Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018351

Physical Location & Seq

Genomic Coordinates Forward (+)

13999646 .. 14001963

Gene Structure 2318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017193

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGTCCATCGATGGCGATGTCGACTCTTGTTCAGGGACCGGAAGGCTAGCGGCAAAGGTTGGAGGAAGGTGATGGCAATTCCGGACTGCAGTAGGGGTGTGAAGCAAGTTTGGACCGATGGTTGGGTTCGGTTTAGCCGATTTTGGATCTGGACCCTTCTTTGGGCAGAGGTGGACTTTCTAGGAAGGCTTTCTCATCCGAACCTTGTTAAGCTATTAGGACACTGCTCAGAGGACAAGGACCCACGAGAAAGGCTTTCTCATCCCAACCTTGTTAAGGTATTAGGACACTGCTCAGACGACAAGGACCCACGAGAAAGGCTTTCTCATCCCAACCATGTTAAGCTATCAGAACACTGCTCAGCAGACAAGAAGCCACCGGGAAGGCTCCTTGTCTGTGAATTCAACAACCCTGTTGAGCTATTAGAAGTAGAACCCTGCTCCGCGGACAAGGAGCTACGCCTTGTCTATGAATTCATGCAGAAAGGAAGCTTGGAGGGGTATCTTTTCAAAAGGAACCCAGACATCGAAGCAGTACTGTCTTGTGACAACAGACTCAACATAGCTATCGGAGTAGCTCGGGCCTTGATTTCTTACACAGTTTACCAAAACAAATCATACACAGAGATGTCAAATCCTCTAATATATTGCTTGATGAGGTTTAATTACAATGTAAAACTCTCAGATTTTGGCTTCGCAATATTGGGGCCAACTGATGGAGAATCATATGTAGAGACTGAAATTATCGGCACATTTGGTTATGCTGCTCCAGAATATGTTGCAACAGGTCATTTGCATGTGAAGAGCGATGTGTATAGCTTTGGTGCTGTGCTGCTCGAACTTCTGACAGGTTTAAGGGTCCCTGATAAAGATCGTTCTGTTCCGAAACAGAATTTGGTTCAGTGGGCTAAGCCACTTCTCTCTTGTAAGAGTCATATGAAAACCTTCATGGATGCACGGATAAAGGGCCAATATTCCTCAGAGGAAGCATTACAGACAGCAAAGATTACCCGAAAATGTCTAGCACGGGATCCTGAAAGTCGTCCTTCGATGACAGAAGTTGCTGATGCATTGGAACAGATTGAGGCAATGAAGGAAAAATCAAAACAAAATGAACTTACCACCACGAAATCTACTTCTAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

383

Amino Acids

43.59

Weight (kDa)

