Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014639

Physical Location & Seq

Genomic Coordinates Forward (+)

77885885 .. 77888671

Gene Structure 2787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTTCTCATGGCCGGAGGAATCGTAAAGGCTCTATCTTTCCAGTCACCATTCCAAGCTTCTTCGTGATAGTCTTGGCTCAAGCACTTGAAGATGGAAAACTTGAAATTCCAAGAACTGTTGTGAGGCAATGTGGAGATCGTCTGGCACAGATAATACTTATCAAGGTTTCTAAAGGAGCAGGCTGGGGAATCGAGTTGACAAAGAGTAACAGAAAGATTTGGCTGCAAAAGGGTTGGCCTGGATTCGCGAAGCATTACTCGCTGGAGCATGGTAGCTTACTCCTCTTCAGCTCCCAAGGGGATTACTTGCATTTCGGGGTACAGATTTTCAAGAGGAACACTTTGGAGATAAACTATCCACCTTTGGAGATGAATTATCCACCGCATTCAAGTAGCACTGTGGAGATGAATCCTGCATCCAATTCAAGCCATGATGATAGTGCTGATGCTTATGCTGACAATGATGACAATGATGCTGATGGTGAGTATGACGACAACGATGATGCTGATGATGGTGGTGCTAATGATGGGGATGCAAGATCTAATGAAGATGTAACTATGTTAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

190

Amino Acids

21.02

Weight (kDa)

4.79

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	23 - 113	4.8e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14710
malus_domestica	MD02G1160400.v1.1
prunus_persica	Prupe.7G143300_v2.0.a1 Prupe.7G143400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103571
rosa_laevigata	RLG00000017245
rosa_multiflora	Rmu_sc0001530.1_g000007 Rmu_sc0001852.1_g000022
rosa_roxburghii	Rroxscaffold_2G00139520
rosa_rugosa	Rorug02G0115800
rosa_samantha	Rh2AG164100 Rh2AG164900 Rh2BG171300 Rh2BG172000 Rh2CG170800 Rh2DG169400 Rh2DG170400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	251
AciI	CCGC	1 cut(s)	386
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	274
AfaI	GTAC	1 cut(s)	324
AgsI	TTSAA	5 cut(s)	92, 107, 334, 393, 429
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	3 cut(s)	60, 279, 294
AluI	AGCT	3 cut(s)	60, 279, 294
AoxI	GGCC	2 cut(s)	13, 239
ApeKI	GCWGC	1 cut(s)	226
ApoI	RAATTY	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	40, 497
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	4 cut(s)	89, 476, 509, 524
BciT130I	CCWGG	1 cut(s)	243
BglII	AGATCT	1 cut(s)	542
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	5 cut(s)	428, 439, 466, 496, 526
BpmI	CTGGAG	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	419, 541
BseMI	GCAATG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	213
BseYI	CCCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	2 cut(s)	15, 241
BsiSI	CCGG	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	15, 241
Bsp143I	GATC	2 cut(s)	139, 542
Bsp68I	TCGCGA	1 cut(s)	251
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	2 cut(s)	15, 241
BspFNI	CGCG	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	2 cut(s)	139, 542
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	121, 403
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	419, 541
BstFNI	CGCG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	142, 545
BstMBI	GATC	2 cut(s)	139, 542
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BsuRI	GGCC	2 cut(s)	15, 241
BtsCI	GGATG	2 cut(s)	419, 541
BtsIMutI	CAGTG	1 cut(s)	399
BtuMI	TCGCGA	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	3 cut(s)	11, 272, 434
CviQI	GTAC	1 cut(s)	323
DpnI	GATC	2 cut(s)	141, 544
DpnII	GATC	2 cut(s)	139, 542
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	3 cut(s)	14, 275, 437
FaiI	YATR	6 cut(s)	12, 273, 435, 456, 492, 563
FatI	CATG	3 cut(s)	10, 271, 433
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	2 cut(s)	406, 548
Fsp4HI	GCNGC	1 cut(s)	227
GluI	GCNGC	1 cut(s)	227
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	2 cut(s)	15, 241
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	3 cut(s)	14, 275, 437
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	4 cut(s)	22, 192, 246, 412
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	2 cut(s)	40, 497
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188III	TCNNGA	3 cut(s)	67, 250, 334
Hpy8I	GTNNAC	1 cut(s)	201
HpyCH4III	ACNGT	2 cut(s)	121, 403
HpyCH4V	TGCA	4 cut(s)	229, 313, 419, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
Hsp92II	CATG	3 cut(s)	14, 275, 437
Kzo9I	GATC	2 cut(s)	139, 542
LmnI	GCTCC	3 cut(s)	179, 268, 299
LpnPI	CCDG	9 cut(s)	29, 57, 131, 168, 172, 228, 251, 255, 429
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	5 cut(s)	428, 439, 466, 496, 526
MaeIII	GTNAC	3 cut(s)	46, 209, 556
MalI	GATC	2 cut(s)	141, 544
MboI	GATC	2 cut(s)	139, 542
MboII	GAAGA	4 cut(s)	55, 104, 280, 563
MflI	RGATCY	1 cut(s)	542
MluCI	AATT	3 cut(s)	108, 376, 424
MnlI	CCTC	4 cut(s)	12, 120, 296, 330
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	243
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	2 cut(s)	139, 542
NlaIII	CATG	3 cut(s)	14, 275, 437
NmuCI	GTSAC	1 cut(s)	46
NruI	TCGCGA	1 cut(s)	251
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	4 cut(s)	22, 192, 246, 412
PkrI	GCNGC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	542
RruI	TCGCGA	1 cut(s)	251
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	2 cut(s)	139, 542
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	5 cut(s)	62, 171, 281, 296, 367
SfaNI	GCATC	5 cut(s)	428, 439, 466, 496, 526
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	3 cut(s)	108, 376, 424
SsiI	CCGC	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	121, 403
TaqI	TCGA	1 cut(s)	195
TasI	AATT	3 cut(s)	108, 376, 424
TfiI	GAWTC	4 cut(s)	22, 192, 246, 412
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	389, 425, 564
TspRI	CASTG	1 cut(s)	406
XapI	RAATTY	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.