Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0014639

Physical Location & Seq

Genomic Coordinates Forward (+)

15775384 .. 15777917

Gene Structure 2534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G143300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGTTCATCTAGTCGACATGGCAAAGGCCTTGCCTTTCCTGTGGACTCTCGGAGCTTCTTCAAGATAGTCTTGTCAAAGGATGTTCTTAAATTTCCAGAGAGTGTTGTGACGAAGTATGGAGATTGTCTAGGAGACACAGTCTTTCTCAAGGTTCCGAATAGCGAGGTATGGCCTATAGAACTGACAAAGCGTAATGGCCAGGTTTGGTTACAACAGGGCTGGTCAAACTTCGCAGATTTTTACTCACTAGCCTTTGGCTACGTATTGCTCTTCAGCTATGAAGGGAATCATTCTCATTTCCAAGTAAGGATTTTCATGAGGTCTCCTTTAGAGACAGATTATTTCGGTTCAAGTGTTAAAGAAGAAGACAACTTAAATGGTGAGATGGATTATTCAAACTCACCCGAGTCCCCTGCCTCTCTGATGAATGCTCCAAGCTTCTTTAAGATTGTCTTGGGAAGGACACTTCAAGATGGGAAGCTCGAAATTCCAATTATTGCTGTGCATACGTATAGAGATTATATGGCAGACACAGCGTACTTTGAAGTTCCAGATGGATCAATTTGGCCCATTGAATGGACTAGGCGTGATCGCGAGATTTGGTTAGGAAGGGGCTGGCCAGAATTCGCAAAGTCTTACTCCCTAGAAGATGGATGCTTCTTGGTGTTCAGCTATGCAGGGAAATGTTCCCATTTCCAGCTTCGCATTTTTAGAAAGAATACTTTAGAGATGGAGTATAACAGTTCAAGTGACGATACTGAAGGCAATTCTAACACAAGTCGTGATCAAACTGAAGGAGAAAAGAGGACGCGTGGTGGTGATGGAGGAAAGACTGCTTCACACAAATCATCAGGGGTTGATTTGAGAACTGTTAAACTTGAAAGTTTGAAAGGTAGAGCCTTTGCCAAAGCTAGCAGTTTCAAATACGACAATCCATTTACTGTGATCAGTATGCAACCATCATATGTTCTAAATCACTTGAGCATCTCGCCATCCTTTTGTCATGAAACATATCCTTTCAGATGGCGAATGCAATGTGACCCTACAGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

353

Amino Acids

40.17

Weight (kDa)

