pycom02g12430

STS14 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012124
Physical Location & Seq
Reverse (-)
9026286 .. 9026722
437 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12430.1

Sequence Viewer

Length: 384 bp
ATGCGGCGACCAGAGAGTATCTGGAACCCCACAACCAAACAAGAGACGTGGTGGGTGTTATCAGGCCTCCCAATTGGAATGAGTCCATGGCAAAAGCTGCAACCCGGCCGGGTGGTGAGCCACCAAAGAGACAGCAAACACTGCGACCTGGCAGAAGACCCCCGCAGTTTGAGTGGCTCCGGCTCGAACTATAACTCCAACCAGTTTTGGTCGGTTGTGCGGTCGCGGCCAATGACACCTAGTTTGGCTGTGGAATCCTGGGTGTCCGAGAAGCAGTACTACAACTCATGCGTGCAGAATCATGGGCGTGGCCACTTGCAGACTAGTTTAACTCTTTTTTTTTATAATCCTCCAGGGAACTATGAAGGGCAAATCCCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

128

Amino Acids

14.61

Weight (kDa)

9.03

Isoelectric Point (pI)

55.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66590
fragaria_vesca FvH4_1g14370
malus_domestica MD02G1157200.v1.1 MD02G1157300.v1.1 MD15G1271900.v1.1
prunus_persica Prupe.7G146300_v2.0.a1
pyrus_communis pycom02g12430 pycom02g12440 pycom15g23580
rosa_chinensis RchiOBHm_Chr2g0103071
rosa_laevigata RLG00000017203
rosa_multiflora Rmu_co8460475.1_g000001 Rmu_sc0000388.1_g000013
rosa_rugosa Rorug02G0111900
rosa_samantha Rh2AG160000 Rh2BG166600 Rh2CG166800 Rh2DG165600
rosa_wichuraiana Rw2G012520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AccII CGCG 1 cut(s) 226
AciI CCGC 4 cut(s) 4, 163, 220, 226
AcoI YGGCCR 3 cut(s) 106, 227, 310
AfaI GTAC 1 cut(s) 278
AhlI ACTAGT 1 cut(s) 323
AjiI CACGTC 1 cut(s) 48
AjnI CCWGG 3 cut(s) 147, 257, 352
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw26I GTCTC 2 cut(s) 38, 123
AoxI GGCC 4 cut(s) 64, 106, 227, 310
ApeKI GCWGC 1 cut(s) 97
ArsI GACNNNNNNTTYG 2 cut(s) 226, 258
AsuC2I CCSGG 2 cut(s) 105, 110
AsuHPI GGTGA 1 cut(s) 127
BalI TGGCCA 1 cut(s) 312
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 84
BciT130I CCWGG 3 cut(s) 149, 259, 354
BcnI CCSGG 2 cut(s) 105, 110
BcoDI GTCTC 2 cut(s) 38, 123
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 2 cut(s) 240, 324
BisI GCNGC 3 cut(s) 5, 98, 227
BlsI GCNGC 3 cut(s) 6, 99, 228
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 5 cut(s) 105, 110, 149, 259, 354
BmgBI CACGTC 1 cut(s) 48
BmiI GGNNCC 2 cut(s) 26, 178
BmrFI CCNGG 5 cut(s) 105, 110, 149, 259, 354
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 336
BpuMI CCSGG 2 cut(s) 105, 110
BsaJI CCNNGG 3 cut(s) 86, 258, 353
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bse1I ACTGG 1 cut(s) 202
BseBI CCWGG 3 cut(s) 149, 259, 354
BseDI CCNNGG 3 cut(s) 86, 258, 353
BseNI ACTGG 1 cut(s) 202
BseX3I CGGCCG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 84
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 1 cut(s) 226
Bsh1285I CGRYCG 2 cut(s) 109, 224
BshFI GGCC 4 cut(s) 66, 108, 229, 312
BsiEI CGRYCG 2 cut(s) 109, 224
BsiSI CCGG 3 cut(s) 105, 109, 180
BsmAI GTCTC 2 cut(s) 38, 123
BsmBI CGTCTC 1 cut(s) 38
BsnI GGCC 4 cut(s) 66, 108, 229, 312
Bsp19I CCATGG 1 cut(s) 86
BspACI CCGC 4 cut(s) 4, 163, 220, 226
BspANI GGCC 4 cut(s) 66, 108, 229, 312
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 26, 178
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 3 cut(s) 86, 258, 353
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 3 cut(s) 149, 259, 354
BstAPI GCANNNNNTGC 2 cut(s) 97, 141
BstC8I GCNNGC 1 cut(s) 293
BstDSI CCRYGG 1 cut(s) 86
BstFNI CGCG 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 38, 123
BstMCI CGRYCG 2 cut(s) 109, 224
BstMWI GCNNNNNNNGC 3 cut(s) 97, 141, 226
BstNI CCWGG 3 cut(s) 149, 259, 354
