Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014639

Physical Location & Seq

Genomic Coordinates Reverse (-)

14857440 .. 14859451

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG170400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCTTCTCATGGCCGGAGGAATCGTGAAGGCTCTATCTTTCCAGTCACCATTCCAAGCTTCTTTGTGATAGTCTTGGCTCAAGCACTTGAAGATGGAAAACTTGAAATTCCAAGAACTGTTGTGAGGCAATGTGGAGATCGTCTGGCACAGATAATACTTATCAAGGTTTCTAAAGGAGCAGGCTGGGGAATCGAGTTGGCAAAGAGTAACAGAAACATTTGGCTGCAAAAGGGTTGGCCTGGATTCGCAAAGCATTACTCGCTGGAGCATGGCTCAAATTTGACGACCAAAGCAGAACAAAACAAATACAAGTCATTGGAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

109

Amino Acids

12.19

Weight (kDa)

9.93

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	23 - 102	4.7e-09	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14710
malus_domestica	MD02G1160400.v1.1
prunus_persica	Prupe.7G143300_v2.0.a1 Prupe.7G143400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103571
rosa_laevigata	RLG00000017245
rosa_multiflora	Rmu_sc0001530.1_g000007 Rmu_sc0001852.1_g000022
rosa_roxburghii	Rroxscaffold_2G00139520
rosa_rugosa	Rorug02G0115800
rosa_samantha	Rh2AG164100 Rh2AG164900 Rh2BG171300 Rh2BG172000 Rh2CG170800 Rh2DG169400 Rh2DG170400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	108, 280
AgsI	TTSAA	2 cut(s)	92, 107
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
AoxI	GGCC	2 cut(s)	13, 239
ApeKI	GCWGC	1 cut(s)	226
ApoI	RAATTY	2 cut(s)	108, 280
AsuHPI	GGTGA	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	243
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	243
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	213
BseYI	CCCAGC	1 cut(s)	186
BshFI	GGCC	2 cut(s)	15, 241
BsiSI	CCGG	1 cut(s)	16
BsnI	GGCC	2 cut(s)	15, 241
Bsp143I	GATC	1 cut(s)	139
BspANI	GGCC	2 cut(s)	15, 241
BsrDI	GCAATG	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	44
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	327
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	15, 241
Cac8I	GCNNGC	1 cut(s)	184
CviAII	CATG	2 cut(s)	11, 272
CviJI	RGCY	9 cut(s)	5, 15, 33, 60, 80, 186, 226, 241, 276
CviKI_1	RGCY	9 cut(s)	5, 15, 33, 60, 80, 186, 226, 241, 276
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	14, 275
FaiI	YATR	2 cut(s)	12, 273
FatI	CATG	2 cut(s)	10, 271
Fnu4HI	GCNGC	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	227
GluI	GCNGC	1 cut(s)	227
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	2 cut(s)	15, 241
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	2 cut(s)	14, 275
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	4 cut(s)	22, 192, 246, 323
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	14, 275
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	179, 268
LpnPI	CCDG	8 cut(s)	29, 57, 131, 168, 172, 228, 251, 255
Lsp1109I	GCAGC	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	46, 209
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	1 cut(s)	104
MluCI	AATT	2 cut(s)	108, 280
MnlI	CCTC	2 cut(s)	12, 120
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	14, 275
NmuCI	GTSAC	1 cut(s)	46
PfeI	GAWTC	4 cut(s)	22, 192, 246, 323
PkrI	GCNGC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	241
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	2 cut(s)	62, 171
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	2 cut(s)	108, 280
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	108, 280
TfiI	GAWTC	4 cut(s)	22, 192, 246, 323
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	46
XapI	RAATTY	2 cut(s)	108, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.