Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0018351

Physical Location & Seq

Genomic Coordinates Forward (+)

8671755 .. 8674610

Gene Structure 2856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAAGAAGTTGTGGAGGAATTAAAACACATTCAGGCACTGAAGGAAAAACCAAACCAGTCCGAGCCCACCATGCAATCTTCTGCAAGTCATTTGACTACGAGGAGCGATGTGTATGGCTTTGGTGTTGTGCTGCTAGAAATTCTCACAGGACTACCAGCACTCGATGCTAATCGCCCCAAGGATCCGGAACAATGTAATCTGGTAGACTGGGCTAAACCACTTCTCTCGAATAAAAGAAAGTTGAAAACCATCATTGATGCGCGGATGGAAGGCCAATACTCGATGAATGCAGCATCAAAGGCAGCACAGATTACTCTAAAATGTCTAGCACCACTTCCTAAATACCGACCGTGCATGAAAGAAGTTGTGGAGGAATTGGAACAGATTCAGGCAATCAAGGGAAAACTTACGTCTACTTCGAGGCTTCCAGCTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

147

Amino Acids

16.23

Weight (kDa)

8.41

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	29 - 127	1.8e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018351)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15290
rosa_chinensis	RchiOBHm_Chr2g0104651
rosa_laevigata	RLG00000017193
rosa_multiflora	Rmu_co8326929.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140060
rosa_samantha	Rh2AG159000 Rh2BG165400 Rh2CG176200 Rh2CG176900 Rh2DG164200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	207, 416
AccII	CGCG	1 cut(s)	265
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	2 cut(s)	179, 192
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	2 cut(s)	434, 438
AluI	AGCT	2 cut(s)	434, 438
AlwI	GGATC	2 cut(s)	179, 192
AlwNI	CAGNNNCTG	1 cut(s)	40
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	3 cut(s)	133, 293, 305
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	265
AsuNHI	GCTAGC	1 cut(s)	434
BamHI	GGATCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	120, 305, 317
BccI	CCATC	2 cut(s)	260, 262
BfaI	CTAG	3 cut(s)	137, 329, 435
BisI	GCNGC	3 cut(s)	134, 294, 306
BlsI	GCNGC	3 cut(s)	135, 295, 307
BmiI	GGNNCC	1 cut(s)	186
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	157, 250, 305
BmtI	GCTAGC	1 cut(s)	438
BmuI	ACTGGG	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	58, 215
Bse8I	GATNNNNATC	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	171
BseNI	ACTGG	2 cut(s)	58, 215
BseRI	GAGGAG	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	120, 305, 317
Bsh1236I	CGCG	1 cut(s)	265
Bsh1285I	CGRYCG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	276
BsiEI	CGRYCG	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	276
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	186
BspOI	GCTAGC	1 cut(s)	438
BspPI	GGATC	2 cut(s)	179, 192
BsrI	ACTGG	2 cut(s)	58, 215
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMCI	CGRYCG	1 cut(s)	353
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 167, 302
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	3 cut(s)	120, 305, 317
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	276
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	436
CaiI	CAGNNNCTG	1 cut(s)	40
CfoI	GCGC	1 cut(s)	265
CviAII	CATG	2 cut(s)	73, 358
CviJI	RGCY	7 cut(s)	67, 120, 215, 276, 427, 434, 438
CviKI_1	RGCY	7 cut(s)	67, 120, 215, 276, 427, 434, 438
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	76, 361
FaiI	YATR	3 cut(s)	74, 117, 359
FatI	CATG	2 cut(s)	72, 357
FblI	GTMKAC	2 cut(s)	207, 416
Fnu4HI	GCNGC	3 cut(s)	134, 294, 306
FokI	GGATG	1 cut(s)	280
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	3 cut(s)	134, 294, 306
FspBI	CTAG	3 cut(s)	137, 329, 435
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	3 cut(s)	134, 294, 306
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	1 cut(s)	188
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	2 cut(s)	76, 361
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	188
Hpy166II	GTNNAC	2 cut(s)	208, 417
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	188, 229
Hpy8I	GTNNAC	2 cut(s)	208, 417
HpyAV	CCTTC	2 cut(s)	37, 266
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	4 cut(s)	76, 86, 293, 357
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 167, 302
HpySE526I	ACGT	1 cut(s)	413
Hsp92II	CATG	2 cut(s)	76, 361
HspAI	GCGC	1 cut(s)	263
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	8 cut(s)	20, 71, 135, 171, 188, 196, 201, 377
Lsp1109I	GCAGC	3 cut(s)	120, 305, 317
LweI	GCATC	3 cut(s)	157, 250, 305
MaeI	CTAG	3 cut(s)	137, 329, 435
MaeII	ACGT	1 cut(s)	413
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	2 cut(s)	17, 72
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	3 cut(s)	20, 141, 377
MnlI	CCTC	4 cut(s)	10, 96, 367, 417
MroI	TCCGGA	1 cut(s)	187
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	1 cut(s)	23
MspI	CCGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	295
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	3 cut(s)	73, 167, 302
NdeII	GATC	1 cut(s)	184
NheI	GCTAGC	1 cut(s)	434
NlaIII	CATG	2 cut(s)	76, 361
NlaIV	GGNNCC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PctI	GAATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	3 cut(s)	135, 295, 307
PspN4I	GGNNCC	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	3 cut(s)	134, 294, 306
Sau3AI	GATC	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	3 cut(s)	416, 436, 440
SfaNI	GCATC	3 cut(s)	157, 250, 305
Sse9I	AATT	3 cut(s)	20, 141, 377
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	3 cut(s)	137, 329, 435
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	4 cut(s)	165, 230, 284, 422
TasI	AATT	3 cut(s)	20, 141, 377
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	3 cut(s)	133, 293, 305
TspDTI	ATGAA	2 cut(s)	302, 374
TspRI	CASTG	1 cut(s)	45
XapI	RAATTY	1 cut(s)	141
XmiI	GTMKAC	2 cut(s)	207, 416
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	3 cut(s)	137, 329, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.