BstSCI CCNGG 5 cut(s) 103, 108, 147, 257, 352
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 162
BstZI CGGCCG 1 cut(s) 106
BsuRI GGCC 4 cut(s) 66, 108, 229, 312
BtgI CCRYGG 1 cut(s) 86
BtrI CACGTC 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 277
CspCI CAANNNNNGTGG 2 cut(s) 29, 64
CviAII CATG 3 cut(s) 87, 288, 302
CviJI RGCY 9 cut(s) 66, 97, 108, 120, 177, 183, 229, 248, 312
CviKI_1 RGCY 9 cut(s) 66, 97, 108, 120, 177, 183, 229, 248, 312
CviQI GTAC 1 cut(s) 277
EaeI YGGCCR 3 cut(s) 106, 227, 310
EagI CGGCCG 1 cut(s) 106
EclXI CGGCCG 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 86
Eco147I AGGCCT 1 cut(s) 66
Eco52I CGGCCG 1 cut(s) 106
EcoRII CCWGG 3 cut(s) 147, 257, 352
EcoT14I CCWWGG 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 86
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 3 cut(s) 90, 291, 305
FaiI YATR 6 cut(s) 88, 192, 289, 303, 345, 363
FatI CATG 3 cut(s) 86, 287, 301
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 3 cut(s) 5, 98, 227
Fsp4HI GCNGC 3 cut(s) 5, 98, 227
FspBI CTAG 2 cut(s) 240, 324
GluI GCNGC 3 cut(s) 5, 98, 227
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 4 cut(s) 66, 108, 229, 312
HapII CCGG 3 cut(s) 105, 109, 180
Hin1II CATG 3 cut(s) 90, 291, 305
HinfI GANTC 3 cut(s) 82, 254, 298
HpaII CCGG 3 cut(s) 105, 109, 180
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 3 cut(s) 100, 295, 319
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 141, 226
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 3 cut(s) 90, 291, 305
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 1 cut(s) 84
MaeI CTAG 2 cut(s) 240, 324
MaeII ACGT 1 cut(s) 47
MboII GAAGA 1 cut(s) 167
MfeI CAATTG 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 1 cut(s) 72
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 2 cut(s) 77, 360
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MseI TTAA 1 cut(s) 329
MslI CAYNNNNRTG 1 cut(s) 306
Msp20I TGGCCA 1 cut(s) 312
MspI CCGG 3 cut(s) 105, 109, 180
MspR9I CCNGG 5 cut(s) 105, 110, 149, 259, 354
MunI CAATTG 1 cut(s) 72
MvaI CCWGG 3 cut(s) 149, 259, 354
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 3 cut(s) 97, 141, 226
NciI CCSGG 2 cut(s) 105, 110
NcoI CCATGG 1 cut(s) 86
NlaIII CATG 3 cut(s) 90, 291, 305
NlaIV GGNNCC 2 cut(s) 26, 178
PceI AGGCCT 1 cut(s) 66
PfeI GAWTC 2 cut(s) 254, 298
PkrI GCNGC 3 cut(s) 6, 99, 228
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PsiI TTATAA 1 cut(s) 345
Psp6I CCWGG 3 cut(s) 147, 257, 352
PspGI CCWGG 3 cut(s) 147, 257, 352
PspN4I GGNNCC 2 cut(s) 26, 178
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 3 cut(s) 5, 98, 227
ScaI AGTACT 1 cut(s) 278
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 5 cut(s) 105, 110, 149, 259, 354
SetI ASST 4 cut(s) 50, 99, 150, 241
SmiMI CAYNNNNRTG 1 cut(s) 306
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 1 cut(s) 72
SseBI AGGCCT 1 cut(s) 66
SsiI CCGC 4 cut(s) 4, 163, 220, 226
SspMI CTAG 2 cut(s) 240, 324
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 5 cut(s) 103, 108, 147, 257, 352
StyI CCWWGG 1 cut(s) 86
TaiI ACGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 185
TasI AATT 1 cut(s) 72
TatI WGTACW 1 cut(s) 276
TauI GCSGC 2 cut(s) 7, 229
TfiI GAWTC 2 cut(s) 254, 298
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TscAI CASTG 1 cut(s) 146
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 378
TspRI CASTG 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XspI CTAG 2 cut(s) 240, 324
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.