Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014639

Physical Location & Seq

Genomic Coordinates Reverse (-)

8228839 .. 8230112

Gene Structure 1274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g14710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCTATTCATCGCCGGAGAATTCAACAAGGCTCTGTTGTTCCGGTCACCGCTCCAAGCTTCATTGCGATAGTCTCAGCTCAAGCACTTGAAGATGGAAAACTTGAAATTCCAAGAGCTGTTGTGAGGCAATCTGGAGATCTTCTGGCAGAGATGATACTTCTCAAGGTTCCTAAAGGAGCCAACTGGGTAATAGAGTTGACAAAGAGTAATGGCAAGATTTGGCTGCAAAAGGGTTGGCCCGAATTCGCAAGACATTACTCGTTGGAGCATGGTAGCTTACTCCTCTTCAGCTTCCAAGGGGACTACTCGTGTTTGAGGGTACAGATCTTCAAGAGGAACACTATGGAGATAAACTATCCACCTTTGGAGATGAATTATCCACCAAATTCAAGTATCACCGTGGAGATGAATCATGCATCAAGCCATGATGATGGTCCTGATCCTTTTTCTGACAATGATGGTCCTGATGCTGATGATGAGAATGGCGACAACGATGATGCTGATGATGGTGGTGCTCATGATGGGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

178

Amino Acids

19.57

Weight (kDa)

