FvH4_1g16050

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012887
Physical Location & Seq
Reverse (-)
9130793 .. 9132218
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16050.t1

Sequence Viewer

Length: 510 bp
ATGTCTGAACCTCACGCTCTGCCACCTCATCCACCGTCTCCTCCCCCTTCTTCCTCCATGGCCATGATCATGCCTCCGAACCCTCTCTTCAAGCAGAAGTCTTGGTCCCCGGACGCCTACCGCGACGAGGCGTGGCACCGCCGCAAAAGCAACAGCAGGAAGCAAAAGCAGCGGAGCAAGAGCGTCACCGACGAAGACCTTGATGAGTTGAAAGCGTGTATTGAGTTGGGGTTCGGGTTTGAGCCGCCGGAGGAGGAGGAGAGTGCCGACCAACGACTCTCCGATACTCTTCCCGCTTTGGGACTCTACTACGCCGTCAACAGAAGCTACAAGTCTTCCACCACTCCGACGTCGTCGTTCTCCCCGACACCGTCGGAATGCGACTCCCACTCCCCCATCGGCAGCCCCCACACCATATTTGGTCCCGGGGATAATCCACAGACGGTGAAGGCAAGGTTGAAGCAGTGGGCGCAGGTGGTTGCTTGCACGGTGAGGCAGAGTTCGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

170

Amino Acids

18.75

Weight (kDa)

6.51

Isoelectric Point (pI)

