Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0018351

Physical Location & Seq

Genomic Coordinates Forward (+)

14556710 .. 14559715

Gene Structure 3006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG165400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGTTTTGGTAGGGGAGTTTCTAGGCGGGGCTGCTCTCGGAGCAGCATTCGGGGTGCTGTTCGATGTGGTTAAGGAAGTGATATCGCTTGATAAGTCTACGACCTTTAATTCCATCCTCAAGAACATCAAATCCACTCTAGACTTTTTTAAACCGGTGATCGAAAATATAGCAGAGCAGAACATGGAATTGGGTCTCCCGGAGGAGGAGATAAAGTCTCTCATAGAACAAATGGAGGAGGGCGTAGAGCTCAATCGTAGGTCATCAAAAGTTAGAGTCAGGGATGTGAAGGAGACTCCGGTTTTGGCAAGGAAAAACGGTGACCAACTTGTTGAGTCGGCGAGGGATGGGAAGGAGACCTTGGCTTTGGCAAGGAAAATAAACATGAATTTTCGGCCAGACGGATTACTTGGTGAGGGAGGCTTTGGAAAGGTTTTCAAGGGTTGGGTGGATGAGGAAACACTTTTACCTTCAAGTGTTGACACCGGAATTATCATTGCTATCAAGAAATATAACCCAGAATGCTTCCAAGGCCTTCAACAGTGGCAGGTCAAATCCTCTAATATATTGCTTGATGAGAATTACAATGTAAAACTCTCAGATTTTGGCTTCGCAATATTGGGGCCAACTGATGGAGAATCATATATAGAGACTGAAATTATCGGCACATTTGGTTATGCTGCTCCAAAATATGTTGCAACAGGTCATTTGCATGTGAAGAGCGATGTGTATAGCTTTGGTGCGGTGCTGCTCGAACTTCTGACAGGTTTAAGGGTCATTGATAAAGATCGTTCTGTTCCGAAACAGAATTTGGTTCAATGGGCTAAGCCACTTCTCTCTTGTAAGAAACATATGAAAACCTTCATGGATGCACGGATAAAGGGCCAATATTCCTCAGAGGAAGCATTACAGACAGCAAAGCTTACCCGAAAATGTCTAGCACGGGATCCTGAAAGTCGTCCTTCGATGACAGAAGTTGCTGATGGATTGGAACAGATTCGGGCAATGAAGGAAAAATCAAAACAAAATGAACTTACCACCACGAAATCTACTTCTAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

354

Amino Acids

39.26

Weight (kDa)