8.74

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	146 - 357	2.3e-19	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	147 - 355	1.4e-16	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018351)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15290
rosa_chinensis	RchiOBHm_Chr2g0104651
rosa_laevigata	RLG00000017193
rosa_multiflora	Rmu_co8326929.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140060
rosa_samantha	Rh2AG159000 Rh2BG165400 Rh2CG176200 Rh2CG176900 Rh2DG164200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	716
AccI	GTMKAC	1 cut(s)	22
AccII	CGCG	1 cut(s)	446
AccIII	TCCGGA	1 cut(s)	82
AciI	CCGC	3 cut(s)	51, 444, 446
AclWI	GGATC	3 cut(s)	155, 1025, 1038
AcsI	RAATTY	3 cut(s)	401, 473, 892
AfaI	GTAC	1 cut(s)	537
AfiI	CCNNNNNNNGG	5 cut(s)	123, 162, 163, 277, 716
AgsI	TTSAA	2 cut(s)	406, 511
AjuI	GAANNNNNNNTTGG	4 cut(s)	476, 508, 878, 910
AluBI	AGCT	8 cut(s)	214, 346, 421, 457, 492, 566, 578, 819
AluI	AGCT	8 cut(s)	214, 346, 421, 457, 492, 566, 578, 819
Alw26I	GTCTC	1 cut(s)	728
AlwI	GGATC	3 cut(s)	155, 1025, 1038
Ama87I	CYCGRG	1 cut(s)	579
Aor13HI	TCCGGA	1 cut(s)	82
AoxI	GGCC	3 cut(s)	582, 707, 967
ApeKI	GCWGC	2 cut(s)	764, 832
ApoI	RAATTY	3 cut(s)	401, 473, 892
Asp700I	GAANNNNTTC	2 cut(s)	190, 944
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	82
AsuNHI	GCTAGC	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	579
AvaII	GGWCC	7 cut(s)	4, 37, 114, 153, 241, 307, 859
BamHI	GGATCC	1 cut(s)	1030
BauI	CACGAG	2 cut(s)	246, 312
BbvI	GCAGC	2 cut(s)	751, 819
BccI	CCATC	5 cut(s)	6, 15, 67, 113, 710
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	1 cut(s)	728
BfaI	CTAG	4 cut(s)	48, 182, 1022, 1140
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	3 cut(s)	52, 765, 833
BlpI	GCTNAGC	2 cut(s)	361, 909
BlsI	GCNGC	3 cut(s)	53, 766, 834
BmcAI	AGTACT	1 cut(s)	537
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	7 cut(s)	4, 37, 114, 153, 241, 307, 859
BmeT110I	CYCGRG	1 cut(s)	579
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	2 cut(s)	943, 1057
BmtI	GCTAGC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	753
Bpu1102I	GCTNAGC	2 cut(s)	361, 909
BpuMI	CCSGG	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	870
BsaJI	CCNNGG	1 cut(s)	444
BsaWI	WCCGGW	2 cut(s)	39, 82
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 162, 163, 277, 716
Bse3DI	GCAATG	1 cut(s)	1095
Bse8I	GATNNNNATC	1 cut(s)	870
BseAI	TCCGGA	1 cut(s)	82
BseCI	ATCGAT	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	4 cut(s)	196, 262, 328, 958
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	5 cut(s)	123, 162, 163, 277, 716
BseMI	GCAATG	1 cut(s)	1095
BseMII	CTCAG	5 cut(s)	243, 309, 375, 696, 993
BseXI	GCAGC	2 cut(s)	751, 819
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	3 cut(s)	584, 709, 969
BshVI	ATCGAT	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	579
BsiSI	CCGG	3 cut(s)	40, 83, 380
BslFI	GGGAC	2 cut(s)	50, 845
BslI	CCNNNNNNNGG	5 cut(s)	123, 162, 163, 277, 716
BsmAI	GTCTC	1 cut(s)	728
BsmFI	GGGAC	2 cut(s)	50, 845
BsnI	GGCC	3 cut(s)	584, 709, 969
BsoBI	CYCGRG	1 cut(s)	579
Bsp13I	TCCGGA	1 cut(s)	82
Bsp143I	GATC	3 cut(s)	147, 871, 1030
Bsp1720I	GCTNAGC	2 cut(s)	361, 909
