FvH4_1g16210

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
9277022 .. 9280039
3018 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16210.t3

Sequence Viewer

Length: 1500 bp
ATGTCTTCTGATACCAAAACAGAGCACATGAACGACCACCTCTCCGAACCCACCTCCATTTTTGGCCTGAGCCTTTGGGTGGTTCTCGGAGTCTGCGTCGGAGCCGCCTTTGTGCTCGTTCTGGTCCTCATTTCTCTCTACTTGGCCTCCAAGCGATCCAAGAACAAGTCTTTACAGACACCCTCAATCCCTGTCGTCTCCAAGGAGATCCAGGAGATCAGGGTCGACCATGTTCAGGCTTACCCGAACCCGGAACCCGACCCGGCTCCGAGAGTCGAGAGGCAAGCTTTGCTCAAGTCTGCAGAGGAGGAGAGCTCAGTTGGGTATCAGAAGGTTCACATTGATATAGGGAAGGACCATAGGATTAATTATCCATGTGGGAGGTCTTCTTCTTCACATGGAAGTGGGGAGGCTCAGGTTGCTATGGTGGGCCCTGAGGTTTCTCACTTGGGTTGGGGACATTGGTACACTCTGAGAGAGCTTGAGGTGGCAACTAATGGGTTTGTACATGAGAATGTTATAGGTGAAGGAGGGTATGGGATTGTGTACCATGGTGTTTTGGAAGACAAGACTCAGATTGCTGTCAAGAACTTGCTCAACAACAAGGGGCAAGCTGAGAAGGAGTTCAAGGTTGAAGTTGAGGTAATCGGACGAGTTCGACATAAGAATTTAGTGAGATTGCTTGGTTTCTGTGCTGAAGGAGCTCATAGGATGCTTGTGTATGAGTATGTCAACAATGGTAACTTAGAACAGTGGATTCATGGCGATGTAGGGCCTGTGAGTCCCCTGACTTGGGAGATTCGGATGAACATCATATTGAAAACTGCAAAAGGGTTATCATACCTTCATGAAGGACTGGAACCCAAGGTTATTCATCGTGATATAAAATCGAGCAACATTTTACTTGACAAGCAGTGGAATGCCAAGGTGTCAGACTTTGGCCTCGCTAAGCTCATTGGCTCTGAGAGGAGCTATATTACAACCCGAGTCATGGGAACGTTTGGCTATGTAGCCCCCGAATATGCCAGCACGGGCATGTTGAATGAGAGAAGTGATGTGTATAGCTTTGGGATTCTTATCATGGAGATAATATCGGGGAGGAATCCAGTAGATTATAGCCAGCCTCCAGGAGAGGTGAACTTGGTTGAGTGGCTTAAGAAGATGGTTGCTAACAGGGAACCAGAGAAGGTTTTGGATCCTAAGTTATCTGAGAAACCTCATTCCAGAGCACTTAAGAGAGCTCTTCTTGTAGCTTTGAAGTGTGTGGACCCAAATGCACTGAAGCGGCCGAGAATGGGACATGTTGTTCATATGCTAGAAGCTGAAGAGGAGCAATTCAAAGATGATGGGAGATCTATACGGGGACTTGGAGGTTCAGACGCTGACAATGTGAAGAATGGGTTGAAGAAAAAGCAAGTAACAGAATCAGGTGATAGTAGCGGATATGAAAATGGAATGCGTGCCGATAAGATAAGACAGAGACACGAAGAAGAAAAGTAG

Protein Analysis

500

Amino Acids

55.65

Weight (kDa)

