pycom02g12440

STS14 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012124
Physical Location & Seq
Reverse (-)
9027805 .. 9028281
477 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g12440.1

Sequence Viewer

Length: 477 bp
ATGCAGCTCAGCCCTGGCGCCGCTTCAGCTACCGCCATAGACTACGTCGAAGCCCACAACCGAGCAAGAGCGCCCGTCGGTGTCGGCCCTTTAAAGTGGAGCGAGTCCTTAGCAACAGCCGCTACCCGAGTGGTCATCCACCAAAGAGACAATAACCACTGCGACCTAGCAGCAGACCCTAACAGTTTGACTTACTCCGACACCAAGTATGGCTTCAACCAGTATTGGACAACTGTCAGGACGCGGACGGTGATGCCCCGCATGGCGGTGGAAAACTGGGTGGAGGAGAAGCAGTACTACGACCACGACAATAATTCGTGCGCACCAAATCATGAGTGTCGTTCGTACACGCAGGTTGTGTCGAGAAAGTCCTTGGAGTTGAGGTGTGCTGAAGCCACGTGTGTCAAGGAGCAGAAGAGTGTTACTGTTTGTTTTTGTAATCCTCCTGGAAACTTTGAAGGGGAGAGTACCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

159

Amino Acids

17.73

Weight (kDa)

