Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014639

Physical Location & Seq

Genomic Coordinates Reverse (-)

13466911 .. 13468911

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1160400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAGCAGTCCAAATCATAATGTCCCTTCGTTAATTTATGTCACATGTAGTCTTGATATTGTAGATAACTATAGATACATGGTCATATTACTCAGAGCAAGTTATCCATTGCAGAGACTTCCAGAGAGTGCTGTGGTTGTGTATGGAGATTATCTAGGAGACAACGTAGTTCTCAAGGTTCCGAATGGAGAAAAATGGCCGATAGGATTGACTAGCCGTGACGGCAAGGTTTGGTTAAACAAGGGCTGGTCAAAATTCGCAGAGTTTTACTCACTAGACCATGGGAACTTACTGATATTCAGCTTTGAAGGAGATCATTCTCACTTCCACGTGCGGATTTTCTCGAGGAGTTGTTTAGAGAAAGACTTCGGTTCATTTTTTAATGTTGAAGACAACTTAAGTGGTGAGACAGATAATGTTGGTTCATCCGAGTCACCTCTAATGGGGTCGTGTAGCAAGAGAAATGGTAAAGGCCCTGCGTTTCCGCTGAATGCTCCTCCAAGCTTCTTCAAGGTTGTCCTGGATGATACACTTCGAGATGGGAGGATCAAAATTCCACCGATAGGTTCAATGAAATATGAAGATTTTATCGGAGACAAAATGTTCCTTGAAGTTCCAAATGGATTAGTATGGCCAGTAGAACTGTCAAGGCGTGATTGTGAGATTTGGTTACGAAGGGGCTGGCTGAAGTTTGCTCGATTTTACTTCCTCGAGCTGGGGTGCTTATTGTTGTTCACCTACAAAGGGGTCTATTCCCATTTCCAGGTTCGCATTTTTCGAAGGAATACTTTAGAGATGGACTACTTCAATTTAAGCGATGAAGATGAAACCGATTCCAATTCAAGTGGGGAAATTGAATGTCAAAGAATGAAGCATGACAAGGAAAGGAGGACTCACGGTATCTTCACTGTGAAATTACCTATATACTTTGCCCAGGAACATATTTGTGAAAGCGGCGAACGCAAGGTGACTCTAAAGATTTCAGATATGAGATCTTGGTCTGTTAAGTGCATTATCCAGGTATACAACTGTCAGACATGTGCAAGATTCCAGGATCATGGTTGGAAAGCGTTTGCAAGAGACAATAGACTTGAAGAAGGGGATGTGTGTGTACTTGAGGTGATACCGAATACCTCTAAATGTGCACTCAAAGTTTACATATTCCGAGATAAAGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

394

Amino Acids

45.43

Weight (kDa)