6.1

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14710
malus_domestica	MD02G1160400.v1.1
prunus_persica	Prupe.7G143300_v2.0.a1 Prupe.7G143400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103571
rosa_laevigata	RLG00000017245
rosa_multiflora	Rmu_sc0001530.1_g000007 Rmu_sc0001852.1_g000022
rosa_roxburghii	Rroxscaffold_2G00139520
rosa_rugosa	Rorug02G0115800
rosa_samantha	Rh2AG164100 Rh2AG164900 Rh2BG171300 Rh2BG172000 Rh2CG170800 Rh2DG169400 Rh2DG170400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	579
AccI	GTMKAC	1 cut(s)	16
AccII	CGCG	2 cut(s)	597, 814
AclWI	GGATC	1 cut(s)	568
AcoI	YGGCCR	2 cut(s)	199, 620
AcsI	RAATTY	3 cut(s)	92, 489, 626
AcuI	CTGAAG	3 cut(s)	259, 783, 816
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	1 cut(s)	579
AflIII	ACRYGT	1 cut(s)	812
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	7 cut(s)	57, 279, 441, 484, 675, 703, 914
AluI	AGCT	7 cut(s)	57, 279, 441, 484, 675, 703, 914
Alw26I	GTCTC	3 cut(s)	129, 329, 330
AlwI	GGATC	1 cut(s)	568
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	5 cut(s)	28, 173, 199, 569, 620
ApoI	RAATTY	3 cut(s)	92, 489, 626
AspS9I	GGNCC	1 cut(s)	570
AsuHPI	GGTGA	3 cut(s)	395, 396, 833
AsuNHI	GCTAGC	1 cut(s)	914
AvaI	CYCGRG	1 cut(s)	407
BalI	TGGCCA	2 cut(s)	201, 622
BbsI	GAAGAC	1 cut(s)	375
BccI	CCATC	9 cut(s)	382, 470, 551, 647, 727, 818, 970, 1003, 1020
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	1 cut(s)	203
BclI	TGATCA	2 cut(s)	787, 948
BcoDI	GTCTC	3 cut(s)	129, 329, 330
BfaI	CTAG	6 cut(s)	12, 131, 251, 585, 647, 915
BfmI	CTRYAG	2 cut(s)	177, 1047
Bme1390I	CCNGG	1 cut(s)	203
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	570
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	647, 996
BmtI	GCTAGC	1 cut(s)	918
BpiI	GAAGAC	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	134, 1003
BsaAI	YACGTR	2 cut(s)	265, 513
BsaI	GGTCTC	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	1 cut(s)	579
Bse3DI	GCAATG	1 cut(s)	1043
BseBI	CCWGG	1 cut(s)	203
BseGI	GGATG	3 cut(s)	88, 662, 995
BseLI	CCNNNNNNNGG	1 cut(s)	579
BseMI	GCAATG	1 cut(s)	1043
Bsh1236I	CGCG	2 cut(s)	597, 814
BshFI	GGCC	5 cut(s)	30, 175, 201, 571, 622
BsiHKCI	CYCGRG	1 cut(s)	407
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	579
BsmAI	GTCTC	3 cut(s)	129, 329, 330
BsmFI	GGGAC	1 cut(s)	397
BsmI	GAATGC	2 cut(s)	436, 1038
BsnI	GGCC	5 cut(s)	30, 175, 201, 571, 622
Bso31I	GGTCTC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	407
Bsp143I	GATC	4 cut(s)	560, 592, 787, 948
Bsp68I	TCGCGA	1 cut(s)	597
BspANI	GGCC	5 cut(s)	30, 175, 201, 571, 622
BspFNI	CGCG	2 cut(s)	597, 814
BspHI	TCATGA	2 cut(s)	318, 1006
BspLI	GGNNCC	1 cut(s)	156
BspOI	GCTAGC	1 cut(s)	918
BspPI	GGATC	1 cut(s)	568
BspQI	GCTCTTC	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	1043
BssMI	GATC	4 cut(s)	560, 592, 787, 948
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	4 cut(s)	142, 746, 874, 946
Bst6I	CTCTTC	1 cut(s)	278
BstBAI	YACGTR	2 cut(s)	265, 513
BstC8I	GCNNGC	2 cut(s)	620, 916
BstF5I	GGATG	3 cut(s)	88, 662, 995
BstFNI	CGCG	2 cut(s)	597, 814
BstKTI	GATC	4 cut(s)	563, 595, 790, 951
BstMAI	GTCTC	3 cut(s)	129, 329, 330
BstMBI	GATC	4 cut(s)	560, 592, 787, 948
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	2 cut(s)	177, 1047
BstSNI	TACGTA	2 cut(s)	265, 513
BstUI	CGCG	2 cut(s)	597, 814
BstV2I	GAAGAC	1 cut(s)	375
BsuRI	GGCC	5 cut(s)	30, 175, 201, 571, 622
BtsCI	GGATG	3 cut(s)	88, 662, 995
BtuMI	TCGCGA	1 cut(s)	597
Cac8I	GCNNGC	2 cut(s)	620, 916
CciI	TCATGA	2 cut(s)	318, 1006
Cfr13I	GGNCC	1 cut(s)	570
CseI	GACGC	1 cut(s)	820
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	3 cut(s)	20, 319, 1007
CviQI	GTAC	1 cut(s)	541
DpnI	GATC	4 cut(s)	562, 594, 789, 950
DpnII	GATC	4 cut(s)	560, 592, 787, 948
EaeI	YGGCCR	2 cut(s)	199, 620
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco105I	TACGTA	2 cut(s)	265, 513
Eco147I	AGGCCT	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	330
Eco57I	CTGAAG	3 cut(s)	259, 783, 816