6.85

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 170 - 385 2.5e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 171 - 371 1.7e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AciI CCGC 3 cut(s) 105, 1285, 1440
AclI AACGTT 1 cut(s) 998
AclWI GGATC 4 cut(s) 150, 202, 1190, 1203
AcoI YGGCCR 1 cut(s) 1286
AcsI RAATTY 1 cut(s) 667
AcuI CTGAAG 3 cut(s) 717, 1301, 1344
AfaI GTAC 3 cut(s) 467, 507, 548
AfiI CCNNNNNNNGG 7 cut(s) 79, 235, 250, 792, 793, 991, 1295
AflII CTTAAG 2 cut(s) 1154, 1232
AflIII ACRYGT 1 cut(s) 1300
AgsI TTSAA 7 cut(s) 628, 635, 820, 1042, 1258, 1339, 1405
AjnI CCWGG 2 cut(s) 210, 1126
AloI GAACNNNNNNTCC 2 cut(s) 1290, 1322
Alw21I GWGCWC 6 cut(s) 27, 117, 317, 706, 1231, 1243
Alw26I GTCTC 2 cut(s) 202, 1474
AlwI GGATC 4 cut(s) 150, 202, 1190, 1203
AlwNI CAGNNNCTG 1 cut(s) 1382
Ama87I CYCGRG 1 cut(s) 984
AoxI GGCC 6 cut(s) 64, 144, 430, 773, 940, 1286
ApaI GGGCCC 1 cut(s) 434
ApoI RAATTY 1 cut(s) 667
AseI ATTAAT 1 cut(s) 366
Asp700I GAANNNNTTC 1 cut(s) 623
AspS9I GGNCC 6 cut(s) 124, 355, 430, 431, 773, 1267
AsuC2I CCSGG 2 cut(s) 251, 263
AsuHPI GGTGA 3 cut(s) 536, 1147, 1442
AvaI CYCGRG 1 cut(s) 984
AvaII GGWCC 3 cut(s) 124, 355, 1267
AxyI CCTNAGG 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 434
BamHI GGATCC 1 cut(s) 1195
BanII GRGCYC 4 cut(s) 317, 434, 706, 1243
BbsI GAAGAC 2 cut(s) 378, 570
Bbv12I GWGCWC 6 cut(s) 27, 117, 317, 706, 1231, 1243
BccI CCATC 2 cut(s) 1156, 1340
BciT130I CCWGG 2 cut(s) 212, 1128
BcnI CCSGG 2 cut(s) 251, 263
BcoDI GTCTC 2 cut(s) 202, 1474
BfaI CTAG 1 cut(s) 1316
BfmI CTRYAG 1 cut(s) 300
BfrI CTTAAG 2 cut(s) 1154, 1232
BglII AGATCT 1 cut(s) 1352
BisI GCNGC 2 cut(s) 105, 1286
BlpI GCTNAGC 1 cut(s) 948
BlsI GCNGC 2 cut(s) 106, 1287
Bme1390I CCNGG 4 cut(s) 212, 251, 263, 1128
Bme18I GGWCC 3 cut(s) 124, 355, 1267
BmeT110I CYCGRG 1 cut(s) 984
BmgT120I GGNCC 6 cut(s) 124, 355, 430, 431, 773, 1267
BmiI GGNNCC 8 cut(s) 103, 255, 267, 432, 861, 1179, 1197, 1269
BmrFI CCNGG 4 cut(s) 212, 251, 263, 1128
BmsI GCATC 1 cut(s) 702
BpiI GAAGAC 2 cut(s) 378, 570
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 1 cut(s) 1110
Bpu10I CCTNAGC 2 cut(s) 68, 414
Bpu1102I GCTNAGC 1 cut(s) 948
BpuEI CTTGAG 2 cut(s) 278, 503
BpuMI CCSGG 2 cut(s) 251, 263
BsaBI GATNNNNATC 2 cut(s) 809, 1076
BsaJI CCNNGG 4 cut(s) 201, 550, 864, 924
BsaXI ACNNNNNCTCC 6 cut(s) 26, 56, 81, 111, 131, 161
Bsc4I CCNNNNNNNGG 7 cut(s) 79, 235, 250, 792, 793, 991, 1295
Bse1I ACTGG 2 cut(s) 861, 1106
Bse21I CCTNAGG 1 cut(s) 435
Bse8I GATNNNNATC 2 cut(s) 809, 1076
BseBI CCWGG 2 cut(s) 212, 1128
BseDI CCNNGG 4 cut(s) 201, 550, 864, 924
BseGI GGATG 2 cut(s) 717, 810
BseJI GATNNNNATC 2 cut(s) 809, 1076
BseLI CCNNNNNNNGG 7 cut(s) 79, 235, 250, 792, 793, 991, 1295