6.1

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 104	4.2e-17	Arabidopsis broad-spectrum mildew resistance protein RPW8
Pkinase	PF00069	184 - 327	3e-20	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	185 - 328	6.3e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018351)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15290
rosa_chinensis	RchiOBHm_Chr2g0104651
rosa_laevigata	RLG00000017193
rosa_multiflora	Rmu_co8326929.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140060
rosa_samantha	Rh2AG159000 Rh2BG165400 Rh2CG176200 Rh2CG176900 Rh2DG164200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	538
AccB7I	CCANNNNNTGG	1 cut(s)	632
AccI	GTMKAC	1 cut(s)	98
AciI	CCGC	2 cut(s)	27, 743
AclWI	GGATC	2 cut(s)	941, 954
AcoI	YGGCCR	1 cut(s)	395
AcsI	RAATTY	2 cut(s)	388, 808
AfiI	CCNNNNNNNGG	2 cut(s)	205, 632
AgeI	ACCGGT	1 cut(s)	154
AgsI	TTSAA	4 cut(s)	439, 474, 539, 818
AjuI	GAANNNNNNNTTGG	6 cut(s)	173, 205, 344, 376, 794, 826
AloI	GAACNNNNNNTCC	2 cut(s)	116, 148
AluBI	AGCT	3 cut(s)	250, 735, 922
AluI	AGCT	3 cut(s)	250, 735, 922
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	5 cut(s)	200, 222, 287, 350, 644
AlwI	GGATC	2 cut(s)	941, 954
AoxI	GGCC	4 cut(s)	395, 532, 623, 883
ApeKI	GCWGC	4 cut(s)	32, 44, 680, 748
ApoI	RAATTY	2 cut(s)	388, 808
ArsI	GACNNNNNNTTYG	4 cut(s)	286, 318, 349, 381
AsiGI	ACCGGT	1 cut(s)	154
Asp700I	GAANNNNTTC	2 cut(s)	860, 996
AspS9I	GGNCC	2 cut(s)	623, 883
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	169, 332, 425
BamHI	GGATCC	1 cut(s)	946
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	19, 56, 667, 735
BccI	CCATC	4 cut(s)	122, 341, 626, 977
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	5 cut(s)	200, 222, 287, 350, 644
BfaI	CTAG	4 cut(s)	23, 140, 938, 1056
BfuAI	ACCTGC	1 cut(s)	538
BisI	GCNGC	4 cut(s)	33, 45, 681, 749
BlpI	GCTNAGC	1 cut(s)	825
BlsI	GCNGC	4 cut(s)	34, 46, 682, 750
Bme1390I	CCNGG	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	623, 883
BmiI	GGNNCC	2 cut(s)	624, 948
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	859
Bpu1102I	GCTNAGC	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	786
BsaI	GGTCTC	2 cut(s)	200, 350
BsaJI	CCNNGG	2 cut(s)	360, 529
BsaWI	WCCGGW	3 cut(s)	154, 298, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 632
Bse118I	RCCGGY	1 cut(s)	154
Bse3DI	GCAATG	2 cut(s)	495, 1011
Bse8I	GATNNNNATC	1 cut(s)	786
BseDI	CCNNGG	2 cut(s)	360, 529
BseGI	GGATG	5 cut(s)	114, 289, 352, 457, 874
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	2 cut(s)	205, 632
BseMI	GCAATG	2 cut(s)	495, 1011
BseMII	CTCAG	2 cut(s)	612, 909
BseRI	GAGGAG	3 cut(s)	218, 221, 251
BseXI	GCAGC	4 cut(s)	19, 56, 667, 735
BshFI	GGCC	4 cut(s)	397, 534, 625, 885
BshTI	ACCGGT	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	4 cut(s)	155, 200, 299, 486
BslI	CCNNNNNNNGG	2 cut(s)	205, 632
BsmAI	GTCTC	5 cut(s)	200, 222, 287, 350, 644
BsmI	GAATGC	2 cut(s)	47, 527
BsnI	GGCC	4 cut(s)	397, 534, 625, 885
Bso31I	GGTCTC	2 cut(s)	200, 350