6.57

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	40 - 116	7.7e-11	B3 DNA binding domain
B3	PF02362	170 - 262	1.6e-09	B3 DNA binding domain
B3	PF02362	303 - 389	5.6e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14710
malus_domestica	MD02G1160400.v1.1
prunus_persica	Prupe.7G143300_v2.0.a1 Prupe.7G143400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103571
rosa_laevigata	RLG00000017245
rosa_multiflora	Rmu_sc0001530.1_g000007 Rmu_sc0001852.1_g000022
rosa_roxburghii	Rroxscaffold_2G00139520
rosa_rugosa	Rorug02G0115800
rosa_samantha	Rh2AG164100 Rh2AG164900 Rh2BG171300 Rh2BG172000 Rh2CG170800 Rh2DG169400 Rh2DG170400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1023
AciI	CCGC	3 cut(s)	334, 485, 954
AclWI	GGATC	2 cut(s)	554, 1062
AcoI	YGGCCR	2 cut(s)	197, 632
AcsI	RAATTY	2 cut(s)	254, 552
AcuI	CTGAAG	1 cut(s)	707
AcvI	CACGTG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	1113
AfiI	CCNNNNNNNGG	5 cut(s)	443, 563, 715, 744, 763
AflII	CTTAAG	1 cut(s)	397
AflIII	ACRYGT	2 cut(s)	44, 1037
AgsI	TTSAA	9 cut(s)	308, 389, 511, 570, 611, 808, 843, 857, 1094
AjnI	CCWGG	5 cut(s)	519, 762, 933, 1017, 1050
AluBI	AGCT	3 cut(s)	303, 504, 715
AluI	AGCT	3 cut(s)	303, 504, 715
Alw21I	GWGCWC	1 cut(s)	1147
Alw26I	GTCTC	5 cut(s)	109, 153, 401, 588, 1074
Alw44I	GTGCAC	1 cut(s)	1143
AlwI	GGATC	2 cut(s)	554, 1062
Ama87I	CYCGRG	2 cut(s)	343, 710
AoxI	GGCC	3 cut(s)	197, 472, 632
ApaLI	GTGCAC	1 cut(s)	1143
ApoI	RAATTY	2 cut(s)	254, 552
Asp700I	GAANNNNTTC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	5 cut(s)	416, 426, 727, 979, 1132
AsuII	TTCGAA	1 cut(s)	778
AvaI	CYCGRG	2 cut(s)	343, 710
BaeGI	GKGCMC	1 cut(s)	1147
BalI	TGGCCA	1 cut(s)	634
BbrPI	CACGTG	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	1147
BccI	CCATC	2 cut(s)	533, 790
BceAI	ACGGC	2 cut(s)	201, 238
BciT130I	CCWGG	5 cut(s)	521, 764, 935, 1019, 1052
BcoDI	GTCTC	5 cut(s)	109, 153, 401, 588, 1074
BfaI	CTAG	3 cut(s)	155, 213, 275
BfmI	CTRYAG	1 cut(s)	70
BfrI	CTTAAG	1 cut(s)	397
BglI	GCCNNNNNGGC	1 cut(s)	222
BglII	AGATCT	1 cut(s)	992
BisI	GCNGC	1 cut(s)	955
BlsI	GCNGC	1 cut(s)	956
Bme1390I	CCNGG	5 cut(s)	521, 764, 935, 1019, 1052
BmeT110I	CYCGRG	2 cut(s)	343, 710
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	5 cut(s)	521, 764, 935, 1019, 1052
BpiI	GAAGAC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
Bpu14I	TTCGAA	1 cut(s)	778
BpuEI	CTTGAG	2 cut(s)	158, 1136
BsaAI	YACGTR	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	1173
BsaJI	CCNNGG	2 cut(s)	280, 933
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	5 cut(s)	443, 563, 715, 744, 763
Bse1I	ACTGG	1 cut(s)	635
Bse3DI	GCAATG	1 cut(s)	107
Bse8I	GATNNNNATC	1 cut(s)	1173
BseBI	CCWGG	5 cut(s)	521, 764, 935, 1019, 1052
BseDI	CCNNGG	2 cut(s)	280, 933
BseGI	GGATG	3 cut(s)	425, 529, 1108
BseJI	GATNNNNATC	1 cut(s)	1173
BseLI	CCNNNNNNNGG	5 cut(s)	443, 563, 715, 744, 763
BseMI	GCAATG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	106
BseNI	ACTGG	1 cut(s)	635
BseRI	GAGGAG	2 cut(s)	361, 486
BseSI	GKGCMC	1 cut(s)	1147
BseYI	CCCAGC	1 cut(s)	715
BshFI	GGCC	3 cut(s)	199, 474, 634
BsiHKAI	GWGCWC	1 cut(s)	1147
BsiHKCI	CYCGRG	2 cut(s)	343, 710
BslFI	GGGAC	1 cut(s)	8
BslI	CCNNNNNNNGG	5 cut(s)	443, 563, 715, 744, 763
BsmAI	GTCTC	5 cut(s)	109, 153, 401, 588, 1074
BsmFI	GGGAC	1 cut(s)	8
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	3 cut(s)	199, 474, 634
BsoBI	CYCGRG	2 cut(s)	343, 710
Bsp119I	TTCGAA	1 cut(s)	778
Bsp1286I	GDGCHC	1 cut(s)	1147