BspACI	CCGC	3 cut(s)	51, 444, 446
BspANI	GGCC	3 cut(s)	584, 709, 969
BspCNI	CTCAG	5 cut(s)	242, 308, 374, 695, 992
BspDI	ATCGAT	1 cut(s)	10
BspEI	TCCGGA	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	446
BspMAI	CTGCAG	1 cut(s)	92
BspOI	GCTAGC	1 cut(s)	51
BspPI	GGATC	3 cut(s)	155, 1025, 1038
BspQI	GCTCTTC	1 cut(s)	797
BsrDI	GCAATG	1 cut(s)	1095
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	3 cut(s)	147, 871, 1030
BssSI	CACGAG	2 cut(s)	246, 312
Bst2BI	CACGAG	2 cut(s)	246, 312
Bst4CI	ACNGT	2 cut(s)	540, 601
Bst6I	CTCTTC	1 cut(s)	797
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	6 cut(s)	229, 295, 361, 682, 909, 979
BstDSI	CCRYGG	1 cut(s)	444
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstF5I	GGATG	4 cut(s)	196, 262, 328, 958
BstFNI	CGCG	1 cut(s)	446
BstKTI	GATC	3 cut(s)	150, 874, 1033
BstMAI	GTCTC	1 cut(s)	728
BstMBI	GATC	3 cut(s)	147, 871, 1030
BstNSI	RCATGY	1 cut(s)	800
BstSCI	CCNGG	1 cut(s)	379
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	751, 819
BstX2I	RGATCY	2 cut(s)	147, 1030
BstYI	RGATCY	2 cut(s)	147, 1030
Bsu15I	ATCGAT	1 cut(s)	10
BsuRI	GGCC	3 cut(s)	584, 709, 969
BsuTUI	ATCGAT	1 cut(s)	10
BtgI	CCRYGG	1 cut(s)	444
BtgZI	GCGATG	2 cut(s)	31, 822
BtsCI	GGATG	4 cut(s)	196, 262, 328, 958
BtsI	GCAGTG	3 cut(s)	223, 289, 355
BtsIMutI	CAGTG	4 cut(s)	223, 289, 355, 908
Cac8I	GCNNGC	1 cut(s)	49
Cfr42I	CCGCGG	1 cut(s)	447
ClaI	ATCGAT	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	536
CviAII	CATG	4 cut(s)	338, 478, 797, 949
CviQI	GTAC	1 cut(s)	536
DdeI	CTNAG	6 cut(s)	229, 295, 361, 682, 909, 979
DpnI	GATC	3 cut(s)	149, 873, 1032
DpnII	GATC	3 cut(s)	147, 871, 1030
Eam1104I	CTCTTC	1 cut(s)	797
EarI	CTCTTC	1 cut(s)	797
Eco47I	GGWCC	7 cut(s)	4, 37, 114, 153, 241, 307, 859
Eco88I	CYCGRG	1 cut(s)	579
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoO109I	RGGNCCY	3 cut(s)	241, 307, 859
EcoRI	GAATTC	2 cut(s)	401, 473
EcoT22I	ATGCAT	1 cut(s)	1072
FaeI	CATG	4 cut(s)	341, 481, 800, 952
FalI	AAGNNNNNCTT	2 cut(s)	1030, 1062
FaqI	GGGAC	2 cut(s)	50, 845
FatI	CATG	4 cut(s)	337, 477, 796, 948
FauNDI	CATATG	2 cut(s)	727, 936
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	3 cut(s)	52, 765, 833
FokI	GGATG	4 cut(s)	183, 249, 315, 965
Fsp4HI	GCNGC	3 cut(s)	52, 765, 833
FspBI	CTAG	4 cut(s)	48, 182, 1022, 1140
GluI	GCNGC	3 cut(s)	52, 765, 833
GsuI	CTGGAG	1 cut(s)	753
HaeIII	GGCC	3 cut(s)	584, 709, 969
HapII	CCGG	3 cut(s)	40, 83, 380
Hin1II	CATG	4 cut(s)	341, 481, 800, 952
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	4 cut(s)	24, 555, 722, 931
HpaII	CCGG	3 cut(s)	40, 83, 380
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	3 cut(s)	23, 175, 604
Hpy188I	TCNGA	9 cut(s)	201, 232, 298, 352, 572, 685, 846, 885, 982
Hpy188III	TCNNGA	4 cut(s)	83, 151, 770, 1034
Hpy8I	GTNNAC	3 cut(s)	23, 175, 604
HpyAV	CCTTC	8 cut(s)	37, 61, 167, 180, 378, 955, 1056, 1087
HpyCH4III	ACNGT	2 cut(s)	540, 601
HpyCH4V	TGCA	6 cut(s)	90, 481, 782, 796, 956, 1070
HpyF3I	CTNAG	6 cut(s)	229, 295, 361, 682, 909, 979
Hsp92II	CATG	4 cut(s)	341, 481, 800, 952
KflI	GGGWCCC	1 cut(s)	859
Kpn2I	TCCGGA	1 cut(s)	82
KspI	CCGCGG	1 cut(s)	447
Kzo9I	GATC	3 cut(s)	147, 871, 1030
LguI	GCTCTTC	1 cut(s)	797
