Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0014639

Physical Location & Seq

Genomic Coordinates Forward (+)

15780107 .. 15781843

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G143400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGTTCTAGGAGCAGGAGAGAGGGCAAAGGCCCTGCCTTTCAATTGAGCACTCCATTTCCAAGCTTCCTCAAGATTGTCGTTCAGCAGGCTCTTCAAGATGGGAAGCTTAAAATTCCAAAGATGCTTGTGATGGAATATGGAGATTTAATGGCGGACAAAATATTCCTTGAGGTTCCAGATGGTGCAGTTTGGCCAGTAAAACTGACTAGGCCCTGCAACGGAGAGATTTGGCTGCAAAAGGGATGGCCAGAATTCGCGAAATTTTACTCCCTAAAGCATGGTTGCTTGTTATTCTTCAATTATGGAGGGGAACATTCCCATTTCAGAGTTCGCATTTTCATGAGAAATACTCTAGAGATGAACTATTTCAGTTCAAGTACTGATGATGAAGCTGAAGGCAATTCCAATCCAAGTAGTGAAACTGAAGGTCAAGGAAATAAGCATGACAGGGAAAAAAGAACTCATGGTGCTGATCATGGAGGAAAGTCTACTGCATCAGAAGCTCCATTGAGAACTTTTGCAAAGACAGAACTTGAAGATTTAGCATACTCAAAAGCTTTAAGCTTCAAATCTAACAATCCATTTTTTTGTGATGAAAATGCAGCTATCATACTTATCAACTCACCTGATCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

214

Amino Acids

24.0

Weight (kDa)