Bsp143I	GATC	5 cut(s)	313, 546, 992, 1054, 1174
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	3 cut(s)	334, 485, 954
BspANI	GGCC	3 cut(s)	199, 474, 634
BspCNI	CTCAG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	2 cut(s)	554, 1062
BspT104I	TTCGAA	1 cut(s)	778
BspTI	CTTAAG	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	635
BssECI	CCNNGG	2 cut(s)	280, 933
BssMI	GATC	5 cut(s)	313, 546, 992, 1054, 1174
BssNAI	GTATAC	1 cut(s)	1024
BssT1I	CCWWGG	1 cut(s)	280
Bst1107I	GTATAC	1 cut(s)	1024
Bst2UI	CCWGG	5 cut(s)	521, 764, 935, 1019, 1052
Bst4CI	ACNGT	4 cut(s)	645, 899, 910, 1031
BstAFI	CTTAAG	1 cut(s)	397
BstBAI	YACGTR	1 cut(s)	331
BstBI	TTCGAA	1 cut(s)	778
BstC8I	GCNNGC	1 cut(s)	683
BstDEI	CTNAG	1 cut(s)	92
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	3 cut(s)	425, 529, 1108
BstKTI	GATC	5 cut(s)	316, 549, 995, 1057, 1177
BstMAI	GTCTC	5 cut(s)	109, 153, 401, 588, 1074
BstMBI	GATC	5 cut(s)	313, 546, 992, 1054, 1174
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 960
BstNI	CCWGG	5 cut(s)	521, 764, 935, 1019, 1052
BstNSI	RCATGY	2 cut(s)	48, 1041
BstSCI	CCNGG	5 cut(s)	519, 762, 933, 1017, 1050
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	1147
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	992
BstXI	CCANNNNNNTGG	1 cut(s)	1058
BstYI	RGATCY	1 cut(s)	992
BstZ17I	GTATAC	1 cut(s)	1024
BsuRI	GGCC	3 cut(s)	199, 474, 634
BtgI	CCRYGG	1 cut(s)	280
BtgZI	GCGATG	1 cut(s)	831
BtsCI	GGATG	3 cut(s)	425, 529, 1108
BtsIMutI	CAGTG	1 cut(s)	906
Cac8I	GCNNGC	1 cut(s)	683
Cfr13I	GGNCC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	1112
CspCI	CAANNNNNGTGG	4 cut(s)	382, 417, 826, 861
CviAII	CATG	6 cut(s)	45, 79, 281, 875, 1038, 1058
CviQI	GTAC	1 cut(s)	1112
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	5 cut(s)	315, 548, 994, 1056, 1176
DpnII	GATC	5 cut(s)	313, 546, 992, 1054, 1174
EaeI	YGGCCR	2 cut(s)	197, 632
Eco130I	CCWWGG	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	707
Eco72I	CACGTG	1 cut(s)	331
Eco88I	CYCGRG	2 cut(s)	343, 710
EcoO109I	RGGNCCY	1 cut(s)	473
EcoRII	CCWGG	5 cut(s)	519, 762, 933, 1017, 1050
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	6 cut(s)	48, 82, 284, 878, 1041, 1061
FalI	AAGNNNNNCTT	2 cut(s)	772, 804
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	6 cut(s)	44, 78, 280, 874, 1037, 1057
FblI	GTMKAC	1 cut(s)	1023
Fnu4HI	GCNGC	1 cut(s)	955
FokI	GGATG	3 cut(s)	412, 536, 1115
Fsp4HI	GCNGC	1 cut(s)	955
FspBI	CTAG	3 cut(s)	155, 213, 275
GluI	GCNGC	1 cut(s)	955
GsaI	CCCAGC	1 cut(s)	719
HaeIII	GGCC	3 cut(s)	199, 474, 634
Hin1II	CATG	6 cut(s)	48, 82, 284, 878, 1041, 1061
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	5 cut(s)	431, 833, 892, 970, 1047
HphI	GGTGA	5 cut(s)	416, 426, 727, 979, 1132
Hpy166II	GTNNAC	5 cut(s)	735, 1024, 1112, 1145, 1156
Hpy188I	TCNGA	7 cut(s)	95, 183, 430, 593, 985, 1035, 1166
Hpy188III	TCNNGA	4 cut(s)	53, 122, 343, 536
Hpy8I	GTNNAC	5 cut(s)	735, 1024, 1112, 1145, 1156
HpyAV	CCTTC	5 cut(s)	36, 302, 669, 774, 1091
HpyCH4III	ACNGT	4 cut(s)	645, 899, 910, 1031
HpyCH4IV	ACGT	2 cut(s)	165, 330
HpyCH4V	TGCA	5 cut(s)	112, 1011, 1043, 1076, 1145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 960
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	2 cut(s)	165, 330
Hsp92II	CATG	6 cut(s)	48, 82, 284, 878, 1041, 1061
Kzo9I	GATC	5 cut(s)	313, 546, 992, 1054, 1174
LmnI	GCTCC	1 cut(s)	499
MaeI	CTAG	3 cut(s)	155, 213, 275
MaeII	ACGT	2 cut(s)	165, 330
MaeIII	GTNAC	5 cut(s)	40, 218, 432, 669, 967
