Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8326929.1

Orthogroup ID

OG0018351

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 408

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8326929.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

gtgtatggtttcggtgttgtgctgcttgaaattctgacagggttacgagcactcgatacaaaacgccctaaggagcaacttaatctggtggactgggctaaaccacttcttcctcatcgaagaaagttaaaaacgattatggatgcaaggatggagggccaatattccttcaaggcagcattacagacagcaaatattactctaaaatgcctggcgccagatcctaaaagccggccttccatgaaagaagtcttggaagaactggaacaggttcaggcaatcagagaaaaaccaaagccatcattactaattacctctaggcaaactacttctattactcgatcctatgtacttcaagagcctattcgtcgttccccgcttcactctaggtaccaagccactacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

135

Amino Acids

15.45

Weight (kDa)

10.05

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018351)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15290
rosa_chinensis	RchiOBHm_Chr2g0104651
rosa_laevigata	RLG00000017193
rosa_multiflora	Rmu_co8326929.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140060
rosa_samantha	Rh2AG159000 Rh2BG165400 Rh2CG176200 Rh2CG176900 Rh2DG164200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	390
AccB1I	GGYRCC	2 cut(s)	214, 390
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	2 cut(s)	215, 336
AcsI	RAATTY	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	2 cut(s)	351, 392
AgsI	TTSAA	3 cut(s)	29, 172, 356
AjnI	CCWGG	1 cut(s)	210
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
Alw21I	GWGCWC	1 cut(s)	52
AlwI	GGATC	2 cut(s)	215, 336
AoxI	GGCC	2 cut(s)	157, 233
ApeKI	GCWGC	2 cut(s)	22, 176
ApoI	RAATTY	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	270
Asp718I	GGTACC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	157
AxyI	CCTNAGG	1 cut(s)	69
BanI	GGYRCC	2 cut(s)	214, 390
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	9, 188
BccI	CCATC	2 cut(s)	145, 307
BciT130I	CCWGG	1 cut(s)	212
BfaI	CTAG	2 cut(s)	318, 387
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	2 cut(s)	23, 177
BlsI	GCNGC	2 cut(s)	24, 178
Bme1390I	CCNGG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	216, 392
BmrFI	CCNGG	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	133
BmuI	ACTGGG	1 cut(s)	103
BsaHI	GRCGYC	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	2 cut(s)	98, 267
Bse21I	CCTNAGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	212
BseGI	GGATG	2 cut(s)	148, 156
BseNI	ACTGG	2 cut(s)	98, 267
BseXI	GCAGC	2 cut(s)	9, 188
BshFI	GGCC	2 cut(s)	159, 235
BshNI	GGYRCC	2 cut(s)	214, 390
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	232
BsnI	GGCC	2 cut(s)	159, 235
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	2 cut(s)	220, 341
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	2 cut(s)	159, 235
BspLI	GGNNCC	2 cut(s)	216, 392
BspPI	GGATC	2 cut(s)	215, 336
BspT107I	GGYRCC	2 cut(s)	214, 390
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	98, 267
BssAI	RCCGGY	1 cut(s)	231
BssMI	GATC	2 cut(s)	220, 341
BssNI	GRCGYC	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	148, 156
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	2 cut(s)	223, 344
BstMBI	GATC	2 cut(s)	220, 341
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	9, 188
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	159, 235
BtsCI	GGATG	2 cut(s)	148, 156
Cac8I	GCNNGC	1 cut(s)	233
CfoI	GCGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	350, 391
CviAII	CATG	2 cut(s)	241, 405
CviJI	RGCY	7 cut(s)	98, 159, 231, 235, 298, 361, 398
CviKI_1	RGCY	7 cut(s)	98, 159, 231, 235, 298, 361, 398
CviQI	GTAC	2 cut(s)	350, 391
DdeI	CTNAG	1 cut(s)	69
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	2 cut(s)	222, 343
DpnII	GATC	2 cut(s)	220, 341
Eco81I	CCTNAGG	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	210
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
FaeI	CATG	2 cut(s)	244, 408
FaiI	YATR	5 cut(s)	6, 140, 242, 348, 406
FalI	AAGNNNNNCTT	2 cut(s)	220, 252
FatI	CATG	2 cut(s)	240, 404
FauI	CCCGC	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	23, 177
FokI	GGATG	2 cut(s)	155, 163
Fsp4HI	GCNGC	2 cut(s)	23, 177
FspBI	CTAG	2 cut(s)	318, 387
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	2 cut(s)	23, 177
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	159, 235
HapII	CCGG	1 cut(s)	232
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	244, 408
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	36, 284
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	2 cut(s)	178, 246
HpyCH4V	TGCA	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	244, 408
HspAI	GCGC	1 cut(s)	215
KasI	GGCGCC	1 cut(s)	214
KpnI	GGTACC	1 cut(s)	394
KroI	GCCGGC	1 cut(s)	231
KroNI	GCCGGC	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	220, 341
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	2 cut(s)	9, 188
LweI	GCATC	1 cut(s)	133
MaeI	CTAG	2 cut(s)	318, 387
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	2 cut(s)	222, 343
MboI	GATC	2 cut(s)	220, 341
MboII	GAAGA	3 cut(s)	101, 132, 269
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	2 cut(s)	30, 309
Mly113I	GGCGCC	1 cut(s)	215
MnlI	CCTC	3 cut(s)	123, 148, 325
MroNI	GCCGGC	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	2 cut(s)	81, 128
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
NaeI	GCCGGC	1 cut(s)	233
NarI	GGCGCC	1 cut(s)	215
NdeII	GATC	2 cut(s)	220, 341
NgoMIV	GCCGGC	1 cut(s)	231
NlaIII	CATG	2 cut(s)	244, 408
NlaIV	GGNNCC	2 cut(s)	216, 392
PdiI	GCCGGC	1 cut(s)	233
PdmI	GAANNNNTTC	1 cut(s)	270
PkrI	GCNGC	2 cut(s)	24, 178
PluTI	GGCGCC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	216, 392
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	351, 392
RsaNI	GTAC	2 cut(s)	350, 391
SaqAI	TTAA	2 cut(s)	81, 128
SatI	GCNGC	2 cut(s)	23, 177
Sau3AI	GATC	2 cut(s)	220, 341
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	3 cut(s)	273, 317, 392
SfaNI	GCATC	1 cut(s)	133
SfoI	GGCGCC	1 cut(s)	216
Sse9I	AATT	2 cut(s)	30, 309
SsiI	CCGC	1 cut(s)	377
SspDI	GGCGCC	1 cut(s)	214
SspI	AATATT	2 cut(s)	164, 196
SspMI	CTAG	2 cut(s)	318, 387
StyD4I	CCNGG	1 cut(s)	210
TaqI	TCGA	3 cut(s)	54, 118, 340
TasI	AATT	2 cut(s)	30, 309
TatI	WGTACW	1 cut(s)	349
Tru1I	TTAA	2 cut(s)	81, 128
Tru9I	TTAA	2 cut(s)	81, 128
TseI	GCWGC	2 cut(s)	22, 176
TspDTI	ATGAA	1 cut(s)	257
XapI	RAATTY	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	2 cut(s)	318, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.