7.02

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014639)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14710
malus_domestica	MD02G1160400.v1.1
prunus_persica	Prupe.7G143300_v2.0.a1 Prupe.7G143400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0103571
rosa_laevigata	RLG00000017245
rosa_multiflora	Rmu_sc0001530.1_g000007 Rmu_sc0001852.1_g000022
rosa_roxburghii	Rroxscaffold_2G00139520
rosa_rugosa	Rorug02G0115800
rosa_samantha	Rh2AG164100 Rh2AG164900 Rh2BG171300 Rh2BG172000 Rh2CG170800 Rh2DG169400 Rh2DG170400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	491
AccII	CGCG	1 cut(s)	260
AciI	CCGC	1 cut(s)	155
AcoI	YGGCCR	2 cut(s)	194, 248
AcsI	RAATTY	3 cut(s)	114, 254, 263
AcuI	CTGAAG	2 cut(s)	417, 447
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	6 cut(s)	44, 98, 301, 378, 539, 571
AluBI	AGCT	7 cut(s)	66, 109, 395, 506, 560, 567, 608
AluI	AGCT	7 cut(s)	66, 109, 395, 506, 560, 567, 608
Alw21I	GWGCWC	1 cut(s)	53
AoxI	GGCC	4 cut(s)	31, 194, 212, 248
ApeKI	GCWGC	2 cut(s)	235, 605
ApoI	RAATTY	3 cut(s)	114, 254, 263
Asp700I	GAANNNNTTC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	32, 213
AsuHPI	GGTGA	1 cut(s)	618
BalI	TGGCCA	2 cut(s)	196, 250
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	222, 617
BccI	CCATC	4 cut(s)	95, 127, 176, 240
BclI	TGATCA	1 cut(s)	475
BfaI	CTAG	3 cut(s)	9, 210, 356
BisI	GCNGC	2 cut(s)	236, 606
BlsI	GCNGC	2 cut(s)	237, 607
BmcAI	AGTACT	1 cut(s)	382
BmgT120I	GGNCC	2 cut(s)	32, 213
BmiI	GGNNCC	1 cut(s)	177
BmsI	GCATC	2 cut(s)	114, 506
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BpuEI	CTTGAG	2 cut(s)	56, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	197
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	222, 617
BsgI	GTGCAG	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	4 cut(s)	33, 196, 214, 250
BsiHKAI	GWGCWC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	221
BsnI	GGCC	4 cut(s)	33, 196, 214, 250
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	475, 631
Bsp68I	TCGCGA	1 cut(s)	260
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	4 cut(s)	33, 196, 214, 250
BspFNI	CGCG	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	177
BspQI	GCTCTTC	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	197
BssMI	GATC	2 cut(s)	475, 631
Bst6I	CTCTTC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	251
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	2 cut(s)	478, 634
BstMBI	GATC	2 cut(s)	475, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	222, 617
BsuRI	GGCC	4 cut(s)	33, 196, 214, 250
BtsCI	GGATG	1 cut(s)	251
BtuMI	TCGCGA	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	90
CciI	TCATGA	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	32, 213
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	5 cut(s)	281, 343, 446, 467, 479
CviQI	GTAC	1 cut(s)	381
DpnI	GATC	2 cut(s)	477, 633
DpnII	GATC	2 cut(s)	475, 631
EaeI	YGGCCR	2 cut(s)	194, 248
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
EciI	GGCGGA	1 cut(s)	170
Eco57I	CTGAAG	2 cut(s)	417, 447
EcoO109I	RGGNCCY	2 cut(s)	32, 213
EcoRI	GAATTC	1 cut(s)	254
FaeI	CATG	5 cut(s)	284, 346, 449, 470, 482
FaiI	YATR	9 cut(s)	141, 282, 306, 344, 447, 468, 480, 550, 614
FatI	CATG	5 cut(s)	280, 342, 445, 466, 478
FbaI	TGATCA	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	2 cut(s)	236, 606
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	2 cut(s)	236, 606
FspBI	CTAG	3 cut(s)	9, 210, 356
GluI	GCNGC	2 cut(s)	236, 606
HaeIII	GGCC	4 cut(s)	33, 196, 214, 250
Hin1II	CATG	5 cut(s)	284, 346, 449, 470, 482
HindIII	AAGCTT	4 cut(s)	64, 107, 558, 565
HphI	GGTGA	1 cut(s)	618
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	2 cut(s)	329, 502
Hpy188III	TCNNGA	6 cut(s)	73, 98, 179, 259, 343, 356
Hpy8I	GTNNAC	1 cut(s)	492
HpyAV	CCTTC	2 cut(s)	392, 422
HpyCH4V	TGCA	6 cut(s)	188, 219, 238, 497, 524, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
Hsp92II	CATG	5 cut(s)	284, 346, 449, 470, 482
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	475, 631
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	12, 511
LpnPI	CCDG	7 cut(s)	48, 74, 192, 210, 229, 264, 436
Lsp1109I	GCAGC	2 cut(s)	222, 617
LweI	GCATC	2 cut(s)	114, 506
MaeI	CTAG	3 cut(s)	9, 210, 356
MalI	GATC	2 cut(s)	477, 633
MboI	GATC	2 cut(s)	475, 631
MboII	GAAGA	3 cut(s)	86, 289, 551
MfeI	CAATTG	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	53
MlsI	TGGCCA	2 cut(s)	196, 250
MluCI	AATT	6 cut(s)	44, 114, 254, 263, 301, 403
MluNI	TGGCCA	2 cut(s)	196, 250
MnlI	CCTC	5 cut(s)	16, 80, 166, 302, 476
Mox20I	TGGCCA	2 cut(s)	196, 250
MroXI	GAANNNNTTC	1 cut(s)	368
MscI	TGGCCA	2 cut(s)	196, 250
MseI	TTAA	3 cut(s)	111, 149, 563
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	2 cut(s)	196, 250
MunI	CAATTG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	503
NdeII	GATC	2 cut(s)	475, 631
NlaIII	CATG	5 cut(s)	284, 346, 449, 470, 482
NlaIV	GGNNCC	1 cut(s)	177
NruI	TCGCGA	1 cut(s)	260
PagI	TCATGA	1 cut(s)	342
PciSI	GCTCTTC	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	237, 607
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	32, 213
RruI	TCGCGA	1 cut(s)	260
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	111, 149, 563
SatI	GCNGC	2 cut(s)	236, 606
Sau3AI	GATC	2 cut(s)	475, 631
Sau96I	GGNCC	2 cut(s)	32, 213
ScaI	AGTACT	1 cut(s)	382
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	2 cut(s)	114, 506
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	2 cut(s)	71, 170
SmoI	CTYRAG	2 cut(s)	71, 170
Sse9I	AATT	6 cut(s)	44, 114, 254, 263, 301, 403
SsiI	CCGC	1 cut(s)	155
SspI	AATATT	1 cut(s)	165
SspMI	CTAG	3 cut(s)	9, 210, 356
TasI	AATT	6 cut(s)	44, 114, 254, 263, 301, 403
TatI	WGTACW	1 cut(s)	380
Tru1I	TTAA	3 cut(s)	111, 149, 563
Tru9I	TTAA	3 cut(s)	111, 149, 563
TseI	GCWGC	2 cut(s)	235, 605
TspDTI	ATGAA	4 cut(s)	331, 377, 405, 612
TspGWI	ACGGA	1 cut(s)	237
XapI	RAATTY	3 cut(s)	114, 254, 263
XbaI	TCTAGA	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	3 cut(s)	9, 210, 356
ZrmI	AGTACT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.