pycom15g23580

STS14 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012124
Physical Location & Seq
Reverse (-)
17729733 .. 17730254
522 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g23580.1

Sequence Viewer

Length: 522 bp
ATGGCTCATCATCATCCCTTGCTAGTCCTAGCAGCCCTGGCTATAGCCATCAGCTCTGTCCATGTTGCAGCGGCTCAGGCGCCAAGCTCCAACCCTTCAGCCAGAGAGTACCTCCAAGCTCACAACCAAGCCAGAGCCGCAGTGGGTGTAGAGCCGCTCAAGTGGAGTGAGTCATTGGCCAATGCAACAAGCAGGCTAGTGAGGTACCAAAGAAACAACCAAGCCTGCAACTTTGCTAACCTCACCAGTGGCAGCAAGTATGGAGCCAATCAGCTGTGGGCAAGTGGGCAGTCAGTGAGTCCAACCATGGTTGTGGACACTTGGGTCAAAGAGAAGGACTTCTACAACCACAGTGGAAACTCCTGCGTGCCAAATCACAGGTGTGGTGTGTACACCCAGGTGGTGTGGAGGAAGTCTTTGGAGCTTGGGTGTGCTCAGGCTACATGTGTCAAAGAACAGAGCAGCTTGAGTATTTGTTTTTATAATCCTCCTGGGAATGTTGTAGGGGAGCGCCCGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP DUF4228

Protein Analysis

174

Amino Acids

18.81

Weight (kDa)

