RLG00000017447

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012887
Physical Location & Seq
Reverse (-)
16896120 .. 16896915
796 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017447

Sequence Viewer

Length: 504 bp
ATGTCTGAACCTCACGCGCTGCCACCTCCACCCCCTCCCCCACCTTCCTCCACGGCCATGCTCATGCCTCCTAATCCTCTCTACAAGCAGAAGTCGTGGTCCCCGGACGCCTACCGCGACGAGGCGTGGCACCGCCGCAAAAGCAACAGCAGGAAGCAAAAGCAGCGGAGCAAGAGCGTCACCGACGAAGACCTTGATGAGTTGAAGGCTTGTATTGAGTTGGGGTTTGGGTTTGAGCCGCCGGAGGAGAAGGAGGATGCTGACCGACGACTCTCCGATACTCTTCCCGCTTTGGGACTCTACTACGCCGTCAACAGAAGCTACAAGTCTTCCACCACTCCGACGTCGTCGTTCTCGCCGACACCGTCGGAGTGCGACTCCCACTCCCCCATCGGCAGCCCCCACACCATATTCGGTCCCGGGGATAATCCACAGACGGTGAAGGCAAGGTTGAAGCAGTGGGCACAGGTGGTTGCTTGCACGGTGAGGCAGAGTTCGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

168

Amino Acids

18.55

Weight (kDa)

7.73

Isoelectric Point (pI)