BseMII CTCAG 9 cut(s) 59, 330, 426, 428, 464, 587, 606, 954, 1200
BseNI ACTGG 2 cut(s) 861, 1106
BseRI GAGGAG 4 cut(s) 320, 323, 982, 1343
BseSI GKGCMC 1 cut(s) 434
BseX3I CGGCCG 1 cut(s) 1286
Bsh1285I CGRYCG 1 cut(s) 1289
BshFI GGCC 6 cut(s) 66, 146, 432, 775, 942, 1288
BsiEI CGRYCG 1 cut(s) 1289
BsiHKAI GWGCWC 6 cut(s) 27, 117, 317, 706, 1231, 1243
BsiHKCI CYCGRG 1 cut(s) 984
BsiSI CCGG 2 cut(s) 251, 263
BslFI GGGAC 4 cut(s) 471, 768, 1311, 1377
BslI CCNNNNNNNGG 7 cut(s) 79, 235, 250, 792, 793, 991, 1295
BsmAI GTCTC 2 cut(s) 202, 1474
BsmBI CGTCTC 1 cut(s) 202
BsmFI GGGAC 4 cut(s) 471, 768, 1311, 1377
BsmI GAATGC 2 cut(s) 925, 1461
BsnI GGCC 6 cut(s) 66, 146, 432, 775, 942, 1288
BsoBI CYCGRG 1 cut(s) 984
Bsp120I GGGCCC 1 cut(s) 430
Bsp1286I GDGCHC 7 cut(s) 27, 117, 317, 434, 706, 1231, 1243
Bsp1407I TGTACA 1 cut(s) 505
Bsp143I GATC 5 cut(s) 155, 207, 216, 1195, 1352
Bsp1720I GCTNAGC 1 cut(s) 948
Bsp19I CCATGG 1 cut(s) 550
BspACI CCGC 3 cut(s) 105, 1285, 1440
BspANI GGCC 6 cut(s) 66, 146, 432, 775, 942, 1288
BspCNI CTCAG 9 cut(s) 60, 329, 427, 427, 465, 586, 607, 955, 1201
BspHI TCATGA 1 cut(s) 847
BspLI GGNNCC 8 cut(s) 103, 255, 267, 432, 861, 1179, 1197, 1269
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 4 cut(s) 150, 202, 1190, 1203
BspQI GCTCTTC 1 cut(s) 1248
BspTI CTTAAG 2 cut(s) 1154, 1232
BsrGI TGTACA 1 cut(s) 505
BsrI ACTGG 2 cut(s) 861, 1106
BssECI CCNNGG 4 cut(s) 201, 550, 864, 924
BssMI GATC 5 cut(s) 155, 207, 216, 1195, 1352
BssT1I CCWWGG 4 cut(s) 201, 550, 864, 924
Bst2UI CCWGG 2 cut(s) 212, 1128
Bst4CI ACNGT 1 cut(s) 753
Bst6I CTCTTC 2 cut(s) 1248, 1320
BstAFI CTTAAG 2 cut(s) 1154, 1232
BstAPI GCANNNNNTGC 1 cut(s) 289
BstAUI TGTACA 1 cut(s) 505
BstC8I GCNNGC 5 cut(s) 285, 612, 1027, 1121, 1461
BstDSI CCRYGG 1 cut(s) 550
BstF5I GGATG 2 cut(s) 717, 810
BstKTI GATC 5 cut(s) 158, 210, 219, 1198, 1355
BstMAI GTCTC 2 cut(s) 202, 1474
BstMBI GATC 5 cut(s) 155, 207, 216, 1195, 1352
BstMCI CGRYCG 1 cut(s) 1289
BstMWI GCNNNNNNNGC 3 cut(s) 289, 419, 701
BstNI CCWGG 2 cut(s) 212, 1128
BstNSI RCATGY 2 cut(s) 1039, 1304
BstSCI CCNGG 4 cut(s) 210, 249, 261, 1126
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 434
BstV2I GAAGAC 2 cut(s) 378, 570
BstX2I RGATCY 3 cut(s) 207, 1195, 1352
BstYI RGATCY 3 cut(s) 207, 1195, 1352
BstZI CGGCCG 1 cut(s) 1286
Bsu36I CCTNAGG 1 cut(s) 435
BsuRI GGCC 6 cut(s) 66, 146, 432, 775, 942, 1288
BtgI CCRYGG 1 cut(s) 550
BtgZI GCGATG 1 cut(s) 780
BtsCI GGATG 2 cut(s) 717, 810
BtsI GCAGTG 1 cut(s) 920
BtsIMutI CAGTG 3 cut(s) 758, 920, 1277
Cac8I GCNNGC 5 cut(s) 285, 612, 1027, 1121, 1461
CaiI CAGNNNCTG 1 cut(s) 1382
CciI TCATGA 1 cut(s) 847
Cfr13I GGNCC 6 cut(s) 124, 355, 430, 431, 773, 1267
CseI GACGC 2 cut(s) 85, 1388
Csp6I GTAC 3 cut(s) 466, 506, 547
