Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003025

Physical Location & Seq

Genomic Coordinates Reverse (-)

51269302 .. 51269787

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0365100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTTTAGAGTGGGGTGCCTAGCCATGAGATTTGGGTGCCTAGGTGTTTACGACGGAGGGTCTCCATGGTTGTGGAACTTTGACCATTCTACGCATACCCTCTTCTTGTTGGAGTTAAAAGAAGGAGCTGGTAAATTGCGTGTGAAGAAGAAAAGGGCTTATCCACTAAACAATGGTACGTTTCCCGGCAATGATAACTGTCGATTATCATCGAGGGTTAAGCTACTAGATTTTGACCCAAATAGGAAGGACAGCTTGTATCTAAGTATTGGTACAGACATTTTCAGCTACAACATGGCTTCAAGAAGGTGGCTGAAGACTGAAGAAAAGAGTACACGGCAGGATGATCATGAACATGATTACTTATTCCCAGTAGTTGTTAGCCCTTGGTGGCCGACGCCAATTCCTACACTACCGCACCTTCTGTTTTCTCCTGCTGTAGGAAAAAAGAAAATTTTTAGCCTTCATGGCGGTCTGAGATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

161

Amino Acids

18.49

Weight (kDa)

9.48

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02630
fragaria_vesca	FvH4_1g16210 FvH4_1g16210 FvH4_1g16210 FvH4_2g34110
malus_domestica	MD02G1174000.v1.1 MD08G1097900.v1.1 MD15G1080000.v1.1
prunus_persica	Prupe.1G433000_v2.0.a1 Prupe.1G433000_v2.0.a1 Prupe.1G433000_v2.0.a1 Prupe.7G131700_v2.0.a1 Prupe.7G131700_v2.0.a1 Prupe.7G131700_v2.0.a1
pyrus_communis	pycom02g14030 pycom08g07980 pycom15g07450 pycom15g24820
rosa_chinensis	RchiOBHm_Chr2g0105911 RchiOBHm_Chr6g0308231
rosa_laevigata	RLG00000010656 RLG00000017469
rosa_multiflora	Rmu_sc0004367.1_g000010
rosa_roxburghii	Rroxscaffold_2G00137580 Rroxscaffold_7G00160330
rosa_rugosa	Rorug02G0131900 Rorug06G0365000 Rorug06G0365000 Rorug06G0365100 Rorug06G0365200
rosa_samantha	Rh2AG182400 Rh2CG187000 Rh6AG474100 Rh6BG484800 Rh6CG489900 Rh6DG476200
rosa_wichuraiana	Rw2G014310 Rw6G041360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	15, 36
AciI	CCGC	2 cut(s)	416, 471
AcoI	YGGCCR	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	453
AcuI	CTGAAG	2 cut(s)	335, 342
AcyI	GRCGYC	1 cut(s)	398
AfaI	GTAC	3 cut(s)	178, 274, 334
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	303
AhdI	GACNNNNNGTC	1 cut(s)	58
AluBI	AGCT	4 cut(s)	128, 223, 255, 288
AluI	AGCT	4 cut(s)	128, 223, 255, 288
Alw26I	GTCTC	1 cut(s)	66
AoxI	GGCC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	453
AspA2I	CCTAGG	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	186
AvrII	CCTAGG	1 cut(s)	40
BanI	GGYRCC	2 cut(s)	15, 36
BbsI	GAAGAC	1 cut(s)	323
BceAI	ACGGC	1 cut(s)	353
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	4 cut(s)	20, 41, 227, 484
BfmI	CTRYAG	1 cut(s)	438
BglI	GCCNNNNNGGC	1 cut(s)	468
BlnI	CCTAGG	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	186
BmeRI	GACNNNNNGTC	1 cut(s)	58
BmiI	GGNNCC	2 cut(s)	17, 38
BmrFI	CCNGG	1 cut(s)	186
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	470
BmuI	ACTGGG	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	3 cut(s)	40, 65, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	208
BseDI	CCNNGG	3 cut(s)	40, 65, 386
BseGI	GGATG	1 cut(s)	349
BseJI	GATNNNNATC	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	1 cut(s)	371
BshFI	GGCC	1 cut(s)	394
BshNI	GGYRCC	2 cut(s)	15, 36
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	394
Bso31I	GGTCTC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	346
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	2 cut(s)	416, 471
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	17, 38
BspT107I	GGYRCC	2 cut(s)	15, 36
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	40, 65, 386
BssMI	GATC	1 cut(s)	346
BssNI	GRCGYC	1 cut(s)	398
BssT1I	CCWWGG	3 cut(s)	40, 65, 386
