Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018351

Physical Location & Seq

Genomic Coordinates Reverse (-)

78363530 .. 78363996

Gene Structure 467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00140060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAGCATGTCTTGGTTGGTAATTTGCATGTGAAGTGCGATGTGTACAGCTTTGGTGCTGTGCTGCTCGAACTTCTGACAGGTTTAAGGGTCCTTAATAAAGATCGTGCTGTTCCGAAACAGAATTTGGTTCAATGGGCTAAGCCACTTCTCTCTTGTAAGAGACATATGAAAACCTTCATGGTTGCACGGATAAAGGGCCAATATTCCTCAGAGAAAGCATTACAGACAGCAAAGATTACCCGAAAATGTCTAGCACGGGATCCTGAAAGTCGTCCTTCGATGACAGAAGTTGCTGATGCATTGGAACAGATTCAGGCAATGAAGGAAAAATCAAAACAAAATGAACTTACCACCACGAAATCTACTTCTAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

126

Amino Acids

14.16

Weight (kDa)

9.88

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	10 - 99	2.9e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018351)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15290
rosa_chinensis	RchiOBHm_Chr2g0104651
rosa_laevigata	RLG00000017193
rosa_multiflora	Rmu_co8326929.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140060
rosa_samantha	Rh2AG159000 Rh2BG165400 Rh2CG176200 Rh2CG176900 Rh2DG164200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	257, 270
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	134
AjuI	GAANNNNNNNTTGG	3 cut(s)	28, 110, 142
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	2 cut(s)	257, 270
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	1 cut(s)	124
Asp700I	GAANNNNTTC	2 cut(s)	176, 312
AspS9I	GGNCC	2 cut(s)	91, 199
AvaII	GGWCC	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	2 cut(s)	254, 372
BisI	GCNGC	1 cut(s)	65
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	91, 199
BmiI	GGNNCC	2 cut(s)	92, 264
BmsI	GCATC	1 cut(s)	289
Bpu1102I	GCTNAGC	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	327
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	51
BshFI	GGCC	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	103, 262
Bsp1720I	GCTNAGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	224
BspLI	GGNNCC	2 cut(s)	92, 264
BspPI	GGATC	2 cut(s)	257, 270
BsrDI	GCAATG	1 cut(s)	327
BsrGI	TGTACA	1 cut(s)	45
BssMI	GATC	2 cut(s)	103, 262
BstAUI	TGTACA	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	141, 211
BstKTI	GATC	2 cut(s)	106, 265
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	103, 262
BstNSI	RCATGY	2 cut(s)	11, 32
BstV1I	GCAGC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	91, 199
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	3 cut(s)	8, 29, 181
CviJI	RGCY	4 cut(s)	51, 140, 145, 201
CviKI_1	RGCY	4 cut(s)	51, 140, 145, 201
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	141, 211
DpnI	GATC	2 cut(s)	105, 264
DpnII	GATC	2 cut(s)	103, 262
Eco47I	GGWCC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	304
FaeI	CATG	3 cut(s)	11, 32, 184
FaiI	YATR	5 cut(s)	9, 30, 168, 170, 182
FalI	AAGNNNNNCTT	3 cut(s)	28, 262, 294
FatI	CATG	3 cut(s)	7, 28, 180
FauNDI	CATATG	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	65
FspBI	CTAG	2 cut(s)	254, 372
GluI	GCNGC	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	201
Hin1II	CATG	3 cut(s)	11, 32, 184
HinfI	GANTC	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	3 cut(s)	78, 117, 214
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	187, 288, 319
HpyCH4V	TGCA	3 cut(s)	28, 188, 302
HpyF3I	CTNAG	2 cut(s)	141, 211
Hsp92II	CATG	3 cut(s)	11, 32, 184
Kzo9I	GATC	2 cut(s)	103, 262
LpnPI	CCDG	3 cut(s)	66, 279, 302
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	2 cut(s)	254, 372
MalI	GATC	2 cut(s)	105, 264
MboI	GATC	2 cut(s)	103, 262
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	2 cut(s)	22, 124
MnlI	CCTC	1 cut(s)	220
Mph1103I	ATGCAT	1 cut(s)	304
MroXI	GAANNNNTTC	2 cut(s)	176, 312
MseI	TTAA	3 cut(s)	86, 96, 379
NdeI	CATATG	1 cut(s)	168
NdeII	GATC	2 cut(s)	103, 262
NlaIII	CATG	3 cut(s)	11, 32, 184
NlaIV	GGNNCC	2 cut(s)	92, 264
NsiI	ATGCAT	1 cut(s)	304
NspI	RCATGY	2 cut(s)	11, 32
PdmI	GAANNNNTTC	2 cut(s)	176, 312
PfeI	GAWTC	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	66
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	92, 264
PspPI	GGNCC	2 cut(s)	91, 199
PspPPI	RGGWCCY	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	86, 96, 379
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	2 cut(s)	103, 262
Sau96I	GGNCC	2 cut(s)	91, 199
SetI	ASST	3 cut(s)	53, 85, 179
SfaNI	GCATC	1 cut(s)	289
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	2 cut(s)	22, 124
SspI	AATATT	1 cut(s)	206
SspMI	CTAG	2 cut(s)	254, 372
TaqI	TCGA	2 cut(s)	69, 281
TasI	AATT	2 cut(s)	22, 124
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	3 cut(s)	86, 96, 379
Tru9I	TTAA	3 cut(s)	86, 96, 379
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	5 cut(s)	17, 169, 185, 338, 360
TspGWI	ACGGA	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	2 cut(s)	11, 32
XmnI	GAANNNNTTC	2 cut(s)	176, 312
XspI	CTAG	2 cut(s)	254, 372
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.