Rroxscaffold_2G00138010

Protein of unknown function (DUF1685)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012887
Physical Location & Seq
Forward (+)
76031711 .. 76033009
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00138010.1

Sequence Viewer

Length: 426 bp
ATGTCTGAACCTCACGCGCTGCCACCTCCACCCCCTCCCCCACCTTCCTCCACCGCCATGCTCATGCCTCCTAATCCTCTCTACAAGCAGAAGTCGTGGTCCCCGGACGCCTACCGCGACGAGGCGTGGCACCGCCGCAAAAGCAACAGCAGGAAGCAAAAGCAGCGGAGCAAGAGCGTCACCGACGAAGACCTTGATGAGTTGAAGGCGTGTATTGAGTTGGGGTTCGGGTTTGAGCCGCCGGAGGAGGAGGAGGGTGCTGACCAACGACTCTCCGATACTCTTCCCGCTTTGGGACTCTACTACGCCGTCAACAGAAGCTACAAGTCTTCCACCACTCCGACGTCGTCGTTCTCGCCGACACCGTCGGAGTGCGACTCCCACTCCCCCATCGGCAGCCCCCACACCATATTCGGTCCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1685

Protein Analysis

141

Amino Acids

15.62

Weight (kDa)

5.54

Isoelectric Point (pI)