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	159, 787, 946
Bsp1720I	GCTNAGC	1 cut(s)	825
BspACI	CCGC	2 cut(s)	27, 743
BspANI	GGCC	4 cut(s)	397, 534, 625, 885
BspCNI	CTCAG	2 cut(s)	611, 908
BspLI	GGNNCC	2 cut(s)	624, 948
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	2 cut(s)	941, 954
BspQI	GCTCTTC	1 cut(s)	713
BspTNI	GGTCTC	2 cut(s)	200, 350
BsrDI	GCAATG	2 cut(s)	495, 1011
BsrFI	RCCGGY	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	360, 529
BssMI	GATC	3 cut(s)	159, 787, 946
BssT1I	CCWWGG	2 cut(s)	360, 529
Bst4CI	ACNGT	2 cut(s)	320, 543
Bst6I	CTCTTC	1 cut(s)	713
BstDEI	CTNAG	3 cut(s)	598, 825, 895
BstEII	GGTNACC	1 cut(s)	320
BstF5I	GGATG	5 cut(s)	114, 289, 352, 457, 874
BstKTI	GATC	3 cut(s)	162, 790, 949
BstMAI	GTCTC	5 cut(s)	200, 222, 287, 350, 644
BstMBI	GATC	3 cut(s)	159, 787, 946
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 531
BstNSI	RCATGY	1 cut(s)	716
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	4 cut(s)	19, 56, 667, 735
BstX2I	RGATCY	1 cut(s)	946
BstYI	RGATCY	1 cut(s)	946
BsuRI	GGCC	4 cut(s)	397, 534, 625, 885
BtgZI	GCGATG	1 cut(s)	738
BtsCI	GGATG	5 cut(s)	114, 289, 352, 457, 874
BtsIMutI	CAGTG	1 cut(s)	548
BveI	ACCTGC	1 cut(s)	538
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	623, 883
CspAI	ACCGGT	1 cut(s)	154
CviAII	CATG	4 cut(s)	184, 385, 713, 865
DdeI	CTNAG	3 cut(s)	598, 825, 895
DpnI	GATC	3 cut(s)	161, 789, 948
DpnII	GATC	3 cut(s)	159, 787, 946
DraI	TTTAAA	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	395
Eam1104I	CTCTTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	713
Ecl136II	GAGCTC	1 cut(s)	250
Eco130I	CCWWGG	2 cut(s)	360, 529
Eco147I	AGGCCT	1 cut(s)	534
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	2 cut(s)	200, 350
Eco32I	GATATC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	250
Eco91I	GGTNACC	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	250
EcoO65I	GGTNACC	1 cut(s)	320
EcoRV	GATATC	1 cut(s)	84
EcoT14I	CCWWGG	2 cut(s)	360, 529
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	2 cut(s)	360, 529
FaeI	CATG	4 cut(s)	187, 388, 716, 868
FalI	AAGNNNNNCTT	4 cut(s)	344, 376, 946, 978
FatI	CATG	4 cut(s)	183, 384, 712, 864
FauI	CCCGC	1 cut(s)	20
FauNDI	CATATG	1 cut(s)	852
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	4 cut(s)	33, 45, 681, 749
FokI	GGATG	5 cut(s)	101, 296, 359, 464, 881
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	4 cut(s)	33, 45, 681, 749
FspBI	CTAG	4 cut(s)	23, 140, 938, 1056
GluI	GCNGC	4 cut(s)	33, 45, 681, 749
HaeIII	GGCC	4 cut(s)	397, 534, 625, 885
HapII	CCGG	4 cut(s)	155, 200, 299, 486
Hin1II	CATG	4 cut(s)	187, 388, 716, 868
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	5 cut(s)	276, 295, 335, 638, 997
HpaII	CCGG	4 cut(s)	155, 200, 299, 486
HphI	GGTGA	3 cut(s)	169, 332, 425
Hpy166II	GTNNAC	2 cut(s)	99, 481
Hpy188I	TCNGA	5 cut(s)	41, 601, 762, 801, 898
Hpy188III	TCNNGA	4 cut(s)	121, 140, 505, 950
Hpy8I	GTNNAC	2 cut(s)	99, 481
HpyAV	CCTTC	7 cut(s)	283, 346, 480, 545, 871, 972, 1003
HpyCH4III	ACNGT	2 cut(s)	320, 543
