Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018351

Physical Location & Seq

Genomic Coordinates Forward (+)

14272150 .. 14275155

Gene Structure 3006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG164200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTTTTGGTAGGGGAGTTTCTAGGCGGGGCTGCTCTCGGAGCAGCATTCGGGGTGCTGTTCGATGTGGTTAAGGAAGTGATATCGCTTGATAAGTCTACGACCTTTAATTCCATCCTCAAGAACATCAAATCCACTCTAGACTTTTTTAAACCGGTGATCGAAAATATAGCAGAGCAGAACATGGAATTGGGTCTCCCGGAGGAGGAGATAAAGTCTCTCATAGAACAAATGGAGGAGGGCGTAGAGCTCAATCGTAGGTCATCAAAAGTCAAATCCTCTAATATATTGCTTGATGAGAATTACAATGTAAAACTCTCAGATTTTGGCTTCGCAATATTGGGGCCAACTGATGGAGAATCATATATAGAGACTGAAATTATCGGCACATTTGGTTATGCTGCTCCAAAATATGTTGCAACAGGTCATTTGCATGTGAAGAGCGATGTGTATAGCTTTGGTGCGGTGCTGCTCGAACTTCTGACAGGTTTAAGGGTCATTGATAAAGATCGTTCTGTTCCGAAACAGAATTTGGTTCAATGGGCTAAGCCACTTCTCTCTTGTAAGAAACATATGAAAACCTTCATGGATGCACGGATAAAGGGCCAATATTCCTCAGAGGAAGCATTACAGACAGCAAAGCTTACCCGAAAATGTCTAGCACGGGATCCTGAAAGTCGTCCTTCGATGACAGAAGTTGCTGATGGATTGGAACAGATTCGGGCAATGAAGGAAAAATCAAAACAAAATGAACTTACCACCACGAAATCTACTTCTAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

261

Amino Acids

28.89

Weight (kDa)