Eco88I	CYCGRG	1 cut(s)	407
EcoRI	GAATTC	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	201
FaeI	CATG	3 cut(s)	23, 322, 1010
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 440, 472
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	3 cut(s)	19, 318, 1006
FauNDI	CATATG	1 cut(s)	967
FbaI	TGATCA	2 cut(s)	787, 948
FblI	GTMKAC	1 cut(s)	16
FokI	GGATG	3 cut(s)	95, 669, 982
FspBI	CTAG	6 cut(s)	12, 131, 251, 585, 647, 915
HaeIII	GGCC	5 cut(s)	30, 175, 201, 571, 622
HgaI	GACGC	1 cut(s)	820
Hin1II	CATG	3 cut(s)	23, 322, 1010
HincII	GTYRAC	1 cut(s)	17
HindII	GTYRAC	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	3 cut(s)	47, 289, 410
HphI	GGTGA	3 cut(s)	395, 396, 833
Hpy166II	GTNNAC	2 cut(s)	17, 46
Hpy188I	TCNGA	5 cut(s)	54, 159, 426, 1025, 1058
Hpy188III	TCNNGA	8 cut(s)	64, 98, 319, 473, 554, 596, 785, 1007
Hpy8I	GTNNAC	2 cut(s)	17, 46
HpyAV	CCTTC	5 cut(s)	278, 456, 606, 758, 791
HpyCH4III	ACNGT	4 cut(s)	142, 746, 874, 946
HpyCH4IV	ACGT	2 cut(s)	264, 512
HpyCH4V	TGCA	4 cut(s)	508, 680, 958, 1036
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpySE526I	ACGT	2 cut(s)	264, 512
Hsp92II	CATG	3 cut(s)	23, 322, 1010
Ksp22I	TGATCA	2 cut(s)	787, 948
Kzo9I	GATC	4 cut(s)	560, 592, 787, 948
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	2 cut(s)	54, 439
LweI	GCATC	2 cut(s)	647, 996
MaeI	CTAG	6 cut(s)	12, 131, 251, 585, 647, 915
MaeII	ACGT	2 cut(s)	264, 512
MaeIII	GTNAC	4 cut(s)	109, 210, 752, 1040
MalI	GATC	4 cut(s)	562, 594, 789, 950
MboI	GATC	4 cut(s)	560, 592, 787, 948
MboII	GAAGA	5 cut(s)	52, 265, 377, 380, 662
MlsI	TGGCCA	2 cut(s)	201, 622
MluCI	AATT	6 cut(s)	92, 489, 495, 564, 626, 769
MluI	ACGCGT	1 cut(s)	812
MluNI	TGGCCA	2 cut(s)	201, 622
MlyI	GAGTC	2 cut(s)	41, 419
MnlI	CCTC	5 cut(s)	160, 315, 430, 801, 821
Mox20I	TGGCCA	2 cut(s)	201, 622
MscI	TGGCCA	2 cut(s)	201, 622
MseI	TTAA	5 cut(s)	90, 360, 377, 447, 876
Msp20I	TGGCCA	2 cut(s)	201, 622
MspR9I	CCNGG	1 cut(s)	203
Mva1269I	GAATGC	2 cut(s)	436, 1038
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	2 cut(s)	597, 814
MwoI	GCNNNNNNNGC	1 cut(s)	536
NdeI	CATATG	1 cut(s)	967
NdeII	GATC	4 cut(s)	560, 592, 787, 948
NheI	GCTAGC	1 cut(s)	914
NlaIII	CATG	3 cut(s)	23, 322, 1010
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	3 cut(s)	109, 752, 1040
NruI	TCGCGA	1 cut(s)	597
PagI	TCATGA	2 cut(s)	318, 1006
PceI	AGGCCT	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	278
PctI	GAATGC	2 cut(s)	436, 1038
PfeI	GAWTC	1 cut(s)	289
PflFI	GACNNNGTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	579
PleI	GAGTC	2 cut(s)	41, 418
PpsI	GAGTC	2 cut(s)	41, 418
Ppu21I	YACGTR	2 cut(s)	265, 513
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	570
PsyI	GACNNNGTC	1 cut(s)	140
RruI	TCGCGA	1 cut(s)	597
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
SalI	GTCGAC	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	5 cut(s)	90, 360, 377, 447, 876
Sau3AI	GATC	4 cut(s)	560, 592, 787, 948
Sau96I	GGNCC	1 cut(s)	570
SchI	GAGTC	2 cut(s)	41, 419
ScrFI	CCNGG	1 cut(s)	203
SfaNI	GCATC	2 cut(s)	647, 996
SfcI	CTRYAG	2 cut(s)	177, 1047
SmlI	CTYRAG	2 cut(s)	149, 982
SmoI	CTYRAG	2 cut(s)	149, 982
SnaBI	TACGTA	2 cut(s)	265, 513
Sse9I	AATT	6 cut(s)	92, 489, 495, 564, 626, 769
SseBI	AGGCCT	1 cut(s)	30
SspMI	CTAG	6 cut(s)	12, 131, 251, 585, 647, 915
StuI	AGGCCT	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	4 cut(s)	142, 746, 874, 946
TaiI	ACGT	2 cut(s)	267, 515
TaqI	TCGA	2 cut(s)	16, 486
TasI	AATT	6 cut(s)	92, 489, 495, 564, 626, 769
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	5 cut(s)	90, 360, 377, 447, 876
Tru9I	TTAA	5 cut(s)	90, 360, 377, 447, 876
TseFI	GTSAC	3 cut(s)	109, 752, 1040
Tsp45I	GTSAC	3 cut(s)	109, 752, 1040
TspDTI	ATGAA	4 cut(s)	297, 307, 443, 1023
Tth111I	GACNNNGTC	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	579
XapI	RAATTY	3 cut(s)	92, 489, 626
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	6 cut(s)	12, 131, 251, 585, 647, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.