Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018351

Physical Location & Seq

Genomic Coordinates Forward (+)

16135550 .. 16143662

Gene Structure 8113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG176200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCCTATTGCTGTCAAGAAACTAGAAAAAGTGCTAGATTTTGAAGAGTGGCAGAATTACAATGCAAAACTCTCGGATTTTGGCTTGGCGAAATTGGGGCCAACTGGTGGAGACTCACATGTGTCAACTATGGTTATGGGGACATATGGGTATGCTGCGCCAGAATACATTGCAACAGGTCATTTGTACGTGAAGAGTGATGTGTATGGCTTTGGTGTTGTGCTGCTTGAACTTCTCACAGGGTTACGAGCACACGATCCTAAACGCCCCCAGGGACAAGTGAATCTGGTAGACTGGGCTAAACCACTTCTTTCAAATGAAAGAATGTTGAAAACCATCATCGATGCGCGGATGGAAGGCCAATATTCCATGAAAGCAGCATCAAGGGCAGGACAGATTACTCTAAAATGTCTACCACCAGATCCTAAAATCCGACCTTCCATGAAAGAAGTTGTGGAGGAACTGGAACAGATTCAGGCAATCAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

163

Amino Acids

18.13

Weight (kDa)

8.56

Isoelectric Point (pI)