MalI	GATC	5 cut(s)	315, 548, 994, 1056, 1176
MboI	GATC	5 cut(s)	313, 546, 992, 1054, 1174
MboII	GAAGA	6 cut(s)	401, 499, 593, 833, 895, 1106
MflI	RGATCY	1 cut(s)	992
MhlI	GDGCHC	1 cut(s)	1147
MlsI	TGGCCA	1 cut(s)	634
MluCI	AATT	7 cut(s)	33, 254, 552, 808, 838, 852, 914
MluNI	TGGCCA	1 cut(s)	634
MlyI	GAGTC	3 cut(s)	440, 886, 964
MmeI	TCCRAC	1 cut(s)	1043
MnlI	CCTC	8 cut(s)	339, 447, 507, 537, 719, 882, 1111, 1144
Mox20I	TGGCCA	1 cut(s)	634
MroXI	GAANNNNTTC	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	634
MseI	TTAA	6 cut(s)	32, 236, 381, 398, 812, 1005
MslI	CAYNNNNRTG	1 cut(s)	945
Msp20I	TGGCCA	1 cut(s)	634
MspA1I	CMGCKG	1 cut(s)	487
MspCI	CTTAAG	1 cut(s)	397
MspR9I	CCNGG	5 cut(s)	521, 764, 935, 1019, 1052
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	5 cut(s)	521, 764, 935, 1019, 1052
MwoI	GCNNNNNNNGC	2 cut(s)	222, 960
NcoI	CCATGG	1 cut(s)	280
NdeII	GATC	5 cut(s)	313, 546, 992, 1054, 1174
NlaIII	CATG	6 cut(s)	48, 82, 284, 878, 1041, 1061
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	4 cut(s)	40, 218, 432, 967
NspI	RCATGY	2 cut(s)	48, 1041
NspV	TTCGAA	1 cut(s)	778
PaeR7I	CTCGAG	2 cut(s)	343, 710
PciI	ACATGT	2 cut(s)	44, 1037
PcsI	WCGNNNNNNNCGW	1 cut(s)	775
PctI	GAATGC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	833, 1047
PfoI	TCCNGGA	2 cut(s)	519, 1050
PkrI	GCNGC	1 cut(s)	956
PleI	GAGTC	3 cut(s)	439, 886, 964
PmaCI	CACGTG	1 cut(s)	331
PmlI	CACGTG	1 cut(s)	331
PpsI	GAGTC	3 cut(s)	439, 886, 964
Ppu21I	YACGTR	1 cut(s)	331
PscI	ACATGT	2 cut(s)	44, 1037
Psp6I	CCWGG	5 cut(s)	519, 762, 933, 1017, 1050
PspCI	CACGTG	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	715
PspGI	CCWGG	5 cut(s)	519, 762, 933, 1017, 1050
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	473
PspXI	VCTCGAGB	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	992
RsaI	GTAC	1 cut(s)	1113
RsaNI	GTAC	1 cut(s)	1112
RseI	CAYNNNNRTG	1 cut(s)	945
SaqAI	TTAA	6 cut(s)	32, 236, 381, 398, 812, 1005
SatI	GCNGC	1 cut(s)	955
Sau3AI	GATC	5 cut(s)	313, 546, 992, 1054, 1174
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	3 cut(s)	440, 886, 964
ScrFI	CCNGG	5 cut(s)	521, 764, 935, 1019, 1052
SduI	GDGCHC	1 cut(s)	1147
SfcI	CTRYAG	1 cut(s)	70
Sfr274I	CTCGAG	2 cut(s)	343, 710
SfuI	TTCGAA	1 cut(s)	778
SlaI	CTCGAG	2 cut(s)	343, 710
SmiMI	CAYNNNNRTG	1 cut(s)	945
SmlI	CTYRAG	5 cut(s)	173, 343, 397, 710, 1115
SmoI	CTYRAG	5 cut(s)	173, 343, 397, 710, 1115
Sse9I	AATT	7 cut(s)	33, 254, 552, 808, 838, 852, 914
SsiI	CCGC	3 cut(s)	334, 485, 954
SspMI	CTAG	3 cut(s)	155, 213, 275
StyD4I	CCNGG	5 cut(s)	519, 762, 933, 1017, 1050
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	4 cut(s)	645, 899, 910, 1031
TaiI	ACGT	2 cut(s)	168, 333
TaqI	TCGA	5 cut(s)	344, 535, 697, 711, 778
TasI	AATT	7 cut(s)	33, 254, 552, 808, 838, 852, 914
TatI	WGTACW	1 cut(s)	1111
TauI	GCSGC	1 cut(s)	957
TfiI	GAWTC	2 cut(s)	833, 1047
Tru1I	TTAA	6 cut(s)	32, 236, 381, 398, 812, 1005
Tru9I	TTAA	6 cut(s)	32, 236, 381, 398, 812, 1005
TscAI	CASTG	1 cut(s)	913
TseFI	GTSAC	4 cut(s)	40, 218, 432, 967
Tsp45I	GTSAC	4 cut(s)	40, 218, 432, 967
TspDTI	ATGAA	7 cut(s)	363, 414, 587, 594, 834, 840, 884
TspRI	CASTG	1 cut(s)	913
Vha464I	CTTAAG	1 cut(s)	397
VneI	GTGCAC	1 cut(s)	1143
XapI	RAATTY	2 cut(s)	254, 552
XceI	RCATGY	2 cut(s)	48, 1041
XhoI	CTCGAG	2 cut(s)	343, 710
XmiI	GTMKAC	1 cut(s)	1023
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	3 cut(s)	155, 213, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.