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	398
BstDEI	CTNAG	2 cut(s)	263, 476
BstDSI	CCRYGG	1 cut(s)	65
BstENI	CCTNNNNNAGG	1 cut(s)	438
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	1 cut(s)	349
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	438
BstV2I	GAAGAC	1 cut(s)	323
BstXI	CCANNNNNNTGG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	394
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	349
CciI	TCATGA	1 cut(s)	349
CseI	GACGC	1 cut(s)	406
Csp6I	GTAC	3 cut(s)	177, 273, 333
CviAII	CATG	6 cut(s)	25, 66, 295, 350, 356, 467
CviQI	GTAC	3 cut(s)	177, 273, 333
DdeI	CTNAG	2 cut(s)	263, 476
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
DriI	GACNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	107
Eam1105I	GACNNNNNGTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	3 cut(s)	40, 65, 386
Eco31I	GGTCTC	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	335, 342
EcoNI	CCTNNNNNAGG	1 cut(s)	438
EcoT14I	CCWWGG	3 cut(s)	40, 65, 386
ErhI	CCWWGG	3 cut(s)	40, 65, 386
FaeI	CATG	6 cut(s)	28, 69, 298, 353, 359, 470
FaiI	YATR	7 cut(s)	26, 67, 96, 296, 351, 357, 468
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FatI	CATG	6 cut(s)	24, 65, 294, 349, 355, 466
FbaI	TGATCA	1 cut(s)	346
FokI	GGATG	1 cut(s)	356
FspBI	CTAG	4 cut(s)	20, 41, 227, 484
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	406
Hin1I	GRCGYC	1 cut(s)	398
Hin1II	CATG	6 cut(s)	28, 69, 298, 353, 359, 470
HpaII	CCGG	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	49, 335
Hpy188I	TCNGA	1 cut(s)	477
Hpy188III	TCNNGA	2 cut(s)	303, 350
Hpy8I	GTNNAC	2 cut(s)	49, 335
Hpy99I	CGWCG	2 cut(s)	56, 400
HpyAV	CCTTC	5 cut(s)	116, 241, 300, 431, 473
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	468
HpyF3I	CTNAG	2 cut(s)	263, 476
HpySE526I	ACGT	1 cut(s)	179
Hsp92I	GRCGYC	1 cut(s)	398
Hsp92II	CATG	6 cut(s)	28, 69, 298, 353, 359, 470
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	346
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	5 cut(s)	114, 199, 326, 384, 447
LweI	GCATC	1 cut(s)	470
MaeI	CTAG	4 cut(s)	20, 41, 227, 484
MaeII	ACGT	1 cut(s)	179
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	5 cut(s)	94, 157, 160, 328, 335
MluCI	AATT	3 cut(s)	134, 402, 453
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	50, 110, 207
MseI	TTAA	2 cut(s)	116, 219
MslI	CAYNNNNRTG	2 cut(s)	70, 354
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	468
NciI	CCSGG	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	6 cut(s)	28, 69, 298, 353, 359, 470
NlaIV	GGNNCC	2 cut(s)	17, 38
PagI	TCATGA	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	17, 38
RsaI	GTAC	3 cut(s)	178, 274, 334
RsaNI	GTAC	3 cut(s)	177, 273, 333
RseI	CAYNNNNRTG	2 cut(s)	70, 354
SaqAI	TTAA	2 cut(s)	116, 219
Sau3AI	GATC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	8 cut(s)	46, 130, 182, 225, 257, 290, 311, 423
SfaNI	GCATC	1 cut(s)	470
SfcI	CTRYAG	1 cut(s)	438
SmiMI	CAYNNNNRTG	2 cut(s)	70, 354
Sse9I	AATT	3 cut(s)	134, 402, 453
SsiI	CCGC	2 cut(s)	416, 471
SspMI	CTAG	4 cut(s)	20, 41, 227, 484
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	3 cut(s)	40, 65, 386
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	2 cut(s)	202, 212
TasI	AATT	3 cut(s)	134, 402, 453
TatI	WGTACW	1 cut(s)	332
Tru1I	TTAA	2 cut(s)	116, 219
Tru9I	TTAA	2 cut(s)	116, 219
TspDTI	ATGAA	2 cut(s)	366, 455
TspGWI	ACGGA	1 cut(s)	69
XagI	CCTNNNNNAGG	1 cut(s)	438
XapI	RAATTY	1 cut(s)	453
XmaJI	CCTAGG	1 cut(s)	40
XspI	CTAG	4 cut(s)	20, 41, 227, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.