92.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 62 - 121 3.7e-26 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50350 AT3G50350
fragaria_vesca FvH4_1g16050
malus_domestica MD02G1171900.v1.1 MD15G1283800.v1.1
prunus_persica Prupe.7G133400_v2.0.a1
pyrus_communis pycom02g13860 pycom15g24680
rosa_chinensis RchiOBHm_Chr2g0105661
rosa_laevigata RLG00000017447
rosa_multiflora Rmu_sc0001051.1_g000050
rosa_roxburghii Rroxscaffold_2G00138010
rosa_rugosa Rorug02G0129100
rosa_samantha Rh2AG180700 Rh2BG189600 Rh2CG184900 Rh2DG186700
rosa_wichuraiana Rw2G014120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 463
AatII GACGTC 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 463
AccB1I GGYRCC 1 cut(s) 135
AccII CGCG 1 cut(s) 123
AciI CCGC 6 cut(s) 121, 139, 142, 172, 245, 294
AcoI YGGCCR 1 cut(s) 60
AcyI GRCGYC 2 cut(s) 114, 350
AfiI CCNNNNNNNGG 2 cut(s) 127, 299
AgsI TTSAA 3 cut(s) 91, 211, 460
AluBI AGCT 1 cut(s) 327
AluI AGCT 1 cut(s) 327
Alw26I GTCTC 1 cut(s) 42
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 169, 402
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 2 cut(s) 105, 422
AsuC2I CCSGG 3 cut(s) 110, 426, 427
AsuHPI GGTGA 3 cut(s) 178, 457, 502
AsuII TTCGAA 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 2 cut(s) 105, 422
BalI TGGCCA 1 cut(s) 62
BanI GGYRCC 1 cut(s) 135
BbsI GAAGAC 2 cut(s) 201, 327
BbvI GCAGC 2 cut(s) 181, 414
BccI CCATC 1 cut(s) 404
BceAI ACGGC 1 cut(s) 299
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 3 cut(s) 110, 426, 427
BcoDI GTCTC 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 463
BisI GCNGC 4 cut(s) 142, 170, 245, 403
BlsI GCNGC 4 cut(s) 143, 171, 246, 404
Bme1390I CCNGG 3 cut(s) 110, 426, 427
Bme18I GGWCC 2 cut(s) 105, 422
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 2 cut(s) 105, 422
BmiI GGNNCC 3 cut(s) 107, 137, 424
BmrFI CCNGG 3 cut(s) 110, 426, 427
BpiI GAAGAC 2 cut(s) 201, 327
Bpu14I TTCGAA 1 cut(s) 503
BpuMI CCSGG 3 cut(s) 110, 426, 427
BsaHI GRCGYC 2 cut(s) 114, 350
BsaJI CCNNGG 4 cut(s) 57, 108, 425, 426
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 299
BseDI CCNNGG 4 cut(s) 57, 108, 425, 426
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 2 cut(s) 127, 299
BseRI GAGGAG 4 cut(s) 30, 266, 269, 272
BseXI GCAGC 2 cut(s) 181, 414
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 3 cut(s) 110, 248, 426
BslFI GGGAC 3 cut(s) 91, 315, 408
BslI CCNNNNNNNGG 2 cut(s) 127, 299
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 3 cut(s) 91, 315, 408
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 425
Bsp119I TTCGAA 1 cut(s) 503
Bsp143I GATC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 6 cut(s) 121, 139, 142, 172, 245, 294
BspANI GGCC 1 cut(s) 62
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 3 cut(s) 107, 137, 424
BspMI ACCTGC 1 cut(s) 463
BspT104I TTCGAA 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 135
BssECI CCNNGG 4 cut(s) 57, 108, 425, 426
BssMI GATC 1 cut(s) 66
BssNI GRCGYC 2 cut(s) 114, 350
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 4 cut(s) 36, 372, 445, 490
Bst6I CTCTTC 2 cut(s) 92, 294
BstACI GRCGYC 2 cut(s) 114, 350
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 484
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 147, 169, 469
BstSCI CCNGG 3 cut(s) 108, 424, 425
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 181, 414
BstV2I GAAGAC 2 cut(s) 201, 327
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 1 cut(s) 470
BveI ACCTGC 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 484
CfoI GCGC 1 cut(s) 472
Cfr13I GGNCC 2 cut(s) 105, 422
Cfr9I CCCGGG 1 cut(s) 425
CseI GACGC 2 cut(s) 122, 172
CviAII CATG 3 cut(s) 58, 64, 70
CviJI RGCY 4 cut(s) 62, 244, 327, 405
CviKI_1 RGCY 4 cut(s) 62, 244, 327, 405
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 92, 294
EarI CTCTTC 2 cut(s) 92, 294
Eco130I CCWWGG 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 105, 422
Eco88I CYCGRG 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 3 cut(s) 61, 67, 73
FaiI YATR 4 cut(s) 59, 65, 71, 416
FaqI GGGAC 3 cut(s) 91, 315, 408
FatI CATG 3 cut(s) 57, 63, 69
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 4 cut(s) 142, 170, 245, 403
FokI GGATG 1 cut(s) 15
Fsp4HI GCNGC 4 cut(s) 142, 170, 245, 403
GlaI GCGC 1 cut(s) 471
GluI GCNGC 4 cut(s) 142, 170, 245, 403
HaeIII GGCC 1 cut(s) 62
HapII CCGG 3 cut(s) 110, 248, 426
HgaI GACGC 2 cut(s) 122, 172
HhaI GCGC 1 cut(s) 472
Hin1I GRCGYC 2 cut(s) 114, 350
Hin1II CATG 3 cut(s) 61, 67, 73
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 3 cut(s) 276, 303, 383
HpaII CCGG 3 cut(s) 110, 248, 426
HphI GGTGA 3 cut(s) 178, 457, 502
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 5 cut(s) 7, 78, 283, 348, 376
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 6 cut(s) 128, 194, 352, 355, 358, 376
HpyAV CCTTC 2 cut(s) 57, 442
HpyCH4III ACNGT 4 cut(s) 36, 372, 445, 490
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 1 cut(s) 486
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 169, 469
HpySE526I ACGT 1 cut(s) 350
Hsp92I GRCGYC 2 cut(s) 114, 350
Hsp92II CATG 3 cut(s) 61, 67, 73
HspAI GCGC 1 cut(s) 470
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 5 cut(s) 123, 142, 261, 439, 458
Lsp1109I GCAGC 2 cut(s) 181, 414
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 5 cut(s) 42, 79, 206, 281, 327
MlsI TGGCCA 1 cut(s) 62
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 3 cut(s) 270, 297, 377
MmeI TCCRAC 2 cut(s) 354, 371
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MslI CAYNNNNRTG 2 cut(s) 62, 68
Msp20I TGGCCA 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 3 cut(s) 110, 248, 426
MspR9I CCNGG 3 cut(s) 110, 426, 427
Mva1269I GAATGC 1 cut(s) 383
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 147, 169, 469
NciI CCSGG 3 cut(s) 110, 426, 427
NcoI CCATGG 1 cut(s) 57
NdeII GATC 1 cut(s) 66
NlaIII CATG 3 cut(s) 61, 67, 73
NlaIV GGNNCC 3 cut(s) 107, 137, 424
NmuCI GTSAC 1 cut(s) 184
NspV TTCGAA 1 cut(s) 503
PaqCI CACCTGC 1 cut(s) 463
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 362
PctI GAATGC 1 cut(s) 383
PflFI GACNNNGTC 2 cut(s) 352, 370
PkrI GCNGC 4 cut(s) 143, 171, 246, 404
PleI GAGTC 3 cut(s) 270, 297, 377
PpsI GAGTC 3 cut(s) 270, 297, 377
PspN4I GGNNCC 3 cut(s) 107, 137, 424
PspPI GGNCC 2 cut(s) 105, 422
PsyI GACNNNGTC 2 cut(s) 352, 370
RseI CAYNNNNRTG 2 cut(s) 62, 68
SatI GCNGC 4 cut(s) 142, 170, 245, 403
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 2 cut(s) 105, 422
SchI GAGTC 3 cut(s) 270, 297, 377
ScrFI CCNGG 3 cut(s) 110, 426, 427
SetI ASST 7 cut(s) 13, 28, 201, 329, 353, 458, 477
SfuI TTCGAA 1 cut(s) 503
SinI GGWCC 2 cut(s) 105, 422
SmaI CCCGGG 1 cut(s) 427
SmiMI CAYNNNNRTG 2 cut(s) 62, 68
SsiI CCGC 6 cut(s) 121, 139, 142, 172, 245, 294
StyD4I CCNGG 3 cut(s) 108, 424, 425
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 4 cut(s) 36, 372, 445, 490
TaiI ACGT 1 cut(s) 353
TaqI TCGA 1 cut(s) 503
TauI GCSGC 2 cut(s) 144, 247
TscAI CASTG 1 cut(s) 470
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 169, 402
Tsp45I GTSAC 1 cut(s) 184
TspMI CCCGGG 1 cut(s) 425
TspRI CASTG 1 cut(s) 470
Tth111I GACNNNGTC 2 cut(s) 352, 370
VpaK11BI GGWCC 2 cut(s) 105, 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XmaI CCCGGG 1 cut(s) 425
ZraI GACGTC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.