92.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 60 - 119 4.4e-26 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50350 AT3G50350
fragaria_vesca FvH4_1g16050
malus_domestica MD02G1171900.v1.1 MD15G1283800.v1.1
prunus_persica Prupe.7G133400_v2.0.a1
pyrus_communis pycom02g13860 pycom15g24680
rosa_chinensis RchiOBHm_Chr2g0105661
rosa_laevigata RLG00000017447
rosa_multiflora Rmu_sc0001051.1_g000050
rosa_roxburghii Rroxscaffold_2G00138010
rosa_rugosa Rorug02G0129100
rosa_samantha Rh2AG180700 Rh2BG189600 Rh2CG184900 Rh2DG186700
rosa_wichuraiana Rw2G014120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 129
AccII CGCG 2 cut(s) 17, 117
AciI CCGC 6 cut(s) 115, 133, 136, 166, 239, 288
AcoI YGGCCR 1 cut(s) 54
AcyI GRCGYC 2 cut(s) 108, 344
AfiI CCNNNNNNNGG 2 cut(s) 121, 293
AgsI TTSAA 2 cut(s) 205, 454
AluBI AGCT 2 cut(s) 321, 501
AluI AGCT 2 cut(s) 321, 501
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 3 cut(s) 19, 163, 396
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 99, 416
AsuC2I CCSGG 3 cut(s) 104, 420, 421
AsuHPI GGTGA 3 cut(s) 172, 451, 496
AvaI CYCGRG 1 cut(s) 419
AvaII GGWCC 2 cut(s) 99, 416
BaeGI GKGCMC 1 cut(s) 466
BanI GGYRCC 1 cut(s) 129
BbsI GAAGAC 2 cut(s) 195, 321
BbvI GCAGC 3 cut(s) 6, 175, 408
BccI CCATC 1 cut(s) 398
BceAI ACGGC 2 cut(s) 69, 293
BcnI CCSGG 3 cut(s) 104, 420, 421
BisI GCNGC 5 cut(s) 20, 136, 164, 239, 397
BlsI GCNGC 5 cut(s) 21, 137, 165, 240, 398
Bme1390I CCNGG 3 cut(s) 104, 420, 421
Bme18I GGWCC 2 cut(s) 99, 416
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 2 cut(s) 99, 416
BmiI GGNNCC 3 cut(s) 101, 131, 418
BmrFI CCNGG 3 cut(s) 104, 420, 421
BmsI GCATC 1 cut(s) 247
BpiI GAAGAC 2 cut(s) 195, 321
BplI GAGNNNNNCTC 2 cut(s) 362, 394
BpuMI CCSGG 3 cut(s) 104, 420, 421
BsaHI GRCGYC 2 cut(s) 108, 344
BsaJI CCNNGG 4 cut(s) 51, 102, 419, 420
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 293
BseDI CCNNGG 4 cut(s) 51, 102, 419, 420
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 2 cut(s) 121, 293
BseRI GAGGAG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 466
BseXI GCAGC 3 cut(s) 6, 175, 408
Bsh1236I CGCG 2 cut(s) 17, 117
BshFI GGCC 1 cut(s) 56
BshNI GGYRCC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 3 cut(s) 104, 242, 420
BslFI GGGAC 3 cut(s) 85, 309, 402
BslI CCNNNNNNNGG 2 cut(s) 121, 293
BsmFI GGGAC 3 cut(s) 85, 309, 402
BsnI GGCC 1 cut(s) 56
BsoBI CYCGRG 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 466
BspACI CCGC 6 cut(s) 115, 133, 136, 166, 239, 288
BspANI GGCC 1 cut(s) 56
BspFNI CGCG 2 cut(s) 17, 117
BspLI GGNNCC 3 cut(s) 101, 131, 418
BspT107I GGYRCC 1 cut(s) 129
BssECI CCNNGG 4 cut(s) 51, 102, 419, 420
BssNI GRCGYC 2 cut(s) 108, 344
Bst4CI ACNGT 3 cut(s) 366, 439, 484
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 2 cut(s) 108, 344
BstC8I GCNNGC 1 cut(s) 478
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 2 cut(s) 17, 117
BstHHI GCGC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 141, 163
BstSCI CCNGG 3 cut(s) 102, 418, 419
BstSLI GKGCMC 1 cut(s) 466
BstUI CGCG 2 cut(s) 17, 117
BstV1I GCAGC 3 cut(s) 6, 175, 408
BstV2I GAAGAC 2 cut(s) 195, 321
BsuRI GGCC 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 464
BtsIMutI CAGTG 1 cut(s) 464
Cac8I GCNNGC 1 cut(s) 478
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 99, 416
Cfr9I CCCGGG 1 cut(s) 419
CseI GACGC 2 cut(s) 116, 166
CviAII CATG 2 cut(s) 58, 64
CviJI RGCY 6 cut(s) 56, 209, 238, 321, 399, 501
CviKI_1 RGCY 6 cut(s) 56, 209, 238, 321, 399, 501
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 99, 416
Eco88I CYCGRG 1 cut(s) 419
FaeI CATG 2 cut(s) 61, 67
FaiI YATR 3 cut(s) 59, 65, 410
FaqI GGGAC 3 cut(s) 85, 309, 402
FatI CATG 2 cut(s) 57, 63
FauI CCCGC 1 cut(s) 295
Fnu4HI GCNGC 5 cut(s) 20, 136, 164, 239, 397
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 5 cut(s) 20, 136, 164, 239, 397
GlaI GCGC 1 cut(s) 18
GluI GCNGC 5 cut(s) 20, 136, 164, 239, 397
HaeIII GGCC 1 cut(s) 56
HapII CCGG 3 cut(s) 104, 242, 420
HgaI GACGC 2 cut(s) 116, 166
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 2 cut(s) 108, 344
Hin1II CATG 2 cut(s) 61, 67
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 3 cut(s) 270, 297, 377
HpaII CCGG 3 cut(s) 104, 242, 420
HphI GGTGA 3 cut(s) 172, 451, 496
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 4 cut(s) 7, 277, 342, 370
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 7 cut(s) 122, 188, 270, 346, 349, 352, 370
HpyAV CCTTC 4 cut(s) 54, 199, 244, 436
HpyCH4III ACNGT 3 cut(s) 366, 439, 484
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 1 cut(s) 480
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 163
HpySE526I ACGT 1 cut(s) 344
Hsp92I GRCGYC 2 cut(s) 108, 344
Hsp92II CATG 2 cut(s) 61, 67
HspAI GCGC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 5 cut(s) 117, 136, 255, 433, 452
Lsp1109I GCAGC 3 cut(s) 6, 175, 408
LweI GCATC 1 cut(s) 247
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 178
MboII GAAGA 3 cut(s) 200, 275, 321
MhlI GDGCHC 1 cut(s) 466
MlyI GAGTC 3 cut(s) 264, 291, 371
MmeI TCCRAC 2 cut(s) 348, 365
MslI CAYNNNNRTG 2 cut(s) 56, 62
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 3 cut(s) 104, 242, 420
MspR9I CCNGG 3 cut(s) 104, 420, 421
MvnI CGCG 2 cut(s) 17, 117
MwoI GCNNNNNNNGC 2 cut(s) 141, 163
NciI CCSGG 3 cut(s) 104, 420, 421
NlaIII CATG 2 cut(s) 61, 67
NlaIV GGNNCC 3 cut(s) 101, 131, 418
NmuCI GTSAC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 3 cut(s) 114, 356, 362
PflFI GACNNNGTC 2 cut(s) 346, 364
PkrI GCNGC 5 cut(s) 21, 137, 165, 240, 398
PleI GAGTC 3 cut(s) 264, 291, 371
PpsI GAGTC 3 cut(s) 264, 291, 371
PspN4I GGNNCC 3 cut(s) 101, 131, 418
PspPI GGNCC 2 cut(s) 99, 416
PsyI GACNNNGTC 2 cut(s) 346, 364
RseI CAYNNNNRTG 2 cut(s) 56, 62
SatI GCNGC 5 cut(s) 20, 136, 164, 239, 397
Sau96I GGNCC 2 cut(s) 99, 416
SchI GAGTC 3 cut(s) 264, 291, 371
ScrFI CCNGG 3 cut(s) 104, 420, 421
SduI GDGCHC 1 cut(s) 466
SetI ASST 9 cut(s) 13, 28, 46, 195, 323, 347, 452, 471, 503
SfaNI GCATC 1 cut(s) 247
SinI GGWCC 2 cut(s) 99, 416
SmaI CCCGGG 1 cut(s) 421
SmiMI CAYNNNNRTG 2 cut(s) 56, 62
SsiI CCGC 6 cut(s) 115, 133, 136, 166, 239, 288
StyD4I CCNGG 3 cut(s) 102, 418, 419
TaaI ACNGT 3 cut(s) 366, 439, 484
TaiI ACGT 1 cut(s) 347
TaqI TCGA 1 cut(s) 497
TaqII GACCGA 2 cut(s) 279, 404
TauI GCSGC 2 cut(s) 138, 241
TscAI CASTG 1 cut(s) 464
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 3 cut(s) 19, 163, 396
Tsp45I GTSAC 1 cut(s) 178
TspMI CCCGGG 1 cut(s) 419
TspRI CASTG 1 cut(s) 464
Tth111I GACNNNGTC 2 cut(s) 346, 364
VpaK11BI GGWCC 2 cut(s) 99, 416
XmaI CCCGGG 1 cut(s) 419
ZraI GACGTC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.