HpyCH4V	TGCA	3 cut(s)	698, 712, 872
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 531
HpyF3I	CTNAG	3 cut(s)	598, 825, 895
Hsp92II	CATG	4 cut(s)	187, 388, 716, 868
Kzo9I	GATC	3 cut(s)	159, 787, 946
LguI	GCTCTTC	1 cut(s)	713
LmnI	GCTCC	2 cut(s)	41, 688
Lsp1109I	GCAGC	4 cut(s)	19, 56, 667, 735
LweI	GCATC	1 cut(s)	859
MaeI	CTAG	4 cut(s)	23, 140, 938, 1056
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	3 cut(s)	161, 789, 948
MboI	GATC	3 cut(s)	159, 787, 946
MboII	GAAGA	1 cut(s)	730
MflI	RGATCY	1 cut(s)	946
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	7 cut(s)	109, 188, 388, 489, 580, 657, 808
MlyI	GAGTC	3 cut(s)	285, 289, 344
MroXI	GAANNNNTTC	2 cut(s)	860, 996
MseI	TTAA	5 cut(s)	72, 108, 150, 770, 1063
MslI	CAYNNNNRTG	1 cut(s)	711
MspI	CCGG	4 cut(s)	155, 200, 299, 486
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	2 cut(s)	47, 527
MwoI	GCNNNNNNNGC	2 cut(s)	41, 531
NciI	CCSGG	1 cut(s)	200
NdeI	CATATG	1 cut(s)	852
NdeII	GATC	3 cut(s)	159, 787, 946
NlaIII	CATG	4 cut(s)	187, 388, 716, 868
NlaIV	GGNNCC	2 cut(s)	624, 948
NmuCI	GTSAC	1 cut(s)	320
NspI	RCATGY	1 cut(s)	716
PceI	AGGCCT	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	713
PctI	GAATGC	2 cut(s)	47, 527
PdmI	GAANNNNTTC	2 cut(s)	860, 996
PfeI	GAWTC	2 cut(s)	638, 997
PflMI	CCANNNNNTGG	1 cut(s)	632
PfoI	TCCNGGA	1 cut(s)	198
PinAI	ACCGGT	1 cut(s)	154
PkrI	GCNGC	4 cut(s)	34, 46, 682, 750
PleI	GAGTC	3 cut(s)	284, 289, 343
PpsI	GAGTC	3 cut(s)	284, 289, 343
Psp124BI	GAGCTC	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	320
PspN4I	GGNNCC	2 cut(s)	624, 948
PspPI	GGNCC	2 cut(s)	623, 883
PsuI	RGATCY	1 cut(s)	946
RseI	CAYNNNNRTG	1 cut(s)	711
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	713
SaqAI	TTAA	5 cut(s)	72, 108, 150, 770, 1063
SatI	GCNGC	4 cut(s)	33, 45, 681, 749
Sau3AI	GATC	3 cut(s)	159, 787, 946
Sau96I	GGNCC	2 cut(s)	623, 883
SchI	GAGTC	3 cut(s)	285, 289, 344
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	859
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	7 cut(s)	109, 188, 388, 489, 580, 657, 808
SseBI	AGGCCT	1 cut(s)	534
SsiI	CCGC	2 cut(s)	27, 743
SspI	AATATT	2 cut(s)	618, 890
SspMI	CTAG	4 cut(s)	23, 140, 938, 1056
SstI	GAGCTC	1 cut(s)	252
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	2 cut(s)	360, 529
TaaI	ACNGT	2 cut(s)	320, 543
TaqI	TCGA	4 cut(s)	63, 162, 753, 965
TasI	AATT	7 cut(s)	109, 188, 388, 489, 580, 657, 808
TfiI	GAWTC	2 cut(s)	638, 997
Tru1I	TTAA	5 cut(s)	72, 108, 150, 770, 1063
Tru9I	TTAA	5 cut(s)	72, 108, 150, 770, 1063
TscAI	CASTG	1 cut(s)	548
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	4 cut(s)	32, 44, 680, 748
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	5 cut(s)	401, 853, 869, 1022, 1044
TspGWI	ACGGA	2 cut(s)	417, 889
TspRI	CASTG	1 cut(s)	548
Van91I	CCANNNNNTGG	1 cut(s)	632
XapI	RAATTY	2 cut(s)	388, 808
XbaI	TCTAGA	1 cut(s)	139
XceI	RCATGY	1 cut(s)	716
XmiI	GTMKAC	1 cut(s)	98
XmnI	GAANNNNTTC	2 cut(s)	860, 996
XspI	CTAG	4 cut(s)	23, 140, 938, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.