6.19

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 16 - 144 1.6e-12 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012124)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66590
fragaria_vesca FvH4_1g14370
malus_domestica MD02G1157200.v1.1 MD02G1157300.v1.1 MD15G1271900.v1.1
prunus_persica Prupe.7G146300_v2.0.a1
pyrus_communis pycom02g12430 pycom02g12440 pycom15g23580
rosa_chinensis RchiOBHm_Chr2g0103071
rosa_laevigata RLG00000017203
rosa_multiflora Rmu_co8460475.1_g000001 Rmu_sc0000388.1_g000013
rosa_rugosa Rorug02G0111900
rosa_samantha Rh2AG160000 Rh2BG166600 Rh2CG166800 Rh2DG165600
rosa_wichuraiana Rw2G012520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 17
AccII CGCG 1 cut(s) 244
AciI CCGC 6 cut(s) 21, 33, 120, 244, 259, 266
AcuI CTGAAG 2 cut(s) 9, 411
AcvI CACGTG 1 cut(s) 399
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 3 cut(s) 296, 347, 469
AfiI CCNNNNNNNGG 1 cut(s) 265
AflIII ACRYGT 1 cut(s) 398
AgsI TTSAA 2 cut(s) 217, 458
AjnI CCWGG 2 cut(s) 13, 445
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 7, 29
AluI AGCT 2 cut(s) 7, 29
Alw26I GTCTC 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 4, 170
AspLEI GCGC 3 cut(s) 20, 73, 323
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 126
BanI GGYRCC 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
BbrPI CACGTG 1 cut(s) 399
BbvI GCAGC 2 cut(s) 16, 182
BciT130I CCWGG 2 cut(s) 15, 447
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 2 cut(s) 167, 475
BfoI RGCGCY 2 cut(s) 21, 74
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 4 cut(s) 5, 21, 120, 171
BlpI GCTNAGC 1 cut(s) 8
BlsI GCNGC 4 cut(s) 6, 22, 121, 172
BmcAI AGTACT 1 cut(s) 296
Bme1390I CCNGG 2 cut(s) 15, 447
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 15, 447
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 286
BoxI GACNNNNGTC 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 109
Bpu1102I GCTNAGC 1 cut(s) 8
BsaAI YACGTR 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 13, 372
BsaXI ACNNNNNCTCC 4 cut(s) 278, 308, 368, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 2 cut(s) 220, 281
BseBI CCWGG 2 cut(s) 15, 447
BseDI CCNNGG 2 cut(s) 13, 372
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 22
BseNI ACTGG 2 cut(s) 220, 281
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 16, 182
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 87
BshNI GGYRCC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 141
BsnI GGCC 1 cut(s) 87
BsoBI CYCGRG 1 cut(s) 126
Bsp1720I GCTNAGC 1 cut(s) 8
BspACI CCGC 6 cut(s) 21, 33, 120, 244, 259, 266
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 1 cut(s) 244
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 17
BsrI ACTGG 2 cut(s) 220, 281
BssECI CCNNGG 2 cut(s) 13, 372
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 2 cut(s) 15, 447
Bst4CI ACNGT 4 cut(s) 185, 235, 250, 427
Bst6I CTCTTC 1 cut(s) 410
BstACI GRCGYC 1 cut(s) 18
BstBAI YACGTR 1 cut(s) 399
BstDEI CTNAG 2 cut(s) 8, 109
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 244
BstH2I RGCGCY 2 cut(s) 21, 74
BstHHI GCGC 3 cut(s) 20, 73, 323
BstMAI GTCTC 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 26, 119
BstNI CCWGG 2 cut(s) 15, 447
BstPAI GACNNNNGTC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 13, 445
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 16, 182
BsuRI GGCC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
BveI ACCTGC 1 cut(s) 343
CciI TCATGA 1 cut(s) 331
CfoI GCGC 3 cut(s) 20, 73, 323
Cfr13I GGNCC 1 cut(s) 86
CseI GACGC 1 cut(s) 250
Csp6I GTAC 3 cut(s) 295, 346, 468
CviAII CATG 2 cut(s) 262, 332
CviJI RGCY 8 cut(s) 7, 12, 29, 53, 87, 119, 213, 395
CviKI_1 RGCY 8 cut(s) 7, 12, 29, 53, 87, 119, 213, 395
CviQI GTAC 3 cut(s) 295, 346, 468
DdeI CTNAG 2 cut(s) 8, 109
DinI GGCGCC 1 cut(s) 19
DraI TTTAAA 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 372
Eco57I CTGAAG 2 cut(s) 9, 411
Eco72I CACGTG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 126
EcoRII CCWGG 2 cut(s) 13, 445
EcoT14I CCWWGG 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 2 cut(s) 265, 335
FaiI YATR 4 cut(s) 38, 210, 263, 333
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FatI CATG 2 cut(s) 261, 331
FauI CCCGC 1 cut(s) 266
Fnu4HI GCNGC 4 cut(s) 5, 21, 120, 171
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 4 cut(s) 5, 21, 120, 171
FspAI RTGCGCAY 1 cut(s) 322
FspBI CTAG 2 cut(s) 167, 475
FspI TGCGCA 1 cut(s) 322
GlaI GCGC 3 cut(s) 19, 72, 322
GluI GCNGC 4 cut(s) 5, 21, 120, 171
HaeII RGCGCY 2 cut(s) 21, 74
HaeIII GGCC 1 cut(s) 87
HgaI GACGC 1 cut(s) 250
HhaI GCGC 3 cut(s) 20, 73, 323
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 2 cut(s) 265, 335
Hin6I GCGC 3 cut(s) 18, 71, 321
HinP1I GCGC 3 cut(s) 18, 71, 321
HinfI GANTC 1 cut(s) 104
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 3 cut(s) 238, 332, 363
Hpy8I GTNNAC 1 cut(s) 348
Hpy99I CGWCG 2 cut(s) 50, 80
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 4 cut(s) 185, 235, 250, 427
HpyCH4IV ACGT 2 cut(s) 45, 398
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 119
HpyF3I CTNAG 2 cut(s) 8, 109
HpySE526I ACGT 2 cut(s) 45, 398
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 2 cut(s) 265, 335
HspAI GCGC 3 cut(s) 18, 71, 321
KasI GGCGCC 1 cut(s) 17
LmnI GCTCC 2 cut(s) 99, 409
LpnPI CCDG 7 cut(s) 27, 223, 233, 262, 338, 432, 459
Lsp1109I GCAGC 2 cut(s) 16, 182
LweI GCATC 1 cut(s) 243
MaeI CTAG 2 cut(s) 167, 475
MaeII ACGT 2 cut(s) 45, 398
MaeIII GTNAC 1 cut(s) 421
MboII GAAGA 1 cut(s) 427
MluCI AATT 1 cut(s) 313
Mly113I GGCGCC 1 cut(s) 18
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 3 cut(s) 277, 375, 453
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 266
MspR9I CCNGG 2 cut(s) 15, 447
MvaI CCWGG 2 cut(s) 15, 447
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 26, 119
NarI GGCGCC 1 cut(s) 18
NlaIII CATG 2 cut(s) 265, 335
NlaIV GGNNCC 1 cut(s) 19
NsbI TGCGCA 1 cut(s) 322
PagI TCATGA 1 cut(s) 331
PflFI GACNNNGTC 1 cut(s) 44
PfoI TCCNGGA 1 cut(s) 445
PkrI GCNGC 4 cut(s) 6, 22, 121, 172
PleI GAGTC 1 cut(s) 112
PluTI GGCGCC 1 cut(s) 21
PmaCI CACGTG 1 cut(s) 399
PmlI CACGTG 1 cut(s) 399
PpsI GAGTC 1 cut(s) 112
Ppu21I YACGTR 1 cut(s) 399
PshAI GACNNNNGTC 1 cut(s) 233
Psp6I CCWGG 2 cut(s) 13, 445
PspCI CACGTG 1 cut(s) 399
PspGI CCWGG 2 cut(s) 13, 445
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 86
PsyI GACNNNGTC 1 cut(s) 44
RsaI GTAC 3 cut(s) 296, 347, 469
RsaNI GTAC 3 cut(s) 295, 346, 468
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 4 cut(s) 5, 21, 120, 171
Sau96I GGNCC 1 cut(s) 86
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 15, 447
SetI ASST 8 cut(s) 9, 31, 48, 168, 357, 386, 401, 473
SfaNI GCATC 1 cut(s) 243
SfoI GGCGCC 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 1 cut(s) 313
SsiI CCGC 6 cut(s) 21, 33, 120, 244, 259, 266
SspDI GGCGCC 1 cut(s) 17
SspMI CTAG 2 cut(s) 167, 475
StyD4I CCNGG 2 cut(s) 13, 445
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 4 cut(s) 185, 235, 250, 427
TaiI ACGT 2 cut(s) 48, 401
TaqI TCGA 2 cut(s) 48, 362
TasI AATT 1 cut(s) 313
TatI WGTACW 1 cut(s) 294
TauI GCSGC 2 cut(s) 23, 122
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 1 cut(s) 164
TseI GCWGC 2 cut(s) 4, 170
TspRI CASTG 1 cut(s) 164
Tth111I GACNNNGTC 1 cut(s) 44
XspI CTAG 2 cut(s) 167, 475
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.