LmnI	GCTCC	4 cut(s)	393, 446, 454, 772
Lsp1109I	GCAGC	2 cut(s)	751, 819
LweI	GCATC	2 cut(s)	943, 1057
MaeI	CTAG	4 cut(s)	48, 182, 1022, 1140
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	3 cut(s)	149, 873, 1032
MboI	GATC	3 cut(s)	147, 871, 1030
MboII	GAAGA	1 cut(s)	814
MflI	RGATCY	2 cut(s)	147, 1030
MluCI	AATT	6 cut(s)	78, 401, 473, 664, 741, 892
MlyI	GAGTC	3 cut(s)	18, 549, 940
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	9 cut(s)	57, 163, 226, 490, 648, 651, 976, 988, 1078
Mph1103I	ATGCAT	1 cut(s)	1072
MroI	TCCGGA	1 cut(s)	82
MroXI	GAANNNNTTC	2 cut(s)	190, 944
MseI	TTAA	6 cut(s)	210, 276, 342, 663, 854, 1147
MslI	CAYNNNNRTG	2 cut(s)	626, 795
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	3 cut(s)	40, 83, 380
MspR9I	CCNGG	1 cut(s)	381
MvnI	CGCG	1 cut(s)	446
NciI	CCSGG	1 cut(s)	381
NdeI	CATATG	2 cut(s)	727, 936
NdeII	GATC	3 cut(s)	147, 871, 1030
NheI	GCTAGC	1 cut(s)	47
NlaIII	CATG	4 cut(s)	341, 481, 800, 952
NmuCI	GTSAC	1 cut(s)	545
NsiI	ATGCAT	1 cut(s)	1072
NspI	RCATGY	1 cut(s)	800
PciSI	GCTCTTC	1 cut(s)	797
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PdmI	GAANNNNTTC	2 cut(s)	190, 944
PfeI	GAWTC	1 cut(s)	722
PflMI	CCANNNNNTGG	1 cut(s)	716
PkrI	GCNGC	3 cut(s)	53, 766, 834
PleI	GAGTC	3 cut(s)	18, 549, 939
PpsI	GAGTC	3 cut(s)	18, 549, 939
PpuMI	RGGWCCY	3 cut(s)	241, 307, 859
Psp5II	RGGWCCY	3 cut(s)	241, 307, 859
PspPPI	RGGWCCY	3 cut(s)	241, 307, 859
PstI	CTGCAG	1 cut(s)	92
PsuI	RGATCY	2 cut(s)	147, 1030
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
RseI	CAYNNNNRTG	2 cut(s)	626, 795
SacII	CCGCGG	1 cut(s)	447
SalI	GTCGAC	1 cut(s)	21
SapI	GCTCTTC	1 cut(s)	797
SaqAI	TTAA	6 cut(s)	210, 276, 342, 663, 854, 1147
SatI	GCNGC	3 cut(s)	52, 765, 833
Sau3AI	GATC	3 cut(s)	147, 871, 1030
ScaI	AGTACT	1 cut(s)	537
SchI	GAGTC	3 cut(s)	18, 549, 940
ScrFI	CCNGG	1 cut(s)	381
SfaNI	GCATC	2 cut(s)	943, 1057
SfcI	CTRYAG	1 cut(s)	88
Sfr303I	CCGCGG	1 cut(s)	447
SgrBI	CCGCGG	1 cut(s)	447
SinI	GGWCC	7 cut(s)	4, 37, 114, 153, 241, 307, 859
SmiMI	CAYNNNNRTG	2 cut(s)	626, 795
Sse9I	AATT	6 cut(s)	78, 401, 473, 664, 741, 892
SsiI	CCGC	3 cut(s)	51, 444, 446
SspI	AATATT	2 cut(s)	702, 974
SspMI	CTAG	4 cut(s)	48, 182, 1022, 1140
StyD4I	CCNGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	540, 601
TaqI	TCGA	5 cut(s)	10, 22, 528, 837, 1049
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	6 cut(s)	78, 401, 473, 664, 741, 892
TatI	WGTACW	1 cut(s)	535
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	722
Tru1I	TTAA	6 cut(s)	210, 276, 342, 663, 854, 1147
Tru9I	TTAA	6 cut(s)	210, 276, 342, 663, 854, 1147
TscAI	CASTG	4 cut(s)	230, 296, 362, 908
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	764, 832
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	6 cut(s)	466, 486, 937, 953, 1106, 1128
TspGWI	ACGGA	1 cut(s)	973
TspRI	CASTG	4 cut(s)	230, 296, 362, 908
Van91I	CCANNNNNTGG	1 cut(s)	716
VpaK11BI	GGWCC	7 cut(s)	4, 37, 114, 153, 241, 307, 859
XagI	CCTNNNNNAGG	1 cut(s)	275
XapI	RAATTY	3 cut(s)	401, 473, 892
XceI	RCATGY	1 cut(s)	800
XmiI	GTMKAC	1 cut(s)	22
XmnI	GAANNNNTTC	2 cut(s)	190, 944
XspI	CTAG	4 cut(s)	48, 182, 1022, 1140
ZrmI	AGTACT	1 cut(s)	537
Zsp2I	ATGCAT	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.