8.97

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 38 - 154 2.7e-15 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66590
fragaria_vesca FvH4_1g14370
malus_domestica MD02G1157200.v1.1 MD02G1157300.v1.1 MD15G1271900.v1.1
prunus_persica Prupe.7G146300_v2.0.a1
pyrus_communis pycom02g12430 pycom02g12440 pycom15g23580
rosa_chinensis RchiOBHm_Chr2g0103071
rosa_laevigata RLG00000017203
rosa_multiflora Rmu_co8460475.1_g000001 Rmu_sc0000388.1_g000013
rosa_rugosa Rorug02G0111900
rosa_samantha Rh2AG160000 Rh2BG166600 Rh2CG166800 Rh2DG165600
rosa_wichuraiana Rw2G012520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
AasI GACNNNNNNGTC 1 cut(s) 323
Acc65I GGTACC 1 cut(s) 204
AccB1I GGYRCC 2 cut(s) 79, 204
AccBSI CCGCTC 1 cut(s) 157
AciI CCGC 3 cut(s) 71, 138, 155
AcoI YGGCCR 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 4 cut(s) 110, 206, 392, 518
AflIII ACRYGT 1 cut(s) 443
AjnI CCWGG 3 cut(s) 36, 396, 490
AleI CACNNNNGTG 2 cut(s) 381, 398
AluBI AGCT 6 cut(s) 54, 87, 119, 274, 424, 465
AluI AGCT 6 cut(s) 54, 87, 119, 274, 424, 465
Alw21I GWGCWC 1 cut(s) 436
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 4 cut(s) 32, 68, 252, 462
Asp700I GAANNNNTTC 1 cut(s) 338
Asp718I GGTACC 1 cut(s) 204
AspLEI GCGC 2 cut(s) 82, 513
AsuHPI GGTGA 1 cut(s) 235
BalI TGGCCA 1 cut(s) 179
BanI GGYRCC 2 cut(s) 79, 204
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 4 cut(s) 44, 80, 264, 474
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 3 cut(s) 38, 398, 492
BfaI CTAG 3 cut(s) 23, 29, 197
BfmI CTRYAG 1 cut(s) 42
BfoI RGCGCY 2 cut(s) 83, 514
BisI GCNGC 7 cut(s) 33, 69, 72, 138, 155, 253, 463
BlsI GCNGC 7 cut(s) 34, 70, 73, 139, 156, 254, 464
Bme1390I CCNGG 3 cut(s) 38, 398, 492
BmiI GGNNCC 3 cut(s) 81, 206, 265
BmrFI CCNGG 3 cut(s) 38, 398, 492
BplI GAGNNNNNCTC 2 cut(s) 96, 128
Bpu10I CCTNAGC 2 cut(s) 75, 435
BpuEI CTTGAG 2 cut(s) 143, 487
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 36, 306, 396, 491
BsaXI ACNNNNNCTCC 3 cut(s) 413, 443, 500
Bse1I ACTGG 1 cut(s) 246
BseBI CCWGG 3 cut(s) 38, 398, 492
BseDI CCNNGG 4 cut(s) 36, 306, 396, 491
BseGI GGATG 1 cut(s) 13
BseMII CTCAG 2 cut(s) 89, 449
BseNI ACTGG 1 cut(s) 246
BseXI GCAGC 4 cut(s) 44, 80, 264, 474
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 2 cut(s) 79, 204
BsiHKAI GWGCWC 1 cut(s) 436
BsnI GGCC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 436
Bsp1407I TGTACA 1 cut(s) 390
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 3 cut(s) 71, 138, 155
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 88, 448
BspLI GGNNCC 3 cut(s) 81, 206, 265
BspT107I GGYRCC 2 cut(s) 79, 204
BsrBI CCGCTC 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 4 cut(s) 36, 306, 396, 491
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 3 cut(s) 38, 398, 492
Bst4CI ACNGT 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 80
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 3 cut(s) 194, 226, 368
BstDEI CTNAG 2 cut(s) 75, 435
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 13
BstH2I RGCGCY 2 cut(s) 83, 514
BstHHI GCGC 2 cut(s) 82, 513
BstMWI GCNNNNNNNGC 3 cut(s) 38, 77, 137
BstNI CCWGG 3 cut(s) 38, 398, 492
BstNSI RCATGY 1 cut(s) 447
BstSCI CCNGG 3 cut(s) 36, 396, 490
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 4 cut(s) 44, 80, 264, 474
BstXI CCANNNNNNTGG 1 cut(s) 313
BsuRI GGCC 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 4 cut(s) 147, 253, 300, 358
Cac8I GCNNGC 3 cut(s) 194, 226, 368
CfoI GCGC 2 cut(s) 82, 513
Csp6I GTAC 4 cut(s) 109, 205, 391, 517
