
PsiI TTATAA 1 cut(s) 741
Psp124BI GAGCTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 748
PspCI CACGTG 2 cut(s) 106, 579
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 2 cut(s) 84, 464
PspPI GGNCC 3 cut(s) 53, 253, 310
PstI CTGCAG 1 cut(s) 400
PsyI GACNNNGTC 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 532
RsaI GTAC 2 cut(s) 464, 650
RsaNI GTAC 2 cut(s) 463, 649
RseI CAYNNNNRTG 3 cut(s) 569, 639, 704
SacI GAGCTC 1 cut(s) 246
SatI GCNGC 5 cut(s) 91, 296, 336, 396, 511
Sau3AI GATC 4 cut(s) 62, 72, 99, 712
Sau96I GGNCC 3 cut(s) 53, 253, 310
ScrFI CCNGG 3 cut(s) 252, 308, 750
SduI GDGCHC 2 cut(s) 246, 694
SfaNI GCATC 2 cut(s) 108, 346
SfcI CTRYAG 1 cut(s) 396
SfoI GGCGCC 1 cut(s) 84
SinI GGWCC 2 cut(s) 53, 310
SmiMI CAYNNNNRTG 3 cut(s) 569, 639, 704
SmlI CTYRAG 2 cut(s) 416, 584
SmoI CTYRAG 2 cut(s) 416, 584
Sse9I AATT 1 cut(s) 258
SsiI CCGC 3 cut(s) 296, 336, 342
SspDI GGCGCC 1 cut(s) 82
SspMI CTAG 1 cut(s) 778
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 3 cut(s) 250, 306, 748
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 4 cut(s) 108, 215, 228, 581
TasI AATT 1 cut(s) 258
TatI WGTACW 1 cut(s) 648
TauI GCSGC 2 cut(s) 298, 338
TfiI GAWTC 1 cut(s) 166
TscAI CASTG 2 cut(s) 511, 616
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 3 cut(s) 90, 395, 510
Tsp45I GTSAC 1 cut(s) 553
TspRI CASTG 2 cut(s) 511, 616
Tth111I GACNNNGTC 1 cut(s) 199
VneI GTGCAC 1 cut(s) 690
VpaK11BI GGWCC 2 cut(s) 53, 310
XapI RAATTY 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 596
XspI CTAG 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.