21.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	19 - 153	5e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	19 - 155	2.6e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018351)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15290
rosa_chinensis	RchiOBHm_Chr2g0104651
rosa_laevigata	RLG00000017193
rosa_multiflora	Rmu_co8326929.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140060
rosa_samantha	Rh2AG159000 Rh2BG165400 Rh2CG176200 Rh2CG176900 Rh2DG164200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	107
AccI	GTMKAC	2 cut(s)	291, 412
AccII	CGCG	1 cut(s)	349
AciI	CCGC	1 cut(s)	349
AclWI	GGATC	2 cut(s)	251, 416
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	4 cut(s)	44, 230, 315, 331
AjnI	CCWGG	1 cut(s)	270
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	2 cut(s)	251, 416
AoxI	GGCC	2 cut(s)	98, 358
ApeKI	GCWGC	3 cut(s)	155, 223, 377
Asp700I	GAANNNNTTC	1 cut(s)	471
AspLEI	GCGC	2 cut(s)	160, 349
AspS9I	GGNCC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	3 cut(s)	142, 210, 389
BccI	CCATC	2 cut(s)	344, 346
BcgI	CGANNNNNNTGC	2 cut(s)	54, 88
BciT130I	CCWGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	2 cut(s)	23, 35
BisI	GCNGC	3 cut(s)	156, 224, 378
BlsI	GCNGC	3 cut(s)	157, 225, 379
Bme1390I	CCNGG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	272
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	2 cut(s)	334, 389
BmuI	ACTGGG	1 cut(s)	304
Bsa29I	ATCGAT	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	270, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	3 cut(s)	109, 299, 468
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	272
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	270, 271
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	168
BseNI	ACTGG	3 cut(s)	109, 299, 468
BseXI	GCAGC	3 cut(s)	142, 210, 389
Bsh1236I	CGCG	1 cut(s)	349
BshFI	GGCC	2 cut(s)	100, 360
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	253
BslFI	GGGAC	2 cut(s)	154, 288
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	2 cut(s)	154, 288
BsnI	GGCC	2 cut(s)	100, 360
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	256, 421
BspACI	CCGC	1 cut(s)	349
BspANI	GGCC	2 cut(s)	100, 360
BspDI	ATCGAT	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	2 cut(s)	251, 416
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	3 cut(s)	109, 299, 468
BssECI	CCNNGG	2 cut(s)	270, 271
BssMI	GATC	2 cut(s)	256, 421
Bst2UI	CCWGG	1 cut(s)	272
Bst6I	CTCTTC	2 cut(s)	39, 188
BstBAI	YACGTR	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	349
BstHHI	GCGC	2 cut(s)	160, 349
BstKTI	GATC	2 cut(s)	259, 424
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	2 cut(s)	256, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	3 cut(s)	142, 210, 389
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	100, 360
BsuTUI	ATCGAT	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	357
CfoI	GCGC	2 cut(s)	160, 349
Cfr13I	GGNCC	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	119, 370, 442
CviJI	RGCY	5 cut(s)	84, 100, 210, 299, 360
CviKI_1	RGCY	5 cut(s)	84, 100, 210, 299, 360
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	2 cut(s)	258, 423
DpnII	GATC	2 cut(s)	256, 421
Eam1104I	CTCTTC	2 cut(s)	39, 188
EarI	CTCTTC	2 cut(s)	39, 188
EcoRII	CCWGG	1 cut(s)	270
FaeI	CATG	3 cut(s)	122, 373, 445
FaiI	YATR	9 cut(s)	120, 131, 137, 145, 147, 153, 207, 371, 443
FaqI	GGGAC	2 cut(s)	154, 288
FatI	CATG	3 cut(s)	118, 369, 441
FauNDI	CATATG	1 cut(s)	145
FblI	GTMKAC	2 cut(s)	291, 412
Fnu4HI	GCNGC	3 cut(s)	156, 224, 378
FokI	GGATG	1 cut(s)	364
Fsp4HI	GCNGC	3 cut(s)	156, 224, 378
FspBI	CTAG	2 cut(s)	23, 35
GlaI	GCGC	2 cut(s)	159, 348
GluI	GCNGC	3 cut(s)	156, 224, 378
HaeIII	GGCC	2 cut(s)	100, 360
HhaI	GCGC	2 cut(s)	160, 349
Hin1II	CATG	3 cut(s)	122, 373, 445
Hin6I	GCGC	2 cut(s)	158, 347
HinP1I	GCGC	2 cut(s)	158, 347
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	3 cut(s)	113, 283, 472
Hpy166II	GTNNAC	3 cut(s)	126, 292, 413
Hpy188I	TCNGA	2 cut(s)	76, 434
Hpy188III	TCNNGA	2 cut(s)	16, 484
Hpy8I	GTNNAC	3 cut(s)	126, 292, 413
HpyAV	CCTTC	2 cut(s)	350, 447
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	65, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	122, 373, 445
HspAI	GCGC	2 cut(s)	158, 347
Kzo9I	GATC	2 cut(s)	256, 421
Lsp1109I	GCAGC	3 cut(s)	142, 210, 389
LweI	GCATC	2 cut(s)	334, 389
MaeI	CTAG	2 cut(s)	23, 35
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	2 cut(s)	258, 423
MboI	GATC	2 cut(s)	256, 421
MboII	GAAGA	2 cut(s)	56, 205
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	2 cut(s)	55, 92
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	457
MnlI	CCTC	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	471
MspR9I	CCNGG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	2 cut(s)	256, 421
NlaIII	CATG	3 cut(s)	122, 373, 445
NlaIV	GGNNCC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	122
PasI	CCCWGGG	1 cut(s)	271
PciI	ACATGT	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	283, 472
PflMI	CCANNNNNTGG	1 cut(s)	107
PkrI	GCNGC	3 cut(s)	157, 225, 379
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	190
PscI	ACATGT	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SatI	GCNGC	3 cut(s)	156, 224, 378
Sau3AI	GATC	2 cut(s)	256, 421
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	3 cut(s)	181, 192, 439
SfaNI	GCATC	2 cut(s)	334, 389
Sse9I	AATT	2 cut(s)	55, 92
SsiI	CCGC	1 cut(s)	349
SspI	AATATT	1 cut(s)	365
SspMI	CTAG	2 cut(s)	23, 35
StyD4I	CCNGG	1 cut(s)	270
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	342
TasI	AATT	2 cut(s)	55, 92
TfiI	GAWTC	2 cut(s)	283, 472
TseI	GCWGC	3 cut(s)	155, 223, 377
TspDTI	ATGAA	3 cut(s)	333, 386, 458
Van91I	CCANNNNNTGG	1 cut(s)	107
XceI	RCATGY	1 cut(s)	122
XmiI	GTMKAC	2 cut(s)	291, 412
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	2 cut(s)	23, 35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.