95.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1685 PF07939 60 - 119 4.4e-26 Protein of unknown function (DUF1685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50350 AT3G50350
fragaria_vesca FvH4_1g16050
malus_domestica MD02G1171900.v1.1 MD15G1283800.v1.1
prunus_persica Prupe.7G133400_v2.0.a1
pyrus_communis pycom02g13860 pycom15g24680
rosa_chinensis RchiOBHm_Chr2g0105661
rosa_laevigata RLG00000017447
rosa_multiflora Rmu_sc0001051.1_g000050
rosa_roxburghii Rroxscaffold_2G00138010
rosa_rugosa Rorug02G0129100
rosa_samantha Rh2AG180700 Rh2BG189600 Rh2CG184900 Rh2DG186700
rosa_wichuraiana Rw2G014120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 129
AccII CGCG 2 cut(s) 17, 117
AciI CCGC 7 cut(s) 54, 115, 133, 136, 166, 239, 288
AcyI GRCGYC 2 cut(s) 108, 344
AfiI CCNNNNNNNGG 2 cut(s) 121, 293
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 1 cut(s) 321
AluI AGCT 1 cut(s) 321
ApeKI GCWGC 3 cut(s) 19, 163, 396
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 99, 416
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 2 cut(s) 99, 416
BanI GGYRCC 1 cut(s) 129
BbsI GAAGAC 2 cut(s) 195, 321
BbvI GCAGC 3 cut(s) 6, 175, 408
BccI CCATC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 293
BcnI CCSGG 1 cut(s) 104
BisI GCNGC 5 cut(s) 20, 136, 164, 239, 397
BlsI GCNGC 5 cut(s) 21, 137, 165, 240, 398
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 2 cut(s) 99, 416
BmgT120I GGNCC 2 cut(s) 99, 416
BmiI GGNNCC 3 cut(s) 101, 131, 418
BmrFI CCNGG 1 cut(s) 104
BpiI GAAGAC 2 cut(s) 195, 321
BplI GAGNNNNNCTC 2 cut(s) 362, 394
BpuMI CCSGG 1 cut(s) 104
BsaHI GRCGYC 2 cut(s) 108, 344
BsaJI CCNNGG 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 293
BseDI CCNNGG 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 121, 293
BseRI GAGGAG 3 cut(s) 260, 263, 266
BseXI GCAGC 3 cut(s) 6, 175, 408
Bsh1236I CGCG 2 cut(s) 17, 117
BshNI GGYRCC 1 cut(s) 129
BsiSI CCGG 2 cut(s) 104, 242
BslFI GGGAC 3 cut(s) 85, 309, 402
BslI CCNNNNNNNGG 2 cut(s) 121, 293
BsmFI GGGAC 3 cut(s) 85, 309, 402
BspACI CCGC 7 cut(s) 54, 115, 133, 136, 166, 239, 288
BspFNI CGCG 2 cut(s) 17, 117
BspLI GGNNCC 3 cut(s) 101, 131, 418
BspT107I GGYRCC 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 102
BssNI GRCGYC 2 cut(s) 108, 344
Bst4CI ACNGT 1 cut(s) 366
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 2 cut(s) 108, 344
BstFNI CGCG 2 cut(s) 17, 117
BstHHI GCGC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 141, 163
BstSCI CCNGG 1 cut(s) 102
BstUI CGCG 2 cut(s) 17, 117
BstV1I GCAGC 3 cut(s) 6, 175, 408
BstV2I GAAGAC 2 cut(s) 195, 321
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 99, 416
CseI GACGC 2 cut(s) 116, 166
CviAII CATG 2 cut(s) 58, 64
CviJI RGCY 3 cut(s) 238, 321, 399
CviKI_1 RGCY 3 cut(s) 238, 321, 399
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 99, 416
FaeI CATG 2 cut(s) 61, 67
FaiI YATR 3 cut(s) 59, 65, 410
FaqI GGGAC 3 cut(s) 85, 309, 402
FatI CATG 2 cut(s) 57, 63
FauI CCCGC 1 cut(s) 295
Fnu4HI GCNGC 5 cut(s) 20, 136, 164, 239, 397
Fsp4HI GCNGC 5 cut(s) 20, 136, 164, 239, 397
GlaI GCGC 1 cut(s) 18
GluI GCNGC 5 cut(s) 20, 136, 164, 239, 397
HapII CCGG 2 cut(s) 104, 242
HgaI GACGC 2 cut(s) 116, 166
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 2 cut(s) 108, 344
Hin1II CATG 2 cut(s) 61, 67
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 3 cut(s) 270, 297, 377
HpaII CCGG 2 cut(s) 104, 242
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 4 cut(s) 7, 277, 342, 370
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 6 cut(s) 122, 188, 346, 349, 352, 370
HpyAV CCTTC 2 cut(s) 54, 199
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4IV ACGT 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 163
HpySE526I ACGT 1 cut(s) 344
Hsp92I GRCGYC 2 cut(s) 108, 344
Hsp92II CATG 2 cut(s) 61, 67
HspAI GCGC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 3 cut(s) 117, 136, 255
Lsp1109I GCAGC 3 cut(s) 6, 175, 408
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 178
MboII GAAGA 3 cut(s) 200, 275, 321
MlyI GAGTC 3 cut(s) 264, 291, 371
MmeI TCCRAC 2 cut(s) 348, 365
MslI CAYNNNNRTG 2 cut(s) 56, 62
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 2 cut(s) 104, 242
MspR9I CCNGG 1 cut(s) 104
MvnI CGCG 2 cut(s) 17, 117
MwoI GCNNNNNNNGC 2 cut(s) 141, 163
NciI CCSGG 1 cut(s) 104
NlaIII CATG 2 cut(s) 61, 67
NlaIV GGNNCC 3 cut(s) 101, 131, 418
NmuCI GTSAC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 3 cut(s) 114, 356, 362
PflFI GACNNNGTC 2 cut(s) 346, 364
PkrI GCNGC 5 cut(s) 21, 137, 165, 240, 398
PleI GAGTC 3 cut(s) 264, 291, 371
PpsI GAGTC 3 cut(s) 264, 291, 371
PspN4I GGNNCC 3 cut(s) 101, 131, 418
PspPI GGNCC 2 cut(s) 99, 416
PsyI GACNNNGTC 2 cut(s) 346, 364
RseI CAYNNNNRTG 2 cut(s) 56, 62
SatI GCNGC 5 cut(s) 20, 136, 164, 239, 397
Sau96I GGNCC 2 cut(s) 99, 416
SchI GAGTC 3 cut(s) 264, 291, 371
ScrFI CCNGG 1 cut(s) 104
SetI ASST 6 cut(s) 13, 28, 46, 195, 323, 347
SinI GGWCC 2 cut(s) 99, 416
SmiMI CAYNNNNRTG 2 cut(s) 56, 62
SsiI CCGC 7 cut(s) 54, 115, 133, 136, 166, 239, 288
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 366
TaiI ACGT 1 cut(s) 347
TaqII GACCGA 1 cut(s) 404
TauI GCSGC 2 cut(s) 138, 241
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 3 cut(s) 19, 163, 396
Tsp45I GTSAC 1 cut(s) 178
Tth111I GACNNNGTC 2 cut(s) 346, 364
VpaK11BI GGWCC 2 cut(s) 99, 416
ZraI GACGTC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.