5.8

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 108	7.4e-18	Arabidopsis broad-spectrum mildew resistance protein RPW8
Pkinase	PF00069	65 - 234	1e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	92 - 235	3.1e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0018351)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15290
rosa_chinensis	RchiOBHm_Chr2g0104651
rosa_laevigata	RLG00000017193
rosa_multiflora	Rmu_co8326929.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140060
rosa_samantha	Rh2AG159000 Rh2BG165400 Rh2CG176200 Rh2CG176900 Rh2DG164200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	98
AciI	CCGC	2 cut(s)	27, 464
AclWI	GGATC	2 cut(s)	662, 675
AcsI	RAATTY	1 cut(s)	529
AfiI	CCNNNNNNNGG	2 cut(s)	205, 353
AgeI	ACCGGT	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	539
AjuI	GAANNNNNNNTTGG	4 cut(s)	173, 205, 515, 547
AloI	GAACNNNNNNTCC	2 cut(s)	116, 148
AluBI	AGCT	3 cut(s)	250, 456, 643
AluI	AGCT	3 cut(s)	250, 456, 643
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	3 cut(s)	200, 222, 365
AlwI	GGATC	2 cut(s)	662, 675
AoxI	GGCC	2 cut(s)	344, 604
ApeKI	GCWGC	4 cut(s)	32, 44, 401, 469
ApoI	RAATTY	1 cut(s)	529
AsiGI	ACCGGT	1 cut(s)	154
Asp700I	GAANNNNTTC	2 cut(s)	581, 717
AspS9I	GGNCC	2 cut(s)	344, 604
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	667
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	19, 56, 388, 456
BccI	CCATC	3 cut(s)	122, 347, 698
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	3 cut(s)	200, 222, 365
BfaI	CTAG	4 cut(s)	23, 140, 659, 777
BisI	GCNGC	4 cut(s)	33, 45, 402, 470
BlpI	GCTNAGC	1 cut(s)	546
BlsI	GCNGC	4 cut(s)	34, 46, 403, 471
Bme1390I	CCNGG	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	344, 604
BmiI	GGNNCC	2 cut(s)	345, 669
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	580
Bpu1102I	GCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 353
Bse118I	RCCGGY	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	732
Bse8I	GATNNNNATC	1 cut(s)	507
BseGI	GGATG	2 cut(s)	114, 595
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	2 cut(s)	205, 353
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	2 cut(s)	333, 630
BseRI	GAGGAG	3 cut(s)	218, 221, 251
BseXI	GCAGC	4 cut(s)	19, 56, 388, 456
BshFI	GGCC	2 cut(s)	346, 606
BshTI	ACCGGT	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	155, 200
BslI	CCNNNNNNNGG	2 cut(s)	205, 353
BsmAI	GTCTC	3 cut(s)	200, 222, 365
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	2 cut(s)	346, 606
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	159, 508, 667
Bsp1720I	GCTNAGC	1 cut(s)	546
BspACI	CCGC	2 cut(s)	27, 464
BspANI	GGCC	2 cut(s)	346, 606
BspCNI	CTCAG	2 cut(s)	332, 629
BspLI	GGNNCC	2 cut(s)	345, 669
BspPI	GGATC	2 cut(s)	662, 675
BspQI	GCTCTTC	1 cut(s)	434
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	732
BsrFI	RCCGGY	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	154
BssMI	GATC	3 cut(s)	159, 508, 667
Bst6I	CTCTTC	1 cut(s)	434
BstDEI	CTNAG	3 cut(s)	319, 546, 616
BstF5I	GGATG	2 cut(s)	114, 595
BstKTI	GATC	3 cut(s)	162, 511, 670
BstMAI	GTCTC	3 cut(s)	200, 222, 365
BstMBI	GATC	3 cut(s)	159, 508, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	4 cut(s)	19, 56, 388, 456
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
BsuRI	GGCC	2 cut(s)	346, 606
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	2 cut(s)	114, 595
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	344, 604
CspAI	ACCGGT	1 cut(s)	154
CviAII	CATG	3 cut(s)	184, 434, 586
CviJI	RGCY	9 cut(s)	32, 250, 330, 346, 456, 545, 550, 606, 643
CviKI_1	RGCY	9 cut(s)	32, 250, 330, 346, 456, 545, 550, 606, 643
DdeI	CTNAG	3 cut(s)	319, 546, 616
DpnI	GATC	3 cut(s)	161, 510, 669
DpnII	GATC	3 cut(s)	159, 508, 667
DraI	TTTAAA	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	3 cut(s)	187, 437, 589
FalI	AAGNNNNNCTT	2 cut(s)	667, 699
FatI	CATG	3 cut(s)	183, 433, 585
FauI	CCCGC	1 cut(s)	20
FauNDI	CATATG	1 cut(s)	573
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	4 cut(s)	33, 45, 402, 470
FokI	GGATG	2 cut(s)	101, 602
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	4 cut(s)	33, 45, 402, 470
FspBI	CTAG	4 cut(s)	23, 140, 659, 777
GluI	GCNGC	4 cut(s)	33, 45, 402, 470
HaeIII	GGCC	2 cut(s)	346, 606
HapII	CCGG	2 cut(s)	155, 200
Hin1II	CATG	3 cut(s)	187, 437, 589
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	2 cut(s)	359, 718
HpaII	CCGG	2 cut(s)	155, 200
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	5 cut(s)	41, 322, 483, 522, 619
Hpy188III	TCNNGA	3 cut(s)	121, 140, 671
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	3 cut(s)	592, 693, 724
HpyCH4V	TGCA	3 cut(s)	419, 433, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	3 cut(s)	319, 546, 616
Hsp92II	CATG	3 cut(s)	187, 437, 589
Kzo9I	GATC	3 cut(s)	159, 508, 667
LguI	GCTCTTC	1 cut(s)	434
LmnI	GCTCC	2 cut(s)	41, 409
LpnPI	CCDG	5 cut(s)	168, 213, 408, 471, 684
Lsp1109I	GCAGC	4 cut(s)	19, 56, 388, 456
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	4 cut(s)	23, 140, 659, 777
MalI	GATC	3 cut(s)	161, 510, 669
MboI	GATC	3 cut(s)	159, 508, 667
MboII	GAAGA	1 cut(s)	451
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	5 cut(s)	109, 188, 301, 378, 529
MnlI	CCTC	8 cut(s)	128, 196, 199, 229, 232, 289, 613, 625
MroXI	GAANNNNTTC	2 cut(s)	581, 717
MseI	TTAA	5 cut(s)	72, 108, 150, 491, 784
MslI	CAYNNNNRTG	1 cut(s)	432
MspI	CCGG	2 cut(s)	155, 200
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	200
NdeI	CATATG	1 cut(s)	573
NdeII	GATC	3 cut(s)	159, 508, 667
NlaIII	CATG	3 cut(s)	187, 437, 589
NlaIV	GGNNCC	2 cut(s)	345, 669
NspI	RCATGY	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	434
PctI	GAATGC	1 cut(s)	47
PdmI	GAANNNNTTC	2 cut(s)	581, 717
PfeI	GAWTC	2 cut(s)	359, 718
PflMI	CCANNNNNTGG	1 cut(s)	353
PfoI	TCCNGGA	1 cut(s)	198
PinAI	ACCGGT	1 cut(s)	154
PkrI	GCNGC	4 cut(s)	34, 46, 403, 471
Psp124BI	GAGCTC	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	345, 669
PspPI	GGNCC	2 cut(s)	344, 604
PsuI	RGATCY	1 cut(s)	667
RseI	CAYNNNNRTG	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	434
SaqAI	TTAA	5 cut(s)	72, 108, 150, 491, 784
SatI	GCNGC	4 cut(s)	33, 45, 402, 470
Sau3AI	GATC	3 cut(s)	159, 508, 667
Sau96I	GGNCC	2 cut(s)	344, 604
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	107, 252, 263, 427, 458, 490, 584, 645
SfaNI	GCATC	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	5 cut(s)	109, 188, 301, 378, 529
SsiI	CCGC	2 cut(s)	27, 464
SspI	AATATT	2 cut(s)	339, 611
SspMI	CTAG	4 cut(s)	23, 140, 659, 777
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	198
TaqI	TCGA	4 cut(s)	63, 162, 474, 686
TasI	AATT	5 cut(s)	109, 188, 301, 378, 529
TfiI	GAWTC	2 cut(s)	359, 718
Tru1I	TTAA	5 cut(s)	72, 108, 150, 491, 784
Tru9I	TTAA	5 cut(s)	72, 108, 150, 491, 784
TseI	GCWGC	4 cut(s)	32, 44, 401, 469
TspDTI	ATGAA	4 cut(s)	574, 590, 743, 765
TspGWI	ACGGA	1 cut(s)	610
Van91I	CCANNNNNTGG	1 cut(s)	353
XapI	RAATTY	1 cut(s)	529
XbaI	TCTAGA	1 cut(s)	139
XceI	RCATGY	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	98
XmnI	GAANNNNTTC	2 cut(s)	581, 717
XspI	CTAG	4 cut(s)	23, 140, 659, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.