CviQI GTAC 3 cut(s) 466, 506, 547
DpnI GATC 5 cut(s) 157, 209, 218, 1197, 1354
DpnII GATC 5 cut(s) 155, 207, 216, 1195, 1352
EaeI YGGCCR 1 cut(s) 1286
EagI CGGCCG 1 cut(s) 1286
Eam1104I CTCTTC 2 cut(s) 1248, 1320
EarI CTCTTC 2 cut(s) 1248, 1320
Ecl136II GAGCTC 3 cut(s) 315, 704, 1241
EclXI CGGCCG 1 cut(s) 1286
Eco130I CCWWGG 4 cut(s) 201, 550, 864, 924
Eco24I GRGCYC 4 cut(s) 317, 434, 706, 1243
Eco47I GGWCC 3 cut(s) 124, 355, 1267
Eco52I CGGCCG 1 cut(s) 1286
Eco53kI GAGCTC 3 cut(s) 315, 704, 1241
Eco57I CTGAAG 3 cut(s) 717, 1301, 1344
Eco81I CCTNAGG 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 984
EcoICRI GAGCTC 3 cut(s) 315, 704, 1241
EcoO109I RGGNCCY 2 cut(s) 431, 773
EcoRII CCWGG 2 cut(s) 210, 1126
EcoT14I CCWWGG 4 cut(s) 201, 550, 864, 924
EcoT38I GRGCYC 4 cut(s) 317, 434, 706, 1243
ErhI CCWWGG 4 cut(s) 201, 550, 864, 924
Esp3I CGTCTC 1 cut(s) 202
FaqI GGGAC 4 cut(s) 471, 768, 1311, 1377
FauNDI CATATG 1 cut(s) 1311
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 105, 1286
FokI GGATG 2 cut(s) 724, 817
FriOI GRGCYC 4 cut(s) 317, 434, 706, 1243
Fsp4HI GCNGC 2 cut(s) 105, 1286
FspBI CTAG 1 cut(s) 1316
GluI GCNGC 2 cut(s) 105, 1286
GsuI CTGGAG 1 cut(s) 1110
HaeIII GGCC 6 cut(s) 66, 146, 432, 775, 942, 1288
HapII CCGG 2 cut(s) 251, 263
HgaI GACGC 2 cut(s) 85, 1388
HincII GTYRAC 2 cut(s) 226, 733
HindII GTYRAC 2 cut(s) 226, 733
HindIII AAGCTT 1 cut(s) 285
HpaII CCGG 2 cut(s) 251, 263
HphI GGTGA 3 cut(s) 536, 1147, 1442
Hpy166II GTNNAC 7 cut(s) 226, 337, 468, 547, 733, 1138, 1267
Hpy188III TCNNGA 5 cut(s) 277, 586, 848, 878, 1224
Hpy8I GTNNAC 7 cut(s) 226, 337, 468, 547, 733, 1138, 1267
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 8 cut(s) 325, 346, 521, 613, 692, 845, 854, 1180
HpyCH4III ACNGT 1 cut(s) 753
HpyCH4IV ACGT 1 cut(s) 998
HpyCH4V TGCA 3 cut(s) 302, 827, 1277
HpyF10VI GCNNNNNNNGC 3 cut(s) 289, 419, 701
HpySE526I ACGT 1 cut(s) 998
Kzo9I GATC 5 cut(s) 155, 207, 216, 1195, 1352
LguI GCTCTTC 1 cut(s) 1248
LmnI GCTCC 5 cut(s) 101, 271, 701, 969, 1330
LweI GCATC 1 cut(s) 702
MaeI CTAG 1 cut(s) 1316
MaeII ACGT 1 cut(s) 998
MaeIII GTNAC 2 cut(s) 740, 1417
MalI GATC 5 cut(s) 157, 209, 218, 1197, 1354
MboI GATC 5 cut(s) 155, 207, 216, 1195, 1352
MflI RGATCY 3 cut(s) 207, 1195, 1352
MhlI GDGCHC 7 cut(s) 27, 117, 317, 434, 706, 1231, 1243
MluCI AATT 3 cut(s) 367, 667, 1334
MlyI GAGTC 5 cut(s) 99, 282, 565, 790, 996
MmeI TCCRAC 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 623
MseI TTAA 3 cut(s) 366, 1155, 1233
MslI CAYNNNNRTG 4 cut(s) 402, 513, 765, 1034
MspCI CTTAAG 2 cut(s) 1154, 1232
MspI CCGG 2 cut(s) 251, 263
MspR9I CCNGG 4 cut(s) 212, 251, 263, 1128
Mva1269I GAATGC 2 cut(s) 925, 1461
MvaI CCWGG 2 cut(s) 212, 1128
MwoI GCNNNNNNNGC 3 cut(s) 289, 419, 701
