Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018351

Physical Location & Seq

Genomic Coordinates Forward (+)

16196433 .. 16197178

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG176900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAGAACAGGTCATTTATCTGTGAAGAGCGACGTGTACAGCTTCGGCGTGGTGCTGCTTGAAATTCTGACAGGGTTAACGTCCAACGACTTTAGCAGCCCTGAAGGACAGATTGCGCTGGTTGACTGGGCTATACCACTCCTATCTGATGAAACAAAGTTGCAAATCATGGATACGCGGATAGATGGTCAGTATTCCTCCCAGGAAGCATTACAGACAGCACAGCTTACTCTAAAATGTCTAGAAAGAGATCCGGAAAGCCGACCTTCCATGAAAGAAGTTGTGGATGAATTGGCGTGCATTCAGGCAATGAAGGAAAACCCGAACCAGTCCGAGCTTAAACCTACGCCCTCTCCTTCTAGTTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

123

Amino Acids

13.56

Weight (kDa)

4.49

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 98	4.9e-09	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	5 - 96	5.8e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018351)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15290
rosa_chinensis	RchiOBHm_Chr2g0104651
rosa_laevigata	RLG00000017193
rosa_multiflora	Rmu_co8326929.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140060
rosa_samantha	Rh2AG159000 Rh2BG165400 Rh2CG176200 Rh2CG176900 Rh2DG164200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	178
AccIII	TCCGGA	1 cut(s)	253
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	62
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	3 cut(s)	42, 226, 337
AluI	AGCT	3 cut(s)	42, 226, 337
AlwI	GGATC	1 cut(s)	245
Aor13HI	TCCGGA	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	55, 96
ApoI	RAATTY	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	42, 108
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	166
BfaI	CTAG	2 cut(s)	242, 360
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	56, 97
BlsI	GCNGC	2 cut(s)	57, 98
Bme1390I	CCNGG	1 cut(s)	203
BmgBI	CACGTC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	203
BmrI	ACTGGG	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bse1I	ACTGG	2 cut(s)	131, 328
Bse3DI	GCAATG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	131, 328
BseXI	GCAGC	2 cut(s)	42, 108
Bsh1236I	CGCG	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	300
Bsp13I	TCCGGA	1 cut(s)	253
Bsp1407I	TGTACA	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	178
BspEI	TCCGGA	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	178
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	131, 328
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	42, 108
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuI	GTATCC	1 cut(s)	166
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	298
CfoI	GCGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	2 cut(s)	169, 271
CviJI	RGCY	6 cut(s)	42, 99, 131, 226, 261, 337
CviKI_1	RGCY	6 cut(s)	42, 99, 131, 226, 261, 337
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	172, 274
FaiI	YATR	3 cut(s)	134, 170, 272
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FatI	CATG	2 cut(s)	168, 270
Fnu4HI	GCNGC	2 cut(s)	56, 97
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	2 cut(s)	56, 97
FspBI	CTAG	2 cut(s)	242, 360
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	2 cut(s)	56, 97
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	172, 274
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HincII	GTYRAC	2 cut(s)	78, 124
HindII	GTYRAC	2 cut(s)	78, 124
HpaI	GTTAAC	1 cut(s)	78
HpaII	CCGG	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	37, 78, 124
Hpy188I	TCNGA	3 cut(s)	69, 148, 334
Hpy188III	TCNNGA	2 cut(s)	242, 254
Hpy8I	GTNNAC	3 cut(s)	37, 78, 124
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	4 cut(s)	98, 276, 307, 366
HpyCH4IV	ACGT	2 cut(s)	33, 80
HpyCH4V	TGCA	2 cut(s)	163, 300
HpySE526I	ACGT	2 cut(s)	33, 80
Hsp92II	CATG	2 cut(s)	172, 274
HspAI	GCGC	1 cut(s)	116
Kpn2I	TCCGGA	1 cut(s)	253
KspAI	GTTAAC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	250
LguI	GCTCTTC	1 cut(s)	20
LpnPI	CCDG	9 cut(s)	57, 104, 112, 114, 188, 215, 267, 290, 341
Lsp1109I	GCAGC	2 cut(s)	42, 108
MaeI	CTAG	2 cut(s)	242, 360
MaeII	ACGT	2 cut(s)	33, 80
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	1 cut(s)	37
MflI	RGATCY	1 cut(s)	250
MluCI	AATT	2 cut(s)	63, 290
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	2 cut(s)	208, 361
MroI	TCCGGA	1 cut(s)	253
MseI	TTAA	2 cut(s)	77, 339
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	178
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	172, 274
PciSI	GCTCTTC	1 cut(s)	20
PctI	GAATGC	1 cut(s)	300
PkrI	GCNGC	2 cut(s)	57, 98
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SapI	GCTCTTC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	77, 339
SatI	GCNGC	2 cut(s)	56, 97
Sau3AI	GATC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	8 cut(s)	13, 36, 44, 83, 228, 268, 339, 346
Sse9I	AATT	2 cut(s)	63, 290
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	2 cut(s)	242, 360
StyD4I	CCNGG	1 cut(s)	201
TaiI	ACGT	2 cut(s)	36, 83
TasI	AATT	2 cut(s)	63, 290
TatI	WGTACW	1 cut(s)	36
Tru1I	TTAA	2 cut(s)	77, 339
Tru9I	TTAA	2 cut(s)	77, 339
TseI	GCWGC	2 cut(s)	55, 96
TspDTI	ATGAA	4 cut(s)	165, 287, 303, 326
XapI	RAATTY	1 cut(s)	63
XbaI	TCTAGA	1 cut(s)	241
XspI	CTAG	2 cut(s)	242, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.