4.74

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	25 - 114	5.3e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14710
malus_domestica	MD02G1160400.v1.1
prunus_persica	Prupe.7G143300_v2.0.a1 Prupe.7G143400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103571
rosa_laevigata	RLG00000017245
rosa_multiflora	Rmu_sc0001530.1_g000007 Rmu_sc0001852.1_g000022
rosa_roxburghii	Rroxscaffold_2G00139520
rosa_rugosa	Rorug02G0115800
rosa_samantha	Rh2AG164100 Rh2AG164900 Rh2BG171300 Rh2BG172000 Rh2CG170800 Rh2DG169400 Rh2DG170400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	53
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	437
AcsI	RAATTY	4 cut(s)	21, 108, 245, 388
AcuI	CTGAAG	1 cut(s)	274
AfaI	GTAC	1 cut(s)	324
AgsI	TTSAA	5 cut(s)	26, 92, 107, 334, 393
AluBI	AGCT	5 cut(s)	60, 80, 119, 279, 294
AluI	AGCT	5 cut(s)	60, 80, 119, 279, 294
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	437
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	226
ApoI	RAATTY	4 cut(s)	21, 108, 245, 388
AspS9I	GGNCC	3 cut(s)	240, 437, 464
AsuHPI	GGTGA	2 cut(s)	40, 391
AvaII	GGWCC	2 cut(s)	437, 464
BauI	CACGAG	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	5 cut(s)	89, 428, 455, 503, 518
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	532
BglII	AGATCT	2 cut(s)	139, 327
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme18I	GGWCC	2 cut(s)	437, 464
BmgT120I	GGNCC	3 cut(s)	240, 437, 464
BmiI	GGNNCC	2 cut(s)	171, 181
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	3 cut(s)	428, 460, 490
BmuI	ACTGGG	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	66, 149
BsaJI	CCNNGG	2 cut(s)	298, 402
BsaWI	WCCGGW	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	298, 402
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	2 cut(s)	16, 44
BslFI	GGGAC	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	4 cut(s)	139, 327, 442, 528
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	89
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	2 cut(s)	171, 181
BspPI	GGATC	1 cut(s)	437
BsrBI	CCGCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	298, 402
BssMI	GATC	4 cut(s)	139, 327, 442, 528
BssSI	CACGAG	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	298
Bst2BI	CACGAG	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	293
BstDEI	CTNAG	1 cut(s)	76
BstDSI	CCRYGG	1 cut(s)	402
BstEII	GGTNACC	1 cut(s)	46
BstKTI	GATC	4 cut(s)	142, 330, 445, 531
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	4 cut(s)	139, 327, 442, 528
BstPI	GGTNACC	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	213
BstX2I	RGATCY	3 cut(s)	139, 327, 528
BstXI	CCANNNNNNTGG	1 cut(s)	434
BstYI	RGATCY	3 cut(s)	139, 327, 528
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	402
CciI	TCATGA	1 cut(s)	520
Cfr13I	GGNCC	3 cut(s)	240, 437, 464
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	4 cut(s)	272, 416, 428, 521
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	4 cut(s)	141, 329, 444, 530
DpnII	GATC	4 cut(s)	139, 327, 442, 528
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	437, 464
Eco57I	CTGAAG	1 cut(s)	274
Eco91I	GGTNACC	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	46
EcoRI	GAATTC	2 cut(s)	21, 245
EcoT14I	CCWWGG	1 cut(s)	298
EcoT22I	ATGCAT	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	4 cut(s)	275, 419, 431, 524
FaiI	YATR	5 cut(s)	273, 347, 417, 429, 522
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	4 cut(s)	271, 415, 427, 520
Fnu4HI	GCNGC	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	1 cut(s)	532
GluI	GCNGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	2 cut(s)	16, 44
Hin1II	CATG	4 cut(s)	275, 419, 431, 524
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	1 cut(s)	412
HpaII	CCGG	2 cut(s)	16, 44
HphI	GGTGA	2 cut(s)	40, 391
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	5 cut(s)	135, 334, 440, 467, 521
Hpy8I	GTNNAC	1 cut(s)	201
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	2 cut(s)	229, 419
HpyF3I	CTNAG	1 cut(s)	76
Hsp92II	CATG	4 cut(s)	275, 419, 431, 524
Kzo9I	GATC	4 cut(s)	139, 327, 442, 528
LmnI	GCTCC	3 cut(s)	58, 179, 268
LpnPI	CCDG	7 cut(s)	29, 57, 120, 131, 172, 453, 480
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	3 cut(s)	428, 460, 490
MaeI	CTAG	1 cut(s)	532
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	4 cut(s)	141, 329, 444, 530
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	4 cut(s)	139, 327, 442, 528
MboII	GAAGA	4 cut(s)	104, 134, 280, 322
MflI	RGATCY	3 cut(s)	139, 327, 528
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	5 cut(s)	21, 108, 245, 376, 388
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	4 cut(s)	120, 296, 312, 330
Mph1103I	ATGCAT	1 cut(s)	421
MslI	CAYNNNNRTG	1 cut(s)	432
MspI	CCGG	2 cut(s)	16, 44
NdeII	GATC	4 cut(s)	139, 327, 442, 528
NlaIII	CATG	4 cut(s)	275, 419, 431, 524
NlaIV	GGNNCC	2 cut(s)	171, 181
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	421
PagI	TCATGA	1 cut(s)	520
PfeI	GAWTC	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	228
PspEI	GGTNACC	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	171, 181
PspPI	GGNCC	3 cut(s)	240, 437, 464
PsuI	RGATCY	3 cut(s)	139, 327, 528
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	1 cut(s)	432
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	4 cut(s)	139, 327, 442, 528
Sau96I	GGNCC	3 cut(s)	240, 437, 464
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	7 cut(s)	62, 82, 121, 171, 281, 296, 367
SfaNI	GCATC	3 cut(s)	428, 460, 490
SinI	GGWCC	2 cut(s)	437, 464
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	2 cut(s)	81, 164
SmoI	CTYRAG	2 cut(s)	81, 164
Sse9I	AATT	5 cut(s)	21, 108, 245, 376, 388
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	532
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	403
TasI	AATT	5 cut(s)	21, 108, 245, 376, 388
TfiI	GAWTC	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	52, 389, 425
VpaK11BI	GGWCC	2 cut(s)	437, 464
XapI	RAATTY	4 cut(s)	21, 108, 245, 388
XspI	CTAG	1 cut(s)	532
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.