NciI CCSGG 2 cut(s) 251, 263
NcoI CCATGG 1 cut(s) 550
NdeI CATATG 1 cut(s) 1311
NdeII GATC 5 cut(s) 155, 207, 216, 1195, 1352
NlaIV GGNNCC 8 cut(s) 103, 255, 267, 432, 861, 1179, 1197, 1269
NmeAIII GCCGAG 1 cut(s) 1314
NspI RCATGY 2 cut(s) 1039, 1304
PagI TCATGA 1 cut(s) 847
PciI ACATGT 1 cut(s) 1300
PciSI GCTCTTC 1 cut(s) 1248
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 2 cut(s) 925, 1461
PdmI GAANNNNTTC 1 cut(s) 623
PfeI GAWTC 5 cut(s) 757, 799, 1072, 1102, 1424
PfoI TCCNGGA 2 cut(s) 210, 1126
PkrI GCNGC 2 cut(s) 106, 1287
PleI GAGTC 5 cut(s) 98, 281, 565, 789, 995
PpsI GAGTC 5 cut(s) 98, 281, 565, 789, 995
PscI ACATGT 1 cut(s) 1300
PshBI ATTAAT 1 cut(s) 366
Psp124BI GAGCTC 3 cut(s) 317, 706, 1243
Psp1406I AACGTT 1 cut(s) 998
Psp6I CCWGG 2 cut(s) 210, 1126
PspGI CCWGG 2 cut(s) 210, 1126
PspN4I GGNNCC 8 cut(s) 103, 255, 267, 432, 861, 1179, 1197, 1269
PspOMI GGGCCC 1 cut(s) 430
PspPI GGNCC 6 cut(s) 124, 355, 430, 431, 773, 1267
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 1382
PsuI RGATCY 3 cut(s) 207, 1195, 1352
RsaI GTAC 3 cut(s) 467, 507, 548
RsaNI GTAC 3 cut(s) 466, 506, 547
RseI CAYNNNNRTG 4 cut(s) 402, 513, 765, 1034
SacI GAGCTC 3 cut(s) 317, 706, 1243
SalI GTCGAC 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 1248
SaqAI TTAA 3 cut(s) 366, 1155, 1233
SatI GCNGC 2 cut(s) 105, 1286
Sau3AI GATC 5 cut(s) 155, 207, 216, 1195, 1352
Sau96I GGNCC 6 cut(s) 124, 355, 430, 431, 773, 1267
SchI GAGTC 5 cut(s) 99, 282, 565, 790, 996
ScrFI CCNGG 4 cut(s) 212, 251, 263, 1128
SduI GDGCHC 7 cut(s) 27, 117, 317, 434, 706, 1231, 1243
SfaNI GCATC 1 cut(s) 702
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 3 cut(s) 124, 355, 1267
SmiMI CAYNNNNRTG 4 cut(s) 402, 513, 765, 1034
SmlI CTYRAG 4 cut(s) 293, 482, 1154, 1232
SmoI CTYRAG 4 cut(s) 293, 482, 1154, 1232
Sse9I AATT 3 cut(s) 367, 667, 1334
SsiI CCGC 3 cut(s) 105, 1285, 1440
SspMI CTAG 1 cut(s) 1316
SstI GAGCTC 3 cut(s) 317, 706, 1243
StyD4I CCNGG 4 cut(s) 210, 249, 261, 1126
StyI CCWWGG 4 cut(s) 201, 550, 864, 924
TaaI ACNGT 1 cut(s) 753
TaiI ACGT 1 cut(s) 1001
TaqI TCGA 4 cut(s) 225, 276, 658, 890
TasI AATT 3 cut(s) 367, 667, 1334
TatI WGTACW 1 cut(s) 505
TauI GCSGC 2 cut(s) 107, 1288
TfiI GAWTC 5 cut(s) 757, 799, 1072, 1102, 1424
Tru1I TTAA 3 cut(s) 366, 1155, 1233
Tru9I TTAA 3 cut(s) 366, 1155, 1233
TscAI CASTG 3 cut(s) 758, 920, 1284
TspDTI ATGAA 8 cut(s) 44, 749, 821, 836, 863, 864, 1298, 1461
TspRI CASTG 3 cut(s) 758, 920, 1284
Vha464I CTTAAG 2 cut(s) 1154, 1232
VpaK11BI GGWCC 3 cut(s) 124, 355, 1267
VspI ATTAAT 1 cut(s) 366
XapI RAATTY 1 cut(s) 667
XceI RCATGY 2 cut(s) 1039, 1304
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 623
XspI CTAG 1 cut(s) 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.