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 3 cut(s) 62, 307, 444
CviQI GTAC 4 cut(s) 109, 205, 391, 517
DdeI CTNAG 2 cut(s) 75, 435
DinI GGCGCC 1 cut(s) 81
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 306
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 3 cut(s) 36, 396, 490
EcoT14I CCWWGG 1 cut(s) 306
EgeI GGCGCC 1 cut(s) 81
EheI GGCGCC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 65, 310, 447
FaiI YATR 6 cut(s) 44, 63, 261, 308, 445, 483
FatI CATG 3 cut(s) 61, 306, 443
Fnu4HI GCNGC 7 cut(s) 33, 69, 72, 138, 155, 253, 463
Fsp4HI GCNGC 7 cut(s) 33, 69, 72, 138, 155, 253, 463
FspBI CTAG 3 cut(s) 23, 29, 197
GlaI GCGC 2 cut(s) 81, 512
GluI GCNGC 7 cut(s) 33, 69, 72, 138, 155, 253, 463
HaeII RGCGCY 2 cut(s) 83, 514
HaeIII GGCC 1 cut(s) 179
HhaI GCGC 2 cut(s) 82, 513
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 3 cut(s) 65, 310, 447
Hin6I GCGC 2 cut(s) 80, 511
HinP1I GCGC 2 cut(s) 80, 511
HinfI GANTC 2 cut(s) 170, 298
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 3 cut(s) 316, 391, 393
Hpy8I GTNNAC 3 cut(s) 316, 391, 393
HpyAV CCTTC 2 cut(s) 105, 328
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4V TGCA 3 cut(s) 68, 185, 228
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 77, 137
HpyF3I CTNAG 2 cut(s) 75, 435
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 65, 310, 447
HspAI GCGC 2 cut(s) 80, 511
KasI GGCGCC 1 cut(s) 79
KpnI GGTACC 1 cut(s) 208
LmnI GCTCC 4 cut(s) 92, 263, 421, 508
Lsp1109I GCAGC 4 cut(s) 44, 80, 264, 474
MaeI CTAG 3 cut(s) 23, 29, 197
MbiI CCGCTC 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 436
MlsI TGGCCA 1 cut(s) 179
MluNI TGGCCA 1 cut(s) 179
Mly113I GGCGCC 1 cut(s) 80
MlyI GAGTC 2 cut(s) 179, 307
MmeI TCCRAC 2 cut(s) 114, 326
MnlI CCTC 5 cut(s) 122, 195, 251, 402, 498
Mox20I TGGCCA 1 cut(s) 179
MroXI GAANNNNTTC 1 cut(s) 338
MscI TGGCCA 1 cut(s) 179
MslI CAYNNNNRTG 3 cut(s) 311, 381, 398
Msp20I TGGCCA 1 cut(s) 179
MspA1I CMGCKG 2 cut(s) 71, 274
MspR9I CCNGG 3 cut(s) 38, 398, 492
MvaI CCWGG 3 cut(s) 38, 398, 492
MwoI GCNNNNNNNGC 3 cut(s) 38, 77, 137
NarI GGCGCC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 306
NlaIII CATG 3 cut(s) 65, 310, 447
NlaIV GGNNCC 3 cut(s) 81, 206, 265
NspI RCATGY 1 cut(s) 447
OliI CACNNNNGTG 2 cut(s) 381, 398
PciI ACATGT 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 338
PkrI GCNGC 7 cut(s) 34, 70, 73, 139, 156, 254, 464
PleI GAGTC 2 cut(s) 178, 306
PluTI GGCGCC 1 cut(s) 83
PpsI GAGTC 2 cut(s) 178, 306
PscI ACATGT 1 cut(s) 443
PsiI TTATAA 1 cut(s) 483
Psp6I CCWGG 3 cut(s) 36, 396, 490
PspGI CCWGG 3 cut(s) 36, 396, 490
PspN4I GGNNCC 3 cut(s) 81, 206, 265
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 4 cut(s) 110, 206, 392, 518
RsaNI GTAC 4 cut(s) 109, 205, 391, 517
RseI CAYNNNNRTG 3 cut(s) 311, 381, 398
SatI GCNGC 7 cut(s) 33, 69, 72, 138, 155, 253, 463
SchI GAGTC 2 cut(s) 179, 307
ScrFI CCNGG 3 cut(s) 38, 398, 492
SduI GDGCHC 1 cut(s) 436
SfcI CTRYAG 1 cut(s) 42
SfoI GGCGCC 1 cut(s) 81
SmiMI CAYNNNNRTG 3 cut(s) 311, 381, 398
SmlI CTYRAG 2 cut(s) 158, 466
SmoI CTYRAG 2 cut(s) 158, 466
SsiI CCGC 3 cut(s) 71, 138, 155
SspDI GGCGCC 1 cut(s) 79
SspMI CTAG 3 cut(s) 23, 29, 197
StyD4I CCNGG 3 cut(s) 36, 396, 490
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 353
TatI WGTACW 1 cut(s) 390
TauI GCSGC 3 cut(s) 74, 140, 157
TscAI CASTG 4 cut(s) 147, 253, 300, 358
TseI GCWGC 4 cut(s) 32, 68, 252, 462
TspRI CASTG 4 cut(s) 147, 253, 300, 358
XceI RCATGY 1 cut(s) 447
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